Wall clock time and date at job start Tue Mar 31 2020 18:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47134 * 2 1 4 4 H 1.08995 * 109.47658 * 305.00197 * 3 2 1 5 5 C 1.53000 * 109.46983 * 184.99497 * 3 2 1 6 6 N 1.46509 * 109.46741 * 65.00553 * 5 3 2 7 7 C 1.34773 * 120.00026 * 179.97438 * 6 5 3 8 8 O 1.21595 * 119.99761 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00302 * 180.02562 * 7 6 5 10 10 C 1.39945 * 120.00535 * 175.37804 * 9 7 6 11 11 C 1.38861 * 120.07142 * 214.80848 * 10 9 7 12 12 C 1.38116 * 119.92754 * 179.76549 * 11 10 9 13 13 C 1.38280 * 120.07270 * 0.51416 * 12 11 10 14 14 C 1.50698 * 119.93085 * 179.72217 * 13 12 11 15 15 C 1.50698 * 109.46973 * 270.01474 * 14 13 12 16 16 H 1.08006 * 120.00238 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99975 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00002 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47068 * 90.00730 * 19 17 15 21 21 H 1.48506 * 109.46944 * 210.00309 * 19 17 15 22 22 H 1.48497 * 109.47372 * 330.00326 * 19 17 15 23 23 C 1.38286 * 120.13699 * 359.73668 * 13 12 11 24 24 C 1.38108 * 120.07038 * 0.02562 * 23 13 12 25 25 C 1.50703 * 109.46679 * 65.00355 * 3 2 1 26 26 O 1.20822 * 120.00153 * 120.00043 * 25 3 2 27 27 O 1.34229 * 120.00163 * 299.71848 * 25 3 2 28 28 C 1.45194 * 117.00365 * 180.27850 * 27 25 3 29 29 H 1.08999 * 109.47260 * 300.00276 * 1 2 3 30 30 H 1.09009 * 109.46756 * 59.99671 * 1 2 3 31 31 H 1.09001 * 109.47168 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46775 * 240.00284 * 2 1 3 33 33 H 1.08994 * 109.47014 * 120.00697 * 2 1 3 34 34 H 1.09000 * 109.47051 * 184.99979 * 5 3 2 35 35 H 1.08994 * 109.48065 * 305.00611 * 5 3 2 36 36 H 0.96998 * 120.00067 * 359.97438 * 6 5 3 37 37 H 0.97008 * 119.99872 * 355.36868 * 9 7 6 38 38 H 1.08005 * 120.03448 * 0.02562 * 11 10 9 39 39 H 1.07999 * 119.96326 * 180.25272 * 12 11 10 40 40 H 1.08998 * 109.47280 * 30.02130 * 14 13 12 41 41 H 1.09000 * 109.46726 * 150.01935 * 14 13 12 42 42 H 0.97006 * 119.99945 * 179.97438 * 18 17 15 43 43 H 1.07998 * 119.96269 * 180.02562 * 23 13 12 44 44 H 1.08000 * 120.03863 * 179.97438 * 24 23 13 45 45 H 1.09000 * 109.47437 * 180.02562 * 28 27 25 46 46 H 1.08996 * 109.47263 * 300.00002 * 28 27 25 47 47 H 1.09005 * 109.46836 * 60.00004 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4443 -0.1256 6 7 3.9480 0.8978 -1.4298 7 6 5.2500 0.8022 -1.7643 8 8 6.1068 1.1700 -0.9837 9 7 5.6025 0.3000 -2.9642 10 6 6.9474 0.2899 -3.3509 11 6 7.2901 0.4850 -4.6824 12 6 8.6186 0.4793 -5.0600 13 6 9.6065 0.2690 -4.1156 14 6 11.0547 0.2572 -4.5322 15 6 11.4596 -1.1465 -4.9017 16 1 10.7401 -1.9497 -4.8414 17 6 12.7484 -1.4053 -5.3179 18 7 13.6244 -0.4271 -5.3918 19 14 13.2501 -3.1451 -5.7766 20 1 13.0033 -3.3661 -7.2242 21 1 14.6937 -3.3370 -5.4857 22 1 12.4524 -4.1155 -4.9846 23 6 9.2683 0.0693 -2.7897 24 6 7.9419 0.0788 -2.4049 25 6 1.6413 2.1161 1.2878 26 8 2.4897 2.5529 2.0289 27 8 0.3435 2.2360 1.6088 28 6 0.0329 2.9014 2.8613 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9355 2.4654 -0.0365 35 1 3.9955 0.8311 0.6659 36 1 3.2645 0.6047 -2.0526 37 1 4.9240 -0.0547 -3.5598 38 1 6.5187 0.6451 -5.4212 39 1 8.8859 0.6350 -6.0948 40 1 11.1908 0.9130 -5.3921 41 1 11.6732 0.6082 -3.7061 42 1 14.5312 -0.6093 -5.6842 43 1 10.0421 -0.0942 -2.0543 44 1 7.6783 -0.0777 -1.3693 45 1 -1.0480 2.9305 2.9991 46 1 0.4893 2.3544 3.6863 47 1 0.4242 3.9185 2.8391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932564211.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:55 Heat of formation + Delta-G solvation = -122.591405 kcal Electronic energy + Delta-G solvation = -27460.633015 eV Core-core repulsion = 23414.289229 eV Total energy + Delta-G solvation = -4046.343785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.93843 -41.51400 -39.80111 -37.95151 -37.24226 -36.20897 -35.05390 -34.54979 -32.17584 -31.72508 -30.35042 -28.85600 -28.17712 -25.63858 -24.68155 -23.77320 -23.72289 -22.42646 -21.66285 -21.27203 -19.68647 -18.80913 -18.52279 -18.40981 -17.96744 -17.28980 -16.89723 -16.73024 -16.16820 -15.96211 -15.84568 -15.44518 -15.12476 -14.84697 -14.59582 -14.51008 -14.40626 -14.23303 -14.19371 -14.10392 -13.63589 -13.29267 -13.20847 -13.11936 -12.86326 -12.59863 -12.46088 -12.26952 -12.05185 -12.00237 -11.90315 -11.70518 -11.65398 -11.53185 -11.41360 -11.25123 -10.87950 -10.58406 -10.24233 -9.72449 -8.81834 -8.16245 -6.31266 0.51479 0.61475 1.07797 1.27776 1.40912 1.42584 1.53997 1.87325 2.05295 2.41869 3.04433 3.12700 3.19667 3.32911 3.64179 3.80198 4.08557 4.09437 4.20502 4.30979 4.32948 4.42118 4.42491 4.51338 4.60329 4.62621 4.70127 4.72710 4.73969 4.83517 4.92033 5.13491 5.16385 5.23927 5.29597 5.32768 5.34593 5.35716 5.45433 5.52850 5.59346 5.65507 5.78010 5.95969 6.12091 6.15653 6.29328 6.63404 6.81524 6.99574 7.37144 7.47837 8.91537 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.030769 B = 0.001717 C = 0.001692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.794926 B =16299.087750 C =16543.781201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C -0.081 4.081 4 H 0.148 0.852 5 C 0.157 3.843 6 N -0.717 5.717 7 C 0.699 3.301 8 O -0.618 6.618 9 N -0.663 5.663 10 C 0.137 3.863 11 C -0.125 4.125 12 C -0.113 4.113 13 C -0.077 4.077 14 C 0.057 3.943 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.123 4.123 24 C -0.125 4.125 25 C 0.470 3.530 26 O -0.541 6.541 27 O -0.346 6.346 28 C 0.024 3.976 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.419 0.581 37 H 0.426 0.574 38 H 0.163 0.837 39 H 0.128 0.872 40 H 0.007 0.993 41 H -0.003 1.003 42 H 0.265 0.735 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.134 0.866 46 H 0.058 0.942 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.558 2.211 8.814 37.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.151 4.151 3 C -0.100 4.100 4 H 0.166 0.834 5 C 0.032 3.968 6 N -0.376 5.376 7 C 0.399 3.601 8 O -0.497 6.497 9 N -0.312 5.312 10 C 0.042 3.958 11 C -0.145 4.145 12 C -0.132 4.132 13 C -0.077 4.077 14 C 0.020 3.980 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.142 4.142 24 C -0.145 4.145 25 C 0.314 3.686 26 O -0.430 6.430 27 O -0.261 6.261 28 C -0.069 4.069 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.258 0.742 37 H 0.266 0.734 38 H 0.180 0.820 39 H 0.145 0.855 40 H 0.026 0.974 41 H 0.015 0.985 42 H 0.074 0.926 43 H 0.124 0.876 44 H 0.142 0.858 45 H 0.152 0.848 46 H 0.077 0.923 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -35.493 2.746 9.767 36.915 hybrid contribution 0.690 -0.629 -0.147 0.946 sum -34.803 2.117 9.620 36.170 Atomic orbital electron populations 1.21984 0.93473 1.02663 1.03641 1.21588 0.97860 0.91489 1.04180 1.21316 0.94710 0.99711 0.94292 0.83409 1.20804 0.92777 0.99186 0.83997 1.44637 1.04788 1.68559 1.19585 1.16054 0.83551 0.78485 0.81968 1.90966 1.50494 1.56303 1.51957 1.42138 1.06714 1.64013 1.18375 1.17330 0.82997 1.02216 0.93253 1.21018 0.96400 1.02516 0.94585 1.20971 0.92188 1.00672 0.99340 1.20405 0.96973 0.96687 0.93682 1.18092 0.88394 0.96439 0.95115 1.21403 0.96392 0.94150 1.44595 0.92542 1.25958 0.96467 1.01717 0.95393 1.70095 1.04876 1.33868 1.48298 0.85411 0.77323 0.79169 0.78931 1.19331 1.20686 1.19117 1.20914 0.96014 1.01507 0.95721 1.21139 0.91946 1.01426 0.99998 1.23803 0.80976 0.75881 0.87966 1.90734 1.52513 1.46960 1.52839 1.86569 1.26369 1.71276 1.41923 1.23561 1.04064 0.96794 0.82520 0.91583 0.91023 0.91791 0.88201 0.92167 0.92447 0.92385 0.74216 0.73437 0.81976 0.85454 0.97432 0.98468 0.92631 0.87579 0.85764 0.84818 0.92312 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.74 9.55 71.98 0.69 -0.06 16 2 C -0.11 -0.70 5.32 30.59 0.16 -0.53 16 3 C -0.08 -0.75 2.36 -11.54 -0.03 -0.78 16 4 H 0.15 0.52 8.14 -2.39 -0.02 0.50 16 5 C 0.16 2.63 4.41 86.38 0.38 3.01 16 6 N -0.72 -10.13 5.24 -478.52 -2.51 -12.64 16 7 C 0.70 17.20 8.41 179.06 1.51 18.71 16 8 O -0.62 -22.36 13.78 -4.02 -0.06 -22.42 16 9 N -0.66 -14.13 5.34 -317.18 -1.69 -15.83 16 10 C 0.14 4.23 6.30 38.15 0.24 4.47 16 11 C -0.13 -3.68 9.97 22.39 0.22 -3.46 16 12 C -0.11 -4.31 9.69 22.25 0.22 -4.10 16 13 C -0.08 -3.55 5.07 -19.84 -0.10 -3.65 16 14 C 0.06 3.14 5.10 29.10 0.15 3.29 16 15 C -0.53 -30.82 9.09 25.60 0.23 -30.59 16 16 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 17 C 0.00 0.15 5.46 84.65 0.46 0.61 16 18 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 19 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 23 C -0.12 -5.40 9.69 22.25 0.22 -5.18 16 24 C -0.12 -4.79 8.70 22.39 0.19 -4.60 16 25 C 0.47 7.11 7.23 71.24 0.51 7.63 16 26 O -0.54 -12.77 15.67 21.98 0.34 -12.42 16 27 O -0.35 -3.88 7.72 -51.41 -0.40 -4.27 16 28 C 0.02 0.19 10.56 113.37 1.20 1.39 16 29 H 0.07 0.46 5.47 -2.39 -0.01 0.44 16 30 H 0.07 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 32 H 0.10 0.27 7.07 -2.39 -0.02 0.25 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 1.26 7.96 -2.39 -0.02 1.24 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 2.04 7.67 -92.71 -0.71 1.33 16 37 H 0.43 4.84 8.84 -92.70 -0.82 4.02 16 38 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 41 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 42 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 43 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 44 H 0.12 4.91 6.22 -2.91 -0.02 4.90 16 45 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 47 H 0.06 0.55 8.13 -2.38 -0.02 0.53 16 Total: -1.00 -83.13 393.54 3.72 -79.41 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -0.53 Total: 12.04 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 6.25 Total: -13.84 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -3.92 Total: -85.44 kcal Atomic # 8 Polarization: -39.01 SS G_CDS: -0.11 Total: -39.12 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -83.13 3.72 -79.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932564211.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.178 kcal (2) G-P(sol) polarization free energy of solvation -83.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds