Wall clock time and date at job start Tue Mar 31 2020 18:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.46792 * 2 1 4 4 N 1.46897 * 109.47330 * 119.99875 * 2 1 3 5 5 C 1.46903 * 110.99888 * 97.22966 * 4 2 1 6 6 C 1.53002 * 109.45931 * 57.60461 * 5 4 2 7 7 O 1.42895 * 109.47062 * 54.36416 * 6 5 4 8 8 C 1.53038 * 109.45180 * 177.57294 * 5 4 2 9 9 C 1.53190 * 109.31045 * 58.64928 * 8 5 4 10 10 N 1.46930 * 108.77911 * 54.63811 * 9 8 5 11 11 S 1.65593 * 120.63108 * 126.41441 * 10 9 8 12 12 O 1.42093 * 104.28020 * 26.04948 * 11 10 9 13 13 O 1.42104 * 104.27584 * 153.90641 * 11 10 9 14 14 C 1.81401 * 104.44870 * 269.97746 * 11 10 9 15 15 C 1.52998 * 109.47196 * 180.02562 * 14 11 10 16 16 C 1.50703 * 109.47202 * 179.97438 * 15 14 11 17 17 H 1.08010 * 119.99658 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00303 * 179.97438 * 16 15 14 19 19 N 1.31511 * 119.99822 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 119.99975 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47252 * 90.00049 * 20 18 16 22 22 H 1.48511 * 109.46886 * 210.00003 * 20 18 16 23 23 H 1.48502 * 109.47440 * 329.99705 * 20 18 16 24 24 C 1.46924 * 118.73247 * 306.38934 * 10 9 8 25 25 C 1.53049 * 109.46102 * 297.63496 * 5 4 2 26 26 H 1.09010 * 109.46910 * 171.75958 * 1 2 3 27 27 H 1.08998 * 109.47354 * 291.75561 * 1 2 3 28 28 H 1.09001 * 109.47509 * 51.76045 * 1 2 3 29 29 H 1.08997 * 109.47436 * 240.00135 * 2 1 3 30 30 H 1.09002 * 109.46658 * 179.97438 * 3 2 1 31 31 H 1.08994 * 109.47321 * 300.00370 * 3 2 1 32 32 H 1.08999 * 109.46788 * 60.00622 * 3 2 1 33 33 H 1.00899 * 111.00633 * 221.18262 * 4 2 1 34 34 H 1.09000 * 109.47323 * 294.35840 * 6 5 4 35 35 H 1.09005 * 109.47088 * 174.36155 * 6 5 4 36 36 H 0.96704 * 114.00086 * 175.13229 * 7 6 5 37 37 H 1.08999 * 109.49662 * 178.59988 * 8 5 4 38 38 H 1.08997 * 109.49785 * 298.69666 * 8 5 4 39 39 H 1.09000 * 109.58684 * 294.84808 * 9 8 5 40 40 H 1.09003 * 109.58662 * 174.42458 * 9 8 5 41 41 H 1.09003 * 109.46851 * 300.00151 * 14 11 10 42 42 H 1.09001 * 109.47343 * 60.00066 * 14 11 10 43 43 H 1.09003 * 109.46925 * 299.99593 * 15 14 11 44 44 H 1.08999 * 109.47388 * 60.00090 * 15 14 11 45 45 H 0.96998 * 120.00373 * 180.02562 * 19 18 16 46 46 H 1.09001 * 109.58835 * 293.81970 * 24 10 9 47 47 H 1.09000 * 109.58280 * 173.39575 * 24 10 9 48 48 H 1.08997 * 109.49535 * 61.30695 * 25 5 4 49 49 H 1.09001 * 109.49606 * 181.40448 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.3579 -2.0901 0.8992 6 6 3.4068 -2.1329 -0.2139 7 8 4.5290 -1.3302 0.1581 8 6 2.9198 -2.7597 2.1553 9 6 1.8800 -2.6843 3.2778 10 7 0.6203 -3.2670 2.7956 11 16 -0.1304 -4.4742 3.6448 12 8 0.3000 -4.2799 4.9849 13 8 -1.5012 -4.3516 3.2906 14 6 0.5675 -6.0055 2.9676 15 6 -0.0551 -7.2082 3.6795 16 6 0.5243 -8.4804 3.1165 17 1 1.2625 -8.4356 2.3293 18 6 0.1121 -9.7016 3.6062 19 7 -0.7871 -9.7562 4.5643 20 14 0.8308 -11.2784 2.9088 21 1 2.0406 -11.6558 3.6829 22 1 -0.1764 -12.3656 3.0032 23 1 1.1995 -11.0675 1.4858 24 6 0.0393 -2.7578 1.5458 25 6 1.0997 -2.8325 0.4427 26 1 -0.3633 -1.0172 -0.1473 27 1 -0.3634 0.3809 0.9544 28 1 -0.3634 0.6361 -0.8071 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4425 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 2.8086 -0.2076 1.6002 34 1 2.9736 -1.7467 -1.1365 35 1 3.7314 -3.1620 -0.3679 36 1 5.2655 -1.3697 -0.4674 37 1 3.1478 -3.8036 1.9401 38 1 3.8288 -2.2449 2.4663 39 1 1.7178 -1.6430 3.5564 40 1 2.2345 -3.2451 4.1426 41 1 0.3508 -6.0629 1.9009 42 1 1.6468 -6.0114 3.1200 43 1 0.1613 -7.1510 4.7463 44 1 -1.1343 -7.2022 3.5267 45 1 -1.0769 -10.6153 4.9092 46 1 -0.2729 -1.7226 1.6832 47 1 -0.8206 -3.3672 1.2678 48 1 0.7133 -2.3694 -0.4652 49 1 1.3449 -3.8757 0.2437 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917527389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:35 Heat of formation + Delta-G solvation = -153.592238 kcal Electronic energy + Delta-G solvation = -29136.488574 eV Core-core repulsion = 25224.244443 eV Total energy + Delta-G solvation = -3912.244131 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97111 -38.19685 -37.57897 -36.97085 -36.66224 -35.88978 -33.70977 -33.11498 -32.15342 -29.75169 -27.97254 -27.62316 -27.45836 -24.45834 -23.84095 -23.07387 -21.58666 -20.39160 -19.55703 -19.01487 -18.33765 -18.10909 -17.23089 -17.09052 -16.67557 -16.52162 -16.40954 -15.92121 -15.65114 -15.28476 -15.06233 -14.75509 -14.49993 -14.41576 -14.02344 -13.73206 -13.65136 -13.54992 -13.31121 -13.23227 -13.14704 -12.97706 -12.92974 -12.78474 -12.77608 -12.66173 -12.28918 -12.24661 -12.11447 -12.02645 -11.95709 -11.76555 -11.57252 -11.41433 -11.24531 -11.07003 -10.75071 -10.64886 -9.89985 -9.07573 -8.25738 -6.40138 -0.66663 1.40456 1.42637 1.53644 1.80008 2.38051 2.89706 3.07409 3.09162 3.20766 3.50475 3.69023 3.77872 4.01418 4.08782 4.12877 4.15960 4.26270 4.32180 4.35254 4.45343 4.55814 4.58230 4.62672 4.69538 4.75594 4.83076 4.86357 4.88986 4.91575 5.03772 5.08205 5.13786 5.18615 5.22102 5.26955 5.28102 5.36104 5.38941 5.43928 5.59187 5.68272 5.79523 6.06331 6.32318 6.65378 6.73494 6.89511 7.30035 8.86648 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.017548 B = 0.003210 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.204376 B = 8721.105518 C = 9447.907486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.077 3.923 3 C -0.150 4.150 4 N -0.669 5.669 5 C 0.125 3.875 6 C 0.050 3.950 7 O -0.580 6.580 8 C -0.116 4.116 9 C 0.128 3.872 10 N -0.989 5.989 11 S 2.610 3.390 12 O -0.997 6.997 13 O -0.996 6.996 14 C -0.586 4.586 15 C 0.022 3.978 16 C -0.538 4.538 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.256 1.256 24 C 0.123 3.877 25 C -0.126 4.126 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.348 0.652 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.395 0.605 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.140 0.860 42 H 0.139 0.861 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.267 0.733 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.094 0.906 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.065 21.247 -14.976 28.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.032 4.032 3 C -0.208 4.208 4 N -0.302 5.302 5 C 0.033 3.967 6 C -0.029 4.029 7 O -0.388 6.388 8 C -0.156 4.156 9 C 0.003 3.997 10 N -0.828 5.828 11 S 2.708 3.292 12 O -0.987 6.987 13 O -0.986 6.986 14 C -0.718 4.718 15 C -0.017 4.017 16 C -0.577 4.577 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.798 3.202 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.180 1.180 24 C -0.001 4.001 25 C -0.165 4.165 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.168 0.832 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.244 0.756 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.158 0.842 42 H 0.157 0.843 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.112 0.888 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 9.288 21.315 -13.432 26.852 hybrid contribution 1.452 -1.364 -1.169 2.310 sum 10.740 19.951 -14.601 26.955 Atomic orbital electron populations 1.22129 0.95205 1.02011 1.01483 1.21551 0.95364 0.94198 0.92107 1.21973 1.00842 0.95687 1.02277 1.60705 1.39652 1.01221 1.28624 1.20844 0.92382 0.89905 0.93552 1.22851 0.87707 0.94831 0.97525 1.86357 1.28449 1.70163 1.53821 1.21914 0.97995 1.01252 0.94417 1.21415 0.82031 0.99945 0.96327 1.57486 1.36568 1.51221 1.37486 1.04784 0.74062 0.76237 0.74077 1.93479 1.83292 1.85542 1.36393 1.93480 1.34103 1.86411 1.84624 1.30398 1.12862 1.16054 1.12496 1.18807 0.95326 0.92752 0.94845 1.21515 1.24418 0.90808 1.20936 0.90561 1.26139 0.95292 1.03649 0.95234 1.70107 1.31991 1.26896 1.28485 0.85302 0.78016 0.77524 0.79346 1.19595 1.20863 1.18007 1.21565 0.95226 1.01303 0.82030 1.22070 0.94811 1.01111 0.98490 0.92195 0.93115 0.92122 0.92571 0.92579 0.91624 0.92674 0.83196 0.92533 0.92876 0.75578 0.90932 0.89424 0.89875 0.90552 0.84207 0.84297 0.97804 0.97724 0.92393 0.89182 0.90471 0.88786 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 7.86 71.98 0.57 -1.57 16 2 C 0.08 1.00 2.47 44.91 0.11 1.11 16 3 C -0.15 -1.72 9.06 71.98 0.65 -1.07 16 4 N -0.67 -10.17 4.51 -448.15 -2.02 -12.19 16 5 C 0.12 1.93 0.36 3.56 0.00 1.93 16 6 C 0.05 0.60 5.48 71.98 0.39 1.00 16 7 O -0.58 -6.55 12.55 -148.98 -1.87 -8.42 16 8 C -0.12 -2.11 4.91 30.67 0.15 -1.96 16 9 C 0.13 3.00 6.06 86.36 0.52 3.53 16 10 N -0.99 -27.10 3.22 -513.07 -1.65 -28.75 16 11 S 2.61 98.60 5.41 -56.49 -0.31 98.30 16 12 O -1.00 -43.70 16.72 -127.65 -2.13 -45.83 16 13 O -1.00 -43.35 16.72 -127.65 -2.13 -45.49 16 14 C -0.59 -22.71 6.12 71.98 0.44 -22.27 16 15 C 0.02 1.15 4.98 29.85 0.15 1.30 16 16 C -0.54 -30.02 9.11 25.60 0.23 -29.78 16 17 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 18 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 19 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 20 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 23 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 24 C 0.12 2.84 5.36 86.36 0.46 3.31 16 25 C -0.13 -2.12 4.28 30.67 0.13 -1.99 16 26 H 0.06 0.88 4.61 -2.38 -0.01 0.87 16 27 H 0.05 0.85 7.98 -2.39 -0.02 0.84 16 28 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 29 H 0.06 0.69 5.13 -2.39 -0.01 0.68 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.35 5.42 7.62 -89.69 -0.68 4.74 16 34 H 0.06 0.59 6.13 -2.39 -0.01 0.58 16 35 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.39 1.56 9.12 -74.05 -0.68 0.89 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.47 7.81 -2.39 -0.02 1.45 16 39 H 0.08 1.89 7.73 -2.39 -0.02 1.87 16 40 H 0.08 1.94 7.10 -2.39 -0.02 1.93 16 41 H 0.14 4.71 8.14 -2.39 -0.02 4.69 16 42 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 45 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 46 H 0.09 2.02 5.62 -2.39 -0.01 2.01 16 47 H 0.08 1.91 7.10 -2.39 -0.02 1.89 16 48 H 0.09 1.28 5.60 -2.39 -0.01 1.27 16 49 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.01 381.94 -3.93 -79.94 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.40 Total: 20.58 kcal Atomic # 6 Polarization: -50.56 SS G_CDS: 4.28 Total: -46.28 kcal Atomic # 7 Polarization: -94.75 SS G_CDS: -3.39 Total: -98.14 kcal Atomic # 8 Polarization: -93.60 SS G_CDS: -6.14 Total: -99.74 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 98.60 SS G_CDS: -0.31 Total: 98.30 kcal Total: -76.01 -3.93 -79.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917527389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.655 kcal (2) G-P(sol) polarization free energy of solvation -76.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds