Wall clock time and date at job start Tue Mar 31 2020 18:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47240 * 2 1 4 4 H 1.09003 * 109.46832 * 54.68155 * 3 2 1 5 5 C 1.52992 * 109.47566 * 174.68558 * 3 2 1 6 6 N 1.46901 * 109.47188 * 179.11384 * 5 3 2 7 7 C 1.47013 * 110.99946 * 202.28922 * 6 5 3 8 8 C 1.53099 * 109.26015 * 177.60616 * 7 6 5 9 9 O 1.43019 * 109.25700 * 56.84995 * 8 7 6 10 10 C 1.43019 * 113.73532 * 301.33267 * 9 8 7 11 11 C 1.47012 * 110.99787 * 78.65705 * 6 5 3 12 12 N 1.46501 * 109.46827 * 294.68550 * 3 2 1 13 13 S 1.65607 * 119.99906 * 112.84824 * 12 3 2 14 14 O 1.42092 * 104.27791 * 310.03029 * 13 12 3 15 15 O 1.42104 * 104.27510 * 182.17322 * 13 12 3 16 16 C 1.81404 * 104.44841 * 66.10488 * 13 12 3 17 17 C 1.52998 * 109.47139 * 179.97438 * 16 13 12 18 18 C 1.52995 * 109.47178 * 179.97438 * 17 16 13 19 19 C 1.50698 * 109.47117 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00040 * 359.97438 * 19 18 17 21 21 C 1.37882 * 119.99755 * 180.02562 * 19 18 17 22 22 N 1.31512 * 120.00325 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99894 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46916 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.46991 * 119.99639 * 23 21 19 26 26 H 1.48494 * 109.47107 * 240.00451 * 23 21 19 27 27 H 1.08996 * 109.47244 * 305.57742 * 1 2 3 28 28 H 1.08999 * 109.47296 * 65.58167 * 1 2 3 29 29 H 1.09005 * 109.46561 * 185.57878 * 1 2 3 30 30 H 1.09000 * 109.47244 * 239.99806 * 2 1 3 31 31 H 1.09004 * 109.47219 * 119.99788 * 2 1 3 32 32 H 1.09005 * 109.46884 * 299.11486 * 5 3 2 33 33 H 1.08996 * 109.47231 * 59.11257 * 5 3 2 34 34 H 1.08997 * 109.50832 * 297.54820 * 7 6 5 35 35 H 1.09005 * 109.50511 * 57.67218 * 7 6 5 36 36 H 1.09000 * 109.50399 * 296.91630 * 8 7 6 37 37 H 1.08999 * 109.54450 * 176.80545 * 8 7 6 38 38 H 1.08995 * 109.50741 * 298.73234 * 10 9 8 39 39 H 1.09000 * 109.54000 * 178.62311 * 10 9 8 40 40 H 1.08995 * 109.51061 * 302.32093 * 11 6 5 41 41 H 1.09003 * 109.50909 * 62.45896 * 11 6 5 42 42 H 0.96997 * 120.00169 * 292.85099 * 12 3 2 43 43 H 1.09007 * 109.46760 * 299.99576 * 16 13 12 44 44 H 1.09003 * 109.46972 * 59.99609 * 16 13 12 45 45 H 1.08995 * 109.47190 * 299.99876 * 17 16 13 46 46 H 1.08999 * 109.46895 * 59.99876 * 17 16 13 47 47 H 1.09004 * 109.47283 * 300.00180 * 18 17 16 48 48 H 1.08999 * 109.47153 * 60.00224 * 18 17 16 49 49 H 0.96996 * 120.00182 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6009 1.9831 0.8386 5 6 3.5641 1.4447 0.1336 6 7 4.0556 2.8289 0.1123 7 6 5.4689 2.8800 -0.2893 8 6 5.9224 4.3407 -0.3561 9 8 5.6969 4.9631 0.9117 10 6 4.3306 4.9319 1.3334 11 6 3.8610 3.4771 1.4173 12 7 1.6589 2.0951 -1.2550 13 16 0.5594 3.3335 -1.2437 14 8 -0.5303 2.8277 -0.4850 15 8 0.4021 3.6749 -2.6141 16 6 1.3935 4.6712 -0.3462 17 6 0.4684 5.8873 -0.2682 18 6 1.1717 7.0153 0.4893 19 6 0.2602 8.2129 0.5667 20 1 -0.7222 8.1736 0.1200 21 6 0.6810 9.3592 1.2071 22 7 1.8775 9.4073 1.7508 23 14 -0.4485 10.8440 1.3025 24 1 -1.7297 10.5361 0.6176 25 1 -0.7142 11.1732 2.7259 26 1 0.2006 12.0032 0.6390 27 1 -0.3633 0.5979 0.8358 28 1 -0.3634 0.4248 -0.9357 29 1 -0.3632 -1.0229 0.0999 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8469 0.9731 1.0748 33 1 4.0023 0.8907 -0.6965 34 1 6.0745 2.3438 0.4414 35 1 5.5857 2.4174 -1.2693 36 1 5.3532 4.8637 -1.1247 37 1 6.9843 4.3821 -0.5981 38 1 3.7152 5.4721 0.6140 39 1 4.2408 5.4004 2.3135 40 1 2.8043 3.4506 1.6831 41 1 4.4410 2.9506 2.1754 42 1 2.0505 1.8019 -2.0926 43 1 1.6383 4.3352 0.6615 44 1 2.3092 4.9447 -0.8705 45 1 0.2240 6.2232 -1.2759 46 1 -0.4474 5.6140 0.2559 47 1 1.4158 6.6792 1.4971 48 1 2.0877 7.2887 -0.0343 49 1 2.1734 10.2136 2.2016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921436331.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:19 Heat of formation + Delta-G solvation = -158.012224 kcal Electronic energy + Delta-G solvation = -29435.599094 eV Core-core repulsion = 25523.163298 eV Total energy + Delta-G solvation = -3912.435796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.62316 -38.57111 -37.94705 -36.96405 -36.46495 -35.84029 -34.15349 -32.54636 -32.11287 -30.12929 -29.58070 -26.98375 -25.59540 -24.95054 -23.56969 -22.39258 -21.93880 -21.30230 -20.35280 -18.71781 -18.44755 -17.64439 -17.28475 -17.20945 -16.89039 -16.48834 -16.38295 -16.01420 -15.86756 -15.84730 -15.47151 -15.15776 -14.61128 -14.43119 -14.32267 -14.01061 -13.92512 -13.50393 -13.27037 -13.18611 -13.07926 -12.95243 -12.83454 -12.74476 -12.65351 -12.56169 -12.48923 -12.29636 -12.11776 -12.07900 -11.72228 -11.71790 -11.62473 -11.47739 -11.27501 -11.05700 -10.66764 -10.55122 -10.16649 -9.29628 -8.19927 -6.30218 -0.60695 1.39134 1.40444 1.52980 1.89620 2.40886 2.75128 2.84439 2.98820 3.13564 3.31026 3.74464 3.82645 3.91173 3.94571 4.03642 4.13298 4.20497 4.25090 4.26464 4.38855 4.42429 4.42945 4.56229 4.62985 4.70421 4.73802 4.79067 4.86290 4.87719 4.93114 5.02360 5.03639 5.09452 5.10972 5.12595 5.20758 5.45814 5.49133 5.59806 5.68082 5.82615 5.96280 6.05523 6.23115 6.23608 6.31933 6.85079 7.38736 8.90957 Molecular weight = 334.18amu Principal moments of inertia in cm(-1) A = 0.010849 B = 0.004388 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.371887 B = 6380.046207 C = 8208.419205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C 0.153 3.847 4 H 0.077 0.923 5 C 0.048 3.952 6 N -0.545 5.545 7 C 0.029 3.971 8 C 0.051 3.949 9 O -0.407 6.407 10 C 0.055 3.945 11 C 0.021 3.979 12 N -1.086 6.086 13 S 2.625 3.375 14 O -0.983 6.983 15 O -1.002 7.002 16 C -0.601 4.601 17 C -0.105 4.105 18 C 0.041 3.959 19 C -0.551 4.551 20 H 0.056 0.944 21 C 0.007 3.993 22 N -0.925 5.925 23 Si 0.957 3.043 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.278 1.278 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.049 0.951 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.113 0.887 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.055 0.945 42 H 0.425 0.575 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.058 0.942 46 H 0.064 0.936 47 H 0.005 0.995 48 H -0.001 1.001 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 -22.217 -3.039 23.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.163 4.163 3 C 0.045 3.955 4 H 0.095 0.905 5 C -0.081 4.081 6 N -0.271 5.271 7 C -0.099 4.099 8 C -0.026 4.026 9 O -0.326 6.326 10 C -0.022 4.022 11 C -0.107 4.107 12 N -0.846 5.846 13 S 2.719 3.281 14 O -0.972 6.972 15 O -0.992 6.992 16 C -0.731 4.731 17 C -0.144 4.144 18 C 0.003 3.997 19 C -0.589 4.589 20 H 0.075 0.925 21 C -0.191 4.191 22 N -0.565 5.565 23 Si 0.782 3.218 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.204 1.204 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.067 0.933 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.131 0.869 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.073 0.927 42 H 0.261 0.739 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.024 0.976 48 H 0.017 0.983 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.112 -21.757 -3.420 23.144 hybrid contribution 0.447 1.039 0.679 1.319 sum 7.560 -20.719 -2.741 22.225 Atomic orbital electron populations 1.21795 0.96494 1.01332 1.01660 1.21838 0.95426 0.94734 1.04274 1.21039 0.94912 0.94691 0.84811 0.90458 1.22598 0.93955 0.88095 1.03490 1.62095 1.18992 1.18182 1.27790 1.22762 0.87659 0.96830 1.02642 1.22898 1.02270 0.92460 0.84978 1.87960 1.26883 1.79792 1.37959 1.22742 0.82613 0.96182 1.00645 1.22818 1.02030 0.94841 0.91052 1.55067 1.63844 1.50181 1.15538 1.04288 0.74754 0.75310 0.73715 1.93554 1.51836 1.77847 1.74008 1.93516 1.86335 1.84981 1.34405 1.30592 1.12519 1.14347 1.15662 1.21303 0.97587 0.94217 1.01268 1.18862 0.94673 0.91756 0.94411 1.21758 1.01957 0.99469 1.35742 0.92525 1.25844 0.96615 1.01700 0.94957 1.70069 1.19598 1.29227 1.37580 0.85515 0.79187 0.79054 0.78023 1.18963 1.20217 1.20408 0.93502 0.94309 0.91831 0.89685 0.88894 0.91443 0.87689 0.93296 0.87246 0.93388 0.86912 0.93175 0.89518 0.89473 0.92697 0.73880 0.84494 0.84388 0.92293 0.91746 0.97627 0.98280 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.65 71.98 0.62 -2.30 16 2 C -0.12 -1.51 5.61 30.59 0.17 -1.34 16 3 C 0.15 2.29 2.23 44.99 0.10 2.39 16 4 H 0.08 1.33 6.55 -2.39 -0.02 1.31 16 5 C 0.05 0.53 4.69 86.30 0.40 0.94 16 6 N -0.55 -9.10 4.45 -895.22 -3.99 -13.09 16 7 C 0.03 0.43 5.58 86.31 0.48 0.91 16 8 C 0.05 1.05 7.01 72.02 0.50 1.56 16 9 O -0.41 -11.79 10.83 -148.98 -1.61 -13.40 16 10 C 0.06 1.59 6.90 72.02 0.50 2.09 16 11 C 0.02 0.43 4.64 86.32 0.40 0.83 16 12 N -1.09 -20.27 4.66 -169.39 -0.79 -21.06 16 13 S 2.62 75.81 5.32 -56.49 -0.30 75.51 16 14 O -0.98 -32.77 15.49 -127.65 -1.98 -34.74 16 15 O -1.00 -35.74 18.08 -127.65 -2.31 -38.04 16 16 C -0.60 -18.70 5.08 71.98 0.37 -18.33 16 17 C -0.10 -4.30 5.16 30.59 0.16 -4.14 16 18 C 0.04 2.10 4.97 29.85 0.15 2.25 16 19 C -0.55 -31.40 9.11 25.60 0.23 -31.17 16 20 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 21 C 0.01 0.42 5.46 84.66 0.46 0.88 16 22 N -0.92 -55.24 13.29 21.45 0.28 -54.95 16 23 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 27 H 0.05 1.04 7.88 -2.39 -0.02 1.02 16 28 H 0.04 0.88 7.14 -2.39 -0.02 0.86 16 29 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.61 7.94 -2.38 -0.02 0.59 16 33 H 0.10 0.75 7.81 -2.39 -0.02 0.74 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 1.12 8.01 -2.38 -0.02 1.10 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 1.68 6.43 -2.39 -0.02 1.67 16 39 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 40 H 0.09 1.77 5.11 -2.39 -0.01 1.76 16 41 H 0.05 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.42 6.18 8.92 -96.75 -0.86 5.32 16 43 H 0.14 3.82 5.17 -2.39 -0.01 3.81 16 44 H 0.14 4.13 7.35 -2.39 -0.02 4.11 16 45 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.06 2.59 8.14 -2.39 -0.02 2.58 16 47 H 0.01 0.28 8.14 -2.38 -0.02 0.27 16 48 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -75.20 390.11 -4.05 -79.25 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.07 Total: 19.43 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 4.55 Total: -45.43 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -4.49 Total: -89.10 kcal Atomic # 8 Polarization: -80.29 SS G_CDS: -5.90 Total: -86.19 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 75.81 SS G_CDS: -0.30 Total: 75.51 kcal Total: -75.20 -4.05 -79.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921436331.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.763 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds