Wall clock time and date at job start Tue Mar 31 2020 18:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 H 1.08995 * 109.47658 * 305.00197 * 3 2 1 5 5 C 1.53000 * 109.46983 * 184.99497 * 3 2 1 6 6 N 1.46509 * 109.46741 * 65.00553 * 5 3 2 7 7 C 1.34773 * 120.00026 * 179.97438 * 6 5 3 8 8 O 1.21595 * 119.99761 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00302 * 180.02562 * 7 6 5 10 10 C 1.39945 * 120.00535 * 175.37804 * 9 7 6 11 11 C 1.38861 * 120.07142 * 214.80848 * 10 9 7 12 12 C 1.38116 * 119.92754 * 179.76549 * 11 10 9 13 13 C 1.38280 * 120.07270 * 0.51416 * 12 11 10 14 14 C 1.50698 * 119.93085 * 179.72217 * 13 12 11 15 15 C 1.50698 * 109.46973 * 270.01474 * 14 13 12 16 16 H 1.08006 * 120.00238 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99975 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47068 * 90.00730 * 19 17 15 21 21 H 1.48506 * 109.46944 * 210.00309 * 19 17 15 22 22 H 1.48497 * 109.47372 * 330.00326 * 19 17 15 23 23 C 1.38286 * 120.13699 * 359.73668 * 13 12 11 24 24 C 1.38108 * 120.07038 * 0.02562 * 23 13 12 25 25 C 1.50703 * 109.46679 * 65.00355 * 3 2 1 26 26 O 1.20822 * 120.00153 * 120.00043 * 25 3 2 27 27 O 1.34229 * 120.00163 * 299.71848 * 25 3 2 28 28 C 1.45194 * 117.00365 * 180.27850 * 27 25 3 29 29 H 1.08999 * 109.47260 * 300.00276 * 1 2 3 30 30 H 1.09009 * 109.46756 * 59.99671 * 1 2 3 31 31 H 1.09001 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46775 * 240.00284 * 2 1 3 33 33 H 1.08994 * 109.47014 * 120.00697 * 2 1 3 34 34 H 1.09000 * 109.47051 * 184.99979 * 5 3 2 35 35 H 1.08994 * 109.48065 * 305.00611 * 5 3 2 36 36 H 0.96998 * 120.00067 * 359.97438 * 6 5 3 37 37 H 0.97008 * 119.99872 * 355.36868 * 9 7 6 38 38 H 1.08005 * 120.03448 * 0.02562 * 11 10 9 39 39 H 1.07999 * 119.96326 * 180.25272 * 12 11 10 40 40 H 1.08998 * 109.47280 * 30.02130 * 14 13 12 41 41 H 1.09000 * 109.46726 * 150.01935 * 14 13 12 42 42 H 0.97006 * 119.99945 * 179.97438 * 18 17 15 43 43 H 1.07998 * 119.96269 * 180.02562 * 23 13 12 44 44 H 1.08000 * 120.03863 * 179.97438 * 24 23 13 45 45 H 1.09000 * 109.47437 * 180.02562 * 28 27 25 46 46 H 1.08996 * 109.47263 * 300.00002 * 28 27 25 47 47 H 1.09005 * 109.46836 * 60.00004 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1256 6 7 3.9480 0.8978 -1.4298 7 6 5.2500 0.8022 -1.7643 8 8 6.1068 1.1700 -0.9837 9 7 5.6025 0.3000 -2.9642 10 6 6.9474 0.2899 -3.3509 11 6 7.2901 0.4850 -4.6824 12 6 8.6186 0.4793 -5.0600 13 6 9.6065 0.2690 -4.1156 14 6 11.0547 0.2572 -4.5322 15 6 11.4596 -1.1465 -4.9017 16 1 10.7401 -1.9497 -4.8414 17 6 12.7484 -1.4053 -5.3179 18 7 13.6244 -0.4271 -5.3918 19 14 13.2501 -3.1451 -5.7766 20 1 13.0033 -3.3661 -7.2242 21 1 14.6937 -3.3370 -5.4857 22 1 12.4524 -4.1155 -4.9846 23 6 9.2683 0.0693 -2.7897 24 6 7.9419 0.0788 -2.4049 25 6 1.6413 2.1161 1.2878 26 8 2.4897 2.5529 2.0289 27 8 0.3435 2.2360 1.6088 28 6 0.0329 2.9014 2.8613 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9355 2.4654 -0.0365 35 1 3.9955 0.8311 0.6659 36 1 3.2645 0.6047 -2.0526 37 1 4.9240 -0.0547 -3.5598 38 1 6.5187 0.6451 -5.4212 39 1 8.8859 0.6350 -6.0948 40 1 11.1908 0.9130 -5.3921 41 1 11.6732 0.6082 -3.7061 42 1 14.5312 -0.6093 -5.6842 43 1 10.0421 -0.0942 -2.0543 44 1 7.6783 -0.0777 -1.3693 45 1 -1.0480 2.9305 2.9991 46 1 0.4893 2.3544 3.6863 47 1 0.4242 3.9185 2.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932564211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:56 Heat of formation + Delta-G solvation = -99.400011 kcal Electronic energy + Delta-G solvation = -27459.627360 eV Core-core repulsion = 23414.289229 eV Total energy + Delta-G solvation = -4045.338131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24414 -40.44199 -38.44734 -37.27545 -36.51047 -34.80782 -33.94077 -32.92229 -30.60247 -30.22351 -29.61198 -28.27156 -26.55142 -24.60820 -23.34366 -23.05079 -22.29093 -21.18813 -20.78552 -20.12811 -18.68992 -18.12669 -17.40463 -17.25309 -16.71314 -16.26393 -15.79447 -15.30837 -14.91354 -14.76181 -14.74397 -14.45125 -14.18405 -13.92103 -13.86520 -13.67172 -13.41988 -12.97649 -12.80173 -12.74438 -12.56985 -12.37898 -11.95758 -11.86238 -11.53446 -11.48860 -11.33955 -11.23715 -11.14595 -10.86420 -10.80502 -10.60311 -10.36573 -10.12563 -9.83822 -9.42417 -9.35335 -9.20159 -8.38553 -8.22086 -7.32100 -5.99808 -4.03727 1.69000 1.92631 2.04438 2.14317 2.67164 3.17300 3.32805 3.39057 3.43482 3.89394 4.07002 4.10847 4.27053 4.42387 4.53286 4.62117 4.63323 4.71511 4.82170 4.90027 5.05058 5.13811 5.34096 5.38373 5.45168 5.45813 5.50250 5.58672 5.65369 5.78822 5.92329 5.99003 6.07534 6.10831 6.20986 6.26313 6.57030 6.72829 6.99409 7.06710 7.22324 7.22945 7.28099 7.56828 7.78016 7.86299 7.92691 7.96080 8.37033 8.50131 9.01654 9.59767 11.09726 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030769 B = 0.001717 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.794926 B =16299.087750 C =16543.781201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.117 4.117 3 C -0.094 4.094 4 H 0.117 0.883 5 C 0.154 3.846 6 N -0.747 5.747 7 C 0.703 3.297 8 O -0.567 6.567 9 N -0.680 5.680 10 C 0.119 3.881 11 C -0.144 4.144 12 C -0.109 4.109 13 C -0.044 4.044 14 C 0.047 3.953 15 C -0.510 4.510 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.109 4.109 24 C -0.116 4.116 25 C 0.470 3.530 26 O -0.497 6.497 27 O -0.352 6.352 28 C 0.031 3.969 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.395 0.605 37 H 0.401 0.599 38 H 0.113 0.887 39 H 0.121 0.879 40 H 0.028 0.972 41 H 0.029 0.971 42 H 0.261 0.739 43 H 0.121 0.879 44 H 0.130 0.870 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.604 3.517 10.377 34.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.155 4.155 3 C -0.113 4.113 4 H 0.135 0.865 5 C 0.029 3.971 6 N -0.404 5.404 7 C 0.403 3.597 8 O -0.442 6.442 9 N -0.327 5.327 10 C 0.027 3.973 11 C -0.165 4.165 12 C -0.128 4.128 13 C -0.044 4.044 14 C 0.011 3.989 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.127 4.127 24 C -0.136 4.136 25 C 0.312 3.688 26 O -0.383 6.383 27 O -0.268 6.268 28 C -0.063 4.063 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.229 0.771 37 H 0.235 0.765 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.120 0.880 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -31.422 4.074 11.363 33.661 hybrid contribution -0.381 -1.111 -0.731 1.384 sum -31.803 2.962 10.631 33.663 Atomic orbital electron populations 1.22014 0.94320 1.02255 1.03485 1.21569 0.97240 0.92800 1.03858 1.21346 0.97172 0.98431 0.94363 0.86486 1.20931 0.90526 1.00992 0.84630 1.44981 1.05977 1.70034 1.19427 1.15849 0.82648 0.78839 0.82371 1.90977 1.48575 1.54261 1.50413 1.42407 1.07858 1.64314 1.18144 1.17290 0.81597 1.04881 0.93578 1.20709 0.96827 1.05036 0.93922 1.20855 0.91275 1.00964 0.99673 1.20710 0.98577 0.92786 0.92355 1.18349 0.85686 0.97645 0.97254 1.21080 0.95967 0.93281 1.44535 0.92454 1.25015 0.96555 0.97148 0.95661 1.69963 1.04432 1.31453 1.47484 0.86543 0.77680 0.84747 0.78762 1.20646 1.21201 1.19833 1.21018 0.95104 1.00282 0.96342 1.21158 0.92175 1.00744 0.99527 1.23352 0.80894 0.76791 0.87797 1.90741 1.51349 1.44914 1.51307 1.86558 1.27495 1.71518 1.41261 1.23325 1.02147 0.97390 0.83412 0.90604 0.92341 0.92295 0.90033 0.90922 0.90184 0.90300 0.77054 0.76487 0.86910 0.86060 0.95340 0.95291 0.92891 0.86136 0.85241 0.87954 0.91731 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 9.55 37.16 0.35 -0.29 16 2 C -0.12 -0.53 5.32 -26.73 -0.14 -0.67 16 3 C -0.09 -0.54 2.36 -91.77 -0.22 -0.76 16 4 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 5 C 0.15 1.37 4.41 -4.04 -0.02 1.35 16 6 N -0.75 -6.32 5.24 -65.22 -0.34 -6.67 16 7 C 0.70 9.39 8.41 -86.93 -0.73 8.66 16 8 O -0.57 -10.30 13.78 5.28 0.07 -10.22 16 9 N -0.68 -8.45 5.34 -14.22 -0.08 -8.53 16 10 C 0.12 1.99 6.30 -83.69 -0.53 1.46 16 11 C -0.14 -2.37 9.97 -39.40 -0.39 -2.76 16 12 C -0.11 -2.13 9.69 -39.61 -0.38 -2.51 16 13 C -0.04 -0.98 5.07 -104.59 -0.53 -1.51 16 14 C 0.05 1.25 5.10 -29.04 -0.15 1.10 16 15 C -0.51 -14.45 9.09 -34.44 -0.31 -14.76 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.11 -2.29 9.69 -39.61 -0.38 -2.67 16 24 C -0.12 -2.22 8.70 -39.39 -0.34 -2.56 16 25 C 0.47 3.76 7.23 36.01 0.26 4.02 16 26 O -0.50 -5.72 15.67 -18.75 -0.29 -6.01 16 27 O -0.35 -2.25 7.72 -39.26 -0.30 -2.55 16 28 C 0.03 0.14 10.56 101.05 1.07 1.21 16 29 H 0.08 0.36 5.47 -51.93 -0.28 0.07 16 30 H 0.06 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.28 7.07 -51.93 -0.37 -0.09 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.88 7.96 -51.93 -0.41 0.46 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.40 1.88 7.67 -40.82 -0.31 1.57 16 37 H 0.40 3.33 8.84 -40.82 -0.36 2.97 16 38 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 41 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 44 H 0.13 2.50 6.22 -52.49 -0.33 2.18 16 45 H 0.10 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 47 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -35.83 393.54 -8.94 -44.76 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.10 Total: 1.70 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -2.54 Total: -9.14 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.32 Total: -41.15 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.52 Total: -18.79 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.83 -8.94 -44.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932564211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.636 kcal (2) G-P(sol) polarization free energy of solvation -35.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds