Wall clock time and date at job start Tue Mar 31 2020 18:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46792 * 2 1 4 4 N 1.46897 * 109.47330 * 119.99875 * 2 1 3 5 5 C 1.46903 * 110.99888 * 97.22966 * 4 2 1 6 6 C 1.53002 * 109.45931 * 57.60461 * 5 4 2 7 7 O 1.42895 * 109.47062 * 54.36416 * 6 5 4 8 8 C 1.53038 * 109.45180 * 177.57294 * 5 4 2 9 9 C 1.53190 * 109.31045 * 58.64928 * 8 5 4 10 10 N 1.46930 * 108.77911 * 54.63811 * 9 8 5 11 11 S 1.65593 * 120.63108 * 126.41441 * 10 9 8 12 12 O 1.42093 * 104.28020 * 26.04948 * 11 10 9 13 13 O 1.42104 * 104.27584 * 153.90641 * 11 10 9 14 14 C 1.81401 * 104.44870 * 269.97746 * 11 10 9 15 15 C 1.52998 * 109.47196 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47202 * 179.97438 * 15 14 11 17 17 H 1.08010 * 119.99658 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00303 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47252 * 90.00049 * 20 18 16 22 22 H 1.48511 * 109.46886 * 210.00003 * 20 18 16 23 23 H 1.48502 * 109.47440 * 329.99705 * 20 18 16 24 24 C 1.46924 * 118.73247 * 306.38934 * 10 9 8 25 25 C 1.53049 * 109.46102 * 297.63496 * 5 4 2 26 26 H 1.09010 * 109.46910 * 171.75958 * 1 2 3 27 27 H 1.08998 * 109.47354 * 291.75561 * 1 2 3 28 28 H 1.09001 * 109.47509 * 51.76045 * 1 2 3 29 29 H 1.08997 * 109.47436 * 240.00135 * 2 1 3 30 30 H 1.09002 * 109.46658 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47321 * 300.00370 * 3 2 1 32 32 H 1.08999 * 109.46788 * 60.00622 * 3 2 1 33 33 H 1.00899 * 111.00633 * 221.18262 * 4 2 1 34 34 H 1.09000 * 109.47323 * 294.35840 * 6 5 4 35 35 H 1.09005 * 109.47088 * 174.36155 * 6 5 4 36 36 H 0.96704 * 114.00086 * 175.13229 * 7 6 5 37 37 H 1.08999 * 109.49662 * 178.59988 * 8 5 4 38 38 H 1.08997 * 109.49785 * 298.69666 * 8 5 4 39 39 H 1.09000 * 109.58684 * 294.84808 * 9 8 5 40 40 H 1.09003 * 109.58662 * 174.42458 * 9 8 5 41 41 H 1.09003 * 109.46851 * 300.00151 * 14 11 10 42 42 H 1.09001 * 109.47343 * 60.00066 * 14 11 10 43 43 H 1.09003 * 109.46925 * 299.99593 * 15 14 11 44 44 H 1.08999 * 109.47388 * 60.00090 * 15 14 11 45 45 H 0.96998 * 120.00373 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58835 * 293.81970 * 24 10 9 47 47 H 1.09000 * 109.58280 * 173.39575 * 24 10 9 48 48 H 1.08997 * 109.49535 * 61.30695 * 25 5 4 49 49 H 1.09001 * 109.49606 * 181.40448 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.3579 -2.0901 0.8992 6 6 3.4068 -2.1329 -0.2139 7 8 4.5290 -1.3302 0.1581 8 6 2.9198 -2.7597 2.1553 9 6 1.8800 -2.6843 3.2778 10 7 0.6203 -3.2670 2.7956 11 16 -0.1304 -4.4742 3.6448 12 8 0.3000 -4.2799 4.9849 13 8 -1.5012 -4.3516 3.2906 14 6 0.5675 -6.0055 2.9676 15 6 -0.0551 -7.2082 3.6795 16 6 0.5243 -8.4804 3.1165 17 1 1.2625 -8.4356 2.3293 18 6 0.1121 -9.7016 3.6062 19 7 -0.7871 -9.7562 4.5643 20 14 0.8308 -11.2784 2.9088 21 1 2.0406 -11.6558 3.6829 22 1 -0.1764 -12.3656 3.0032 23 1 1.1995 -11.0675 1.4858 24 6 0.0393 -2.7578 1.5458 25 6 1.0997 -2.8325 0.4427 26 1 -0.3633 -1.0172 -0.1473 27 1 -0.3634 0.3809 0.9544 28 1 -0.3634 0.6361 -0.8071 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 2.8086 -0.2076 1.6002 34 1 2.9736 -1.7467 -1.1365 35 1 3.7314 -3.1620 -0.3679 36 1 5.2655 -1.3697 -0.4674 37 1 3.1478 -3.8036 1.9401 38 1 3.8288 -2.2449 2.4663 39 1 1.7178 -1.6430 3.5564 40 1 2.2345 -3.2451 4.1426 41 1 0.3508 -6.0629 1.9009 42 1 1.6468 -6.0114 3.1200 43 1 0.1613 -7.1510 4.7463 44 1 -1.1343 -7.2022 3.5267 45 1 -1.0769 -10.6153 4.9092 46 1 -0.2729 -1.7226 1.6832 47 1 -0.8206 -3.3672 1.2678 48 1 0.7133 -2.3694 -0.4652 49 1 1.3449 -3.8757 0.2437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917527389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:36 Heat of formation + Delta-G solvation = -125.475571 kcal Electronic energy + Delta-G solvation = -29135.269344 eV Core-core repulsion = 25224.244443 eV Total energy + Delta-G solvation = -3911.024901 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23307 -36.80712 -36.57079 -36.03249 -35.33315 -33.85933 -32.91709 -31.26894 -31.12106 -29.00979 -27.36497 -26.80149 -25.56400 -23.56954 -22.59367 -21.52048 -20.87727 -19.39538 -18.34242 -17.68723 -17.45027 -16.50437 -16.07078 -15.94120 -15.58179 -15.40371 -15.18028 -14.59437 -14.54802 -14.29731 -13.95104 -13.75269 -13.37594 -13.19820 -12.89963 -12.78529 -12.52549 -12.49291 -12.27233 -12.15129 -11.81108 -11.71951 -11.58965 -11.49442 -11.36193 -11.31426 -11.13901 -11.07096 -10.94344 -10.93229 -10.55317 -10.47182 -10.36424 -10.34314 -10.16908 -9.72470 -9.28524 -8.77392 -8.49022 -8.35197 -6.10913 -4.16369 0.86066 3.14712 3.26168 3.32305 3.34872 3.66090 4.10935 4.34399 4.43634 4.46227 4.58231 4.68053 4.73935 4.83914 4.89095 5.04581 5.06493 5.16211 5.20488 5.24136 5.28185 5.41183 5.42376 5.47063 5.58210 5.65525 5.67371 5.68493 5.75273 5.78263 5.79902 5.83452 5.90690 5.96154 6.10017 6.21184 6.27692 6.40726 6.54004 6.85361 6.95154 7.19273 7.33146 7.33320 7.39639 7.81974 8.19890 8.86986 9.48123 11.00167 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.003210 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.204376 B = 8721.105518 C = 9447.907486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.075 3.925 3 C -0.156 4.156 4 N -0.663 5.663 5 C 0.125 3.875 6 C 0.044 3.956 7 O -0.569 6.569 8 C -0.122 4.122 9 C 0.133 3.867 10 N -1.001 6.001 11 S 2.591 3.409 12 O -0.966 6.966 13 O -0.966 6.966 14 C -0.592 4.592 15 C 0.028 3.972 16 C -0.519 4.519 17 H 0.060 0.940 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.130 3.870 25 C -0.128 4.128 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.349 0.651 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.378 0.622 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.032 0.968 44 H 0.032 0.968 45 H 0.265 0.735 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.076 0.924 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.031 20.684 -12.442 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.034 4.034 3 C -0.214 4.214 4 N -0.295 5.295 5 C 0.034 3.966 6 C -0.036 4.036 7 O -0.374 6.374 8 C -0.161 4.161 9 C 0.007 3.993 10 N -0.837 5.837 11 S 2.690 3.310 12 O -0.956 6.956 13 O -0.956 6.956 14 C -0.725 4.725 15 C -0.011 4.011 16 C -0.559 4.559 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.005 3.995 25 C -0.168 4.168 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.168 0.832 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.225 0.775 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.236 20.747 -10.882 24.519 hybrid contribution 2.088 -1.316 -1.965 3.155 sum 9.323 19.431 -12.846 25.090 Atomic orbital electron populations 1.22136 0.94823 1.02103 1.01810 1.21544 0.95773 0.93755 0.92349 1.22037 1.00877 0.96261 1.02211 1.60724 1.39581 1.01274 1.27959 1.20893 0.92215 0.89954 0.93569 1.23011 0.87895 0.94500 0.98181 1.86398 1.27923 1.70275 1.52846 1.21955 0.98587 1.00811 0.94768 1.21227 0.82418 1.00133 0.95511 1.57854 1.35973 1.52950 1.36963 1.05653 0.74723 0.76049 0.74611 1.93527 1.82947 1.85026 1.34090 1.93526 1.31948 1.85899 1.84273 1.30521 1.11973 1.18081 1.11877 1.18950 0.96476 0.89961 0.95694 1.21008 1.24253 0.89931 1.20673 0.92133 1.25068 0.95004 0.99434 0.94997 1.69953 1.30284 1.25814 1.26799 0.86484 0.78852 0.82651 0.79368 1.20482 1.21005 1.19809 1.21343 0.94439 1.01460 0.82287 1.22077 0.95288 1.00419 0.98982 0.91847 0.91792 0.93165 0.93143 0.92657 0.92421 0.92008 0.83169 0.93401 0.93146 0.77496 0.91050 0.90293 0.90410 0.89659 0.86506 0.86464 0.94931 0.94933 0.92541 0.89649 0.89737 0.90559 0.90894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.86 37.15 0.29 -0.92 16 2 C 0.08 0.58 2.47 -67.72 -0.17 0.41 16 3 C -0.16 -1.06 9.06 37.16 0.34 -0.73 16 4 N -0.66 -5.74 4.51 -93.00 -0.42 -6.16 16 5 C 0.13 1.13 0.36 -131.55 -0.05 1.08 16 6 C 0.04 0.33 5.48 37.16 0.20 0.53 16 7 O -0.57 -4.09 12.55 -35.23 -0.44 -4.53 16 8 C -0.12 -1.23 4.91 -26.61 -0.13 -1.36 16 9 C 0.13 1.63 6.06 -3.71 -0.02 1.61 16 10 N -1.00 -14.09 3.22 -113.52 -0.37 -14.45 16 11 S 2.59 48.22 5.41 -107.50 -0.58 47.64 16 12 O -0.97 -20.61 16.72 -57.54 -0.96 -21.58 16 13 O -0.97 -20.53 16.72 -57.54 -0.96 -21.49 16 14 C -0.59 -11.51 6.12 37.16 0.23 -11.28 16 15 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 16 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.13 1.58 5.36 -3.71 -0.02 1.56 16 25 C -0.13 -1.24 4.28 -26.61 -0.11 -1.35 16 26 H 0.06 0.53 4.61 -51.92 -0.24 0.29 16 27 H 0.06 0.58 7.98 -51.93 -0.41 0.16 16 28 H 0.05 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.05 0.39 5.13 -51.93 -0.27 0.12 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.35 3.09 7.62 -39.29 -0.30 2.79 16 34 H 0.05 0.34 6.13 -51.93 -0.32 0.02 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.38 1.34 9.12 45.56 0.42 1.76 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.76 7.81 -51.93 -0.41 0.35 16 39 H 0.08 0.93 7.73 -51.93 -0.40 0.52 16 40 H 0.09 1.10 7.10 -51.93 -0.37 0.74 16 41 H 0.12 2.04 8.14 -51.92 -0.42 1.62 16 42 H 0.12 2.06 8.14 -51.92 -0.42 1.63 16 43 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.09 1.01 5.62 -51.93 -0.29 0.71 16 47 H 0.08 1.07 7.10 -51.93 -0.37 0.71 16 48 H 0.08 0.63 5.60 -51.93 -0.29 0.34 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 381.94 15.07 5.76 5.76 Total: -1.00 -34.74 381.94 -9.69 -44.44 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.44 Total: 3.15 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 0.01 Total: -23.08 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.05 Total: -46.55 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -2.37 Total: -47.60 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 48.22 SS G_CDS: -0.58 Total: 47.64 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.74 -9.69 -44.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917527389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.039 kcal (2) G-P(sol) polarization free energy of solvation -34.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds