Wall clock time and date at job start Tue Mar 31 2020 18:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 C 1.46494 * 120.00068 * 90.00086 * 4 3 2 6 6 C 1.52999 * 109.47318 * 89.99451 * 5 4 3 7 7 H 1.09008 * 109.70558 * 60.00360 * 6 5 4 8 8 C 1.53471 * 109.71017 * 180.58017 * 6 5 4 9 9 O 1.43178 * 108.24080 * 179.42357 * 8 6 5 10 10 C 1.36110 * 116.70218 * 313.76989 * 9 8 6 11 11 C 1.38703 * 119.39734 * 197.25535 * 10 9 8 12 12 C 1.38196 * 120.06734 * 180.15258 * 11 10 9 13 13 C 1.38253 * 120.11405 * 0.02562 * 12 11 10 14 14 C 1.38199 * 120.11122 * 359.93793 * 13 12 11 15 15 C 1.38705 * 120.06531 * 359.95754 * 14 13 12 16 16 O 1.36130 * 119.37961 * 180.28542 * 15 14 13 17 17 C 1.34779 * 119.99616 * 269.99507 * 4 3 2 18 18 O 1.21590 * 119.99679 * 180.02562 * 17 4 3 19 19 N 1.34772 * 120.00165 * 0.02562 * 17 4 3 20 20 C 1.46499 * 120.00119 * 180.02562 * 19 17 4 21 21 C 1.50703 * 109.47429 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99328 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00047 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99804 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99976 * 359.97438 * 23 21 20 26 26 H 1.48497 * 109.47112 * 90.00197 * 25 23 21 27 27 H 1.48507 * 109.46845 * 209.99891 * 25 23 21 28 28 H 1.48494 * 109.47025 * 329.99888 * 25 23 21 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 32 32 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 33 33 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 36 36 H 1.09002 * 109.47065 * 209.99666 * 5 4 3 37 37 H 1.09000 * 109.47308 * 329.99499 * 5 4 3 38 38 H 1.08997 * 109.71160 * 299.11324 * 8 6 5 39 39 H 1.09004 * 109.70756 * 59.69521 * 8 6 5 40 40 H 1.08005 * 119.96473 * 0.13913 * 11 10 9 41 41 H 1.07999 * 119.94286 * 179.97438 * 12 11 10 42 42 H 1.07990 * 119.94465 * 179.91796 * 13 12 11 43 43 H 1.07999 * 119.96613 * 179.97438 * 14 13 12 44 44 H 0.97001 * 120.00244 * 359.97438 * 19 17 4 45 45 H 1.09008 * 109.46898 * 299.99930 * 20 19 17 46 46 H 1.08994 * 109.47165 * 59.99976 * 20 19 17 47 47 H 0.96999 * 119.99948 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2370 1.4427 -1.2696 6 6 4.4918 2.8852 -1.7112 7 1 5.0812 3.4027 -0.9542 8 6 5.2459 2.8918 -3.0479 9 8 5.4553 4.2535 -3.4376 10 6 4.3855 5.0892 -3.3396 11 6 4.4010 6.2977 -4.0200 12 6 3.3236 7.1582 -3.9278 13 6 2.2276 6.8172 -3.1570 14 6 2.2054 5.6142 -2.4772 15 6 3.2826 4.7452 -2.5672 16 8 3.2435 3.5613 -1.8964 17 6 4.1793 1.4424 1.1664 18 8 5.3952 1.4428 1.1659 19 7 3.5059 1.4418 2.3338 20 6 4.2389 1.4423 3.6022 21 6 3.2600 1.4409 4.7481 22 1 2.1982 1.4401 4.5511 23 6 3.7202 1.4405 6.0478 24 7 2.8659 1.4397 7.0477 25 14 5.5569 1.4410 6.3884 26 1 6.0431 2.8412 6.4793 27 1 5.8227 0.7405 7.6706 28 1 6.2648 0.7417 5.2862 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9563 0.8899 36 1 5.1895 0.9288 -1.1397 37 1 3.6476 0.9289 -2.0291 38 1 6.2069 2.3911 -2.9303 39 1 4.6544 2.3785 -3.8061 40 1 5.2562 6.5667 -4.6224 41 1 3.3380 8.0989 -4.4581 42 1 1.3877 7.4923 -3.0858 43 1 1.3483 5.3505 -1.8754 44 1 2.5359 1.4419 2.3342 45 1 4.8662 0.5527 3.6597 46 1 4.8649 2.3327 3.6598 47 1 3.1896 1.4391 7.9621 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894485095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:49 Heat of formation + Delta-G solvation = -97.355815 kcal Electronic energy + Delta-G solvation = -29353.723031 eV Core-core repulsion = 25308.473543 eV Total energy + Delta-G solvation = -4045.249488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.33939 -41.22224 -38.78075 -38.30981 -37.26633 -36.31598 -34.59698 -34.13801 -32.54600 -31.60597 -30.21442 -29.57350 -27.58355 -26.64568 -24.87316 -23.87266 -23.54982 -22.69412 -21.71804 -21.06160 -20.05724 -19.28571 -18.57061 -18.31747 -17.86260 -17.52890 -16.76186 -16.48144 -16.15778 -16.13053 -15.76007 -15.64856 -15.48353 -15.17124 -15.02793 -14.94907 -14.84120 -14.58685 -14.34988 -14.01886 -13.90504 -13.24376 -13.13143 -12.97398 -12.85503 -12.81621 -12.71027 -12.53317 -12.25779 -12.13576 -12.01542 -11.93351 -11.70855 -11.63301 -11.52371 -11.15698 -10.92982 -10.14865 -9.63574 -9.53459 -9.06579 -8.40946 -6.47829 0.31391 0.33603 1.31995 1.33644 1.47079 1.63047 2.00435 2.09541 2.25554 2.27479 2.75631 2.94495 3.01823 3.26022 3.61931 3.70577 3.73823 3.96355 4.09294 4.12213 4.16748 4.22521 4.34799 4.39556 4.44597 4.47969 4.54347 4.60993 4.65689 4.72859 4.74116 4.90765 4.96292 5.02837 5.15981 5.20667 5.22299 5.23399 5.24080 5.41533 5.51537 5.52440 5.55412 5.72859 5.84545 5.95136 6.17186 6.40805 6.53029 7.03978 7.17276 7.58275 8.73859 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.003027 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.111519 B = 9246.407365 C = 9797.683317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.114 3.886 4 N -0.619 5.619 5 C 0.148 3.852 6 C 0.038 3.962 7 H 0.051 0.949 8 C 0.033 3.967 9 O -0.322 6.322 10 C 0.024 3.976 11 C -0.126 4.126 12 C -0.115 4.115 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.029 3.971 16 O -0.306 6.306 17 C 0.695 3.305 18 O -0.639 6.639 19 N -0.722 5.722 20 C 0.252 3.748 21 C -0.545 4.545 22 H 0.057 0.943 23 C 0.029 3.971 24 N -0.930 5.930 25 Si 0.937 3.063 26 H -0.266 1.266 27 H -0.271 1.271 28 H -0.260 1.260 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.143 0.857 39 H 0.100 0.900 40 H 0.145 0.855 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.139 0.861 44 H 0.402 0.598 45 H 0.012 0.988 46 H 0.006 0.994 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.897 5.279 -27.122 27.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.009 4.009 4 N -0.354 5.354 5 C 0.024 3.976 6 C -0.020 4.020 7 H 0.069 0.931 8 C -0.043 4.043 9 O -0.237 6.237 10 C -0.021 4.021 11 C -0.144 4.144 12 C -0.133 4.133 13 C -0.133 4.133 14 C -0.147 4.147 15 C -0.016 4.016 16 O -0.221 6.221 17 C 0.396 3.604 18 O -0.522 6.522 19 N -0.376 5.376 20 C 0.128 3.872 21 C -0.583 4.583 22 H 0.075 0.925 23 C -0.172 4.172 24 N -0.568 5.568 25 Si 0.761 3.239 26 H -0.191 1.191 27 H -0.196 1.196 28 H -0.184 1.184 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.118 0.882 40 H 0.163 0.837 41 H 0.179 0.821 42 H 0.177 0.823 43 H 0.157 0.843 44 H 0.239 0.761 45 H 0.030 0.970 46 H 0.024 0.976 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.027 5.207 -26.868 27.443 hybrid contribution 0.411 -0.157 1.069 1.156 sum -1.617 5.049 -25.799 26.338 Atomic orbital electron populations 1.21673 0.93722 1.02530 1.02444 1.21923 0.97311 0.96095 1.02327 1.21754 0.77652 0.97643 1.03835 1.47017 1.07186 1.77623 1.03574 1.21415 0.99779 0.91746 0.84625 1.23656 0.84818 0.95990 0.97543 0.93064 1.23759 1.04647 0.81145 0.94741 1.86269 1.33390 1.20875 1.83161 1.19287 0.88619 0.94252 0.99921 1.20780 1.01104 0.92219 1.00329 1.21314 0.92262 1.00247 0.99466 1.21314 0.99807 0.95569 0.96572 1.20766 0.97990 0.93526 1.02394 1.19313 0.96963 0.89009 0.96284 1.86294 1.31757 1.31831 1.72256 1.16210 0.85003 0.77744 0.81421 1.90818 1.13382 1.60841 1.87136 1.45293 1.10290 1.77572 1.04429 1.18945 0.92187 0.95379 0.80705 1.21233 0.93884 1.52757 0.90437 0.92497 1.25559 1.02464 0.93517 0.95632 1.69975 1.36460 1.50614 0.99796 0.85865 0.80220 0.79414 0.78439 1.19148 1.19580 1.18448 0.91858 0.91040 0.93078 0.93740 0.90351 0.87804 0.91845 0.87655 0.85884 0.83954 0.88165 0.83703 0.82066 0.82333 0.84270 0.76143 0.97013 0.97636 0.91791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.91 71.98 0.71 -1.82 16 2 C -0.14 -2.87 6.26 30.60 0.19 -2.68 16 3 C 0.11 2.67 4.93 86.38 0.43 3.10 16 4 N -0.62 -17.94 2.40 -839.83 -2.02 -19.96 16 5 C 0.15 3.31 5.15 86.38 0.44 3.75 16 6 C 0.04 0.93 3.29 30.75 0.10 1.03 16 7 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 8 C 0.03 0.61 6.56 72.14 0.47 1.08 16 9 O -0.32 -7.82 10.42 -82.60 -0.86 -8.68 16 10 C 0.02 0.58 6.49 22.56 0.15 0.73 16 11 C -0.13 -2.44 9.96 22.37 0.22 -2.21 16 12 C -0.12 -1.74 10.04 22.26 0.22 -1.51 16 13 C -0.11 -1.82 10.04 22.26 0.22 -1.59 16 14 C -0.13 -2.67 9.96 22.37 0.22 -2.45 16 15 C 0.03 0.73 6.49 22.56 0.15 0.88 16 16 O -0.31 -7.82 8.74 -82.83 -0.72 -8.55 16 17 C 0.69 27.89 8.28 179.06 1.48 29.37 16 18 O -0.64 -30.03 15.92 -4.00 -0.06 -30.10 16 19 N -0.72 -31.07 5.41 -482.29 -2.61 -33.68 16 20 C 0.25 12.90 4.50 85.63 0.38 13.29 16 21 C -0.55 -30.85 9.83 25.60 0.25 -30.60 16 22 H 0.06 3.39 7.84 -2.91 -0.02 3.36 16 23 C 0.03 1.65 5.47 84.65 0.46 2.11 16 24 N -0.93 -56.04 13.96 21.45 0.30 -55.74 16 25 Si 0.94 44.86 27.47 68.60 1.88 46.74 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.26 -12.39 6.54 99.48 0.65 -11.73 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.10 2.08 7.08 -2.39 -0.02 2.07 16 35 H 0.06 1.67 6.36 -2.39 -0.02 1.65 16 36 H 0.11 2.45 7.42 -2.39 -0.02 2.43 16 37 H 0.12 1.83 8.07 -2.39 -0.02 1.81 16 38 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.16 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.16 1.54 8.06 -2.92 -0.02 1.52 16 43 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.40 15.72 6.05 -92.71 -0.56 15.16 16 45 H 0.01 0.64 7.20 -2.38 -0.02 0.62 16 46 H 0.01 0.31 7.57 -2.39 -0.02 0.29 16 47 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -74.80 385.52 2.38 -72.42 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.36 Total: 25.06 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 6.12 Total: 12.48 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.33 Total: -109.39 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -1.65 Total: -47.32 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.74 kcal Total: -74.80 2.38 -72.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894485095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.934 kcal (2) G-P(sol) polarization free energy of solvation -74.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds