Wall clock time and date at job start Tue Mar 31 2020 18:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 H 1.09003 * 109.46832 * 54.68155 * 3 2 1 5 5 C 1.52992 * 109.47566 * 174.68558 * 3 2 1 6 6 N 1.46901 * 109.47188 * 179.11384 * 5 3 2 7 7 C 1.47013 * 110.99946 * 202.28922 * 6 5 3 8 8 C 1.53099 * 109.26015 * 177.60616 * 7 6 5 9 9 O 1.43019 * 109.25700 * 56.84995 * 8 7 6 10 10 C 1.43019 * 113.73532 * 301.33267 * 9 8 7 11 11 C 1.47012 * 110.99787 * 78.65705 * 6 5 3 12 12 N 1.46501 * 109.46827 * 294.68550 * 3 2 1 13 13 S 1.65607 * 119.99906 * 112.84824 * 12 3 2 14 14 O 1.42092 * 104.27791 * 310.03029 * 13 12 3 15 15 O 1.42104 * 104.27510 * 182.17322 * 13 12 3 16 16 C 1.81404 * 104.44841 * 66.10488 * 13 12 3 17 17 C 1.52998 * 109.47139 * 179.97438 * 16 13 12 18 18 C 1.52995 * 109.47178 * 179.97438 * 17 16 13 19 19 C 1.50698 * 109.47117 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00040 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99755 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00325 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46916 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46991 * 119.99639 * 23 21 19 26 26 H 1.48494 * 109.47107 * 240.00451 * 23 21 19 27 27 H 1.08996 * 109.47244 * 305.57742 * 1 2 3 28 28 H 1.08999 * 109.47296 * 65.58167 * 1 2 3 29 29 H 1.09005 * 109.46561 * 185.57878 * 1 2 3 30 30 H 1.09000 * 109.47244 * 239.99806 * 2 1 3 31 31 H 1.09004 * 109.47219 * 119.99788 * 2 1 3 32 32 H 1.09005 * 109.46884 * 299.11486 * 5 3 2 33 33 H 1.08996 * 109.47231 * 59.11257 * 5 3 2 34 34 H 1.08997 * 109.50832 * 297.54820 * 7 6 5 35 35 H 1.09005 * 109.50511 * 57.67218 * 7 6 5 36 36 H 1.09000 * 109.50399 * 296.91630 * 8 7 6 37 37 H 1.08999 * 109.54450 * 176.80545 * 8 7 6 38 38 H 1.08995 * 109.50741 * 298.73234 * 10 9 8 39 39 H 1.09000 * 109.54000 * 178.62311 * 10 9 8 40 40 H 1.08995 * 109.51061 * 302.32093 * 11 6 5 41 41 H 1.09003 * 109.50909 * 62.45896 * 11 6 5 42 42 H 0.96997 * 120.00169 * 292.85099 * 12 3 2 43 43 H 1.09007 * 109.46760 * 299.99576 * 16 13 12 44 44 H 1.09003 * 109.46972 * 59.99609 * 16 13 12 45 45 H 1.08995 * 109.47190 * 299.99876 * 17 16 13 46 46 H 1.08999 * 109.46895 * 59.99876 * 17 16 13 47 47 H 1.09004 * 109.47283 * 300.00180 * 18 17 16 48 48 H 1.08999 * 109.47153 * 60.00224 * 18 17 16 49 49 H 0.96996 * 120.00182 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 0.8386 5 6 3.5641 1.4447 0.1336 6 7 4.0556 2.8289 0.1123 7 6 5.4689 2.8800 -0.2893 8 6 5.9224 4.3407 -0.3561 9 8 5.6969 4.9631 0.9117 10 6 4.3306 4.9319 1.3334 11 6 3.8610 3.4771 1.4173 12 7 1.6589 2.0951 -1.2550 13 16 0.5594 3.3335 -1.2437 14 8 -0.5303 2.8277 -0.4850 15 8 0.4021 3.6749 -2.6141 16 6 1.3935 4.6712 -0.3462 17 6 0.4684 5.8873 -0.2682 18 6 1.1717 7.0153 0.4893 19 6 0.2602 8.2129 0.5667 20 1 -0.7222 8.1736 0.1200 21 6 0.6810 9.3592 1.2071 22 7 1.8775 9.4073 1.7508 23 14 -0.4485 10.8440 1.3025 24 1 -1.7297 10.5361 0.6176 25 1 -0.7142 11.1732 2.7259 26 1 0.2006 12.0032 0.6390 27 1 -0.3633 0.5979 0.8358 28 1 -0.3634 0.4248 -0.9357 29 1 -0.3632 -1.0229 0.0999 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8469 0.9731 1.0748 33 1 4.0023 0.8907 -0.6965 34 1 6.0745 2.3438 0.4414 35 1 5.5857 2.4174 -1.2693 36 1 5.3532 4.8637 -1.1247 37 1 6.9843 4.3821 -0.5981 38 1 3.7152 5.4721 0.6140 39 1 4.2408 5.4004 2.3135 40 1 2.8043 3.4506 1.6831 41 1 4.4410 2.9506 2.1754 42 1 2.0505 1.8019 -2.0926 43 1 1.6383 4.3352 0.6615 44 1 2.3092 4.9447 -0.8705 45 1 0.2240 6.2232 -1.2759 46 1 -0.4474 5.6140 0.2559 47 1 1.4158 6.6792 1.4971 48 1 2.0877 7.2887 -0.0343 49 1 2.1734 10.2136 2.2016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921436331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:20 Heat of formation + Delta-G solvation = -131.552572 kcal Electronic energy + Delta-G solvation = -29434.451718 eV Core-core repulsion = 25523.163298 eV Total energy + Delta-G solvation = -3911.288419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.77210 -37.67284 -36.69651 -35.65578 -35.02074 -34.63287 -32.19646 -31.72469 -31.20497 -29.33645 -27.74394 -26.13752 -24.13844 -23.62645 -22.83918 -21.20775 -20.69092 -20.43028 -19.19254 -17.46477 -16.75703 -16.58049 -16.33258 -15.96757 -15.66777 -15.32274 -15.18158 -15.07426 -14.83130 -14.46308 -14.29895 -14.10296 -13.73548 -13.52624 -13.11684 -12.54975 -12.39806 -12.28127 -12.08960 -11.98169 -11.84611 -11.77464 -11.63565 -11.59569 -11.38928 -11.28194 -11.14717 -10.99394 -10.94240 -10.91354 -10.76251 -10.53057 -10.33844 -9.90406 -9.77653 -9.55698 -9.20763 -9.00574 -8.57302 -8.38777 -6.03705 -4.06166 0.61884 2.95495 3.30523 3.38391 3.43139 3.49370 3.92345 4.06242 4.41967 4.44678 4.50766 4.74760 4.78191 4.84025 4.92497 4.97777 5.05585 5.08932 5.18915 5.23063 5.26714 5.32666 5.34613 5.42628 5.48429 5.50553 5.56905 5.67000 5.75918 5.81566 5.88123 5.88981 6.01615 6.15735 6.16837 6.32731 6.39006 6.52777 6.72328 6.72836 6.91243 7.07585 7.20551 7.59029 7.69757 7.94376 8.35922 8.99994 9.58543 11.07205 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.004388 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.371887 B = 6380.046207 C = 8208.419205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.161 3.839 4 H 0.086 0.914 5 C 0.043 3.957 6 N -0.534 5.534 7 C 0.022 3.978 8 C 0.060 3.940 9 O -0.383 6.383 10 C 0.056 3.944 11 C 0.012 3.988 12 N -1.103 6.103 13 S 2.599 3.401 14 O -0.963 6.963 15 O -0.970 6.970 16 C -0.604 4.604 17 C -0.106 4.106 18 C 0.034 3.966 19 C -0.525 4.525 20 H 0.057 0.943 21 C 0.059 3.941 22 N -0.893 5.893 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.413 0.587 43 H 0.123 0.877 44 H 0.132 0.868 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.019 0.981 48 H 0.020 0.980 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.494 -19.983 -2.728 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.053 3.947 4 H 0.104 0.896 5 C -0.087 4.087 6 N -0.259 5.259 7 C -0.106 4.106 8 C -0.017 4.017 9 O -0.302 6.302 10 C -0.020 4.020 11 C -0.116 4.116 12 N -0.859 5.859 13 S 2.695 3.305 14 O -0.953 6.953 15 O -0.960 6.960 16 C -0.736 4.736 17 C -0.146 4.146 18 C -0.004 4.004 19 C -0.564 4.564 20 H 0.075 0.925 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.246 0.754 43 H 0.141 0.859 44 H 0.150 0.850 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.037 0.963 48 H 0.038 0.962 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.535 -19.522 -3.098 20.819 hybrid contribution 0.571 0.383 0.585 0.902 sum 7.106 -19.138 -2.514 20.569 Atomic orbital electron populations 1.21763 0.94403 1.00993 1.03604 1.21860 0.97443 0.95449 1.02237 1.20775 0.93614 0.94175 0.86177 0.89593 1.22575 0.95420 0.89161 1.01548 1.62132 1.18209 1.16735 1.28805 1.22786 0.88207 0.98505 1.01108 1.22647 1.01135 0.91119 0.86790 1.88005 1.27023 1.78826 1.36307 1.22865 0.82725 0.94172 1.02289 1.22986 1.02054 0.96776 0.89752 1.55483 1.64416 1.51971 1.14026 1.05286 0.74754 0.75376 0.75105 1.93574 1.50403 1.77616 1.73695 1.93564 1.85591 1.84177 1.32703 1.30649 1.13218 1.15538 1.14155 1.21502 0.97025 0.93678 1.02359 1.19028 0.95616 0.90879 0.94855 1.21291 1.01439 0.97981 1.35646 0.92454 1.24990 0.95137 0.98704 0.95389 1.69954 1.18003 1.28296 1.36953 0.86549 0.81032 0.82796 0.77733 1.19658 1.21000 1.20996 0.91670 0.92236 0.93250 0.91518 0.91216 0.93196 0.90091 0.94111 0.89733 0.92048 0.88803 0.90506 0.87943 0.89545 0.93765 0.75411 0.85898 0.84957 0.91839 0.91835 0.96250 0.96177 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.65 37.16 0.32 -1.23 16 2 C -0.13 -1.03 5.61 -26.73 -0.15 -1.18 16 3 C 0.16 1.43 2.23 -67.93 -0.15 1.28 16 4 H 0.09 0.83 6.55 -51.93 -0.34 0.49 16 5 C 0.04 0.32 4.69 -3.83 -0.02 0.31 16 6 N -0.53 -5.09 4.45 -234.31 -1.04 -6.14 16 7 C 0.02 0.20 5.58 -3.71 -0.02 0.18 16 8 C 0.06 0.66 7.01 37.21 0.26 0.92 16 9 O -0.38 -5.46 10.83 -35.23 -0.38 -5.85 16 10 C 0.06 0.78 6.90 37.21 0.26 1.04 16 11 C 0.01 0.13 4.64 -3.71 -0.02 0.12 16 12 N -1.10 -11.44 4.66 -4.89 -0.02 -11.46 16 13 S 2.60 38.16 5.32 -107.50 -0.57 37.59 16 14 O -0.96 -16.18 15.49 -57.54 -0.89 -17.07 16 15 O -0.97 -17.45 18.08 -57.54 -1.04 -18.49 16 16 C -0.60 -9.26 5.08 37.16 0.19 -9.07 16 17 C -0.11 -2.12 5.16 -26.73 -0.14 -2.25 16 18 C 0.03 0.84 4.97 -27.89 -0.14 0.70 16 19 C -0.53 -14.57 9.11 -34.44 -0.31 -14.89 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 23 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 24 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H 0.06 0.75 7.88 -51.93 -0.41 0.34 16 28 H 0.06 0.71 7.14 -51.93 -0.37 0.34 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.35 7.94 -51.93 -0.41 -0.07 16 33 H 0.08 0.51 7.81 -51.93 -0.41 0.11 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.61 8.01 -51.93 -0.42 0.19 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.21 6.43 -51.93 -0.33 0.87 16 39 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.09 0.91 5.11 -51.93 -0.27 0.65 16 41 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.41 3.58 8.92 -34.47 -0.31 3.28 16 43 H 0.12 1.69 5.17 -51.92 -0.27 1.42 16 44 H 0.13 1.93 7.35 -51.92 -0.38 1.55 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 390.11 15.07 5.88 5.88 Total: -1.00 -34.02 390.11 -10.90 -44.91 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.52 Total: 1.96 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -0.02 Total: -22.52 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.33 Total: -42.89 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -2.31 Total: -41.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 38.16 SS G_CDS: -0.57 Total: 37.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.02 -10.90 -44.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921436331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.639 kcal (2) G-P(sol) polarization free energy of solvation -34.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds