Wall clock time and date at job start Tue Mar 31 2020 17:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46660 * 2 1 4 4 C 1.50696 * 109.47076 * 120.00078 * 2 1 3 5 5 O 1.21280 * 119.99950 * 123.49317 * 4 2 1 6 6 N 1.34776 * 120.00029 * 303.48600 * 4 2 1 7 7 C 1.47675 * 134.45113 * 184.52478 * 6 4 2 8 8 C 1.53448 * 85.97302 * 155.73275 * 7 6 4 9 9 C 1.47670 * 134.45605 * 4.54960 * 6 4 2 10 10 C 1.52630 * 113.69979 * 268.84140 * 8 7 6 11 11 C 1.53178 * 109.36660 * 171.34676 * 10 8 7 12 12 C 1.53139 * 109.35881 * 59.05339 * 11 10 8 13 13 N 1.46894 * 109.07679 * 303.52253 * 12 11 10 14 14 C 1.36940 * 120.68983 * 235.34351 * 13 12 11 15 15 H 1.08000 * 119.99755 * 147.52410 * 14 13 12 16 16 C 1.38807 * 119.99879 * 327.52639 * 14 13 12 17 17 N 1.31624 * 119.99843 * 167.00791 * 16 14 13 18 18 Si 1.86797 * 120.00293 * 347.00359 * 16 14 13 19 19 H 1.48506 * 109.47225 * 87.11556 * 18 16 14 20 20 H 1.48501 * 109.47614 * 207.11576 * 18 16 14 21 21 H 1.48507 * 109.46941 * 327.11926 * 18 16 14 22 22 C 1.47115 * 118.62333 * 55.36216 * 13 12 11 23 23 C 1.52995 * 109.46601 * 240.00312 * 2 1 3 24 24 F 1.39901 * 109.47133 * 299.99548 * 23 2 1 25 25 F 1.39898 * 109.47887 * 59.99772 * 23 2 1 26 26 F 1.39902 * 109.46868 * 179.97438 * 23 2 1 27 27 H 1.09003 * 109.46919 * 299.99463 * 1 2 3 28 28 H 1.09001 * 109.47415 * 59.99965 * 1 2 3 29 29 H 1.09006 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46595 * 174.45433 * 3 2 1 31 31 H 1.09001 * 109.47139 * 294.45368 * 3 2 1 32 32 H 1.08998 * 109.47548 * 54.45827 * 3 2 1 33 33 H 1.08994 * 113.79631 * 41.46557 * 7 6 4 34 34 H 1.09009 * 113.79045 * 269.99485 * 7 6 4 35 35 H 1.09002 * 113.79161 * 90.00665 * 9 6 4 36 36 H 1.08999 * 113.79276 * 318.52868 * 9 6 4 37 37 H 1.08998 * 109.48905 * 51.37269 * 10 8 7 38 38 H 1.09001 * 109.48357 * 291.30890 * 10 8 7 39 39 H 1.08997 * 109.48964 * 299.08873 * 11 10 8 40 40 H 1.09001 * 109.49367 * 179.02270 * 11 10 8 41 41 H 1.09008 * 109.53975 * 63.39950 * 12 11 10 42 42 H 1.09007 * 109.54233 * 183.56275 * 12 11 10 43 43 H 0.97001 * 119.99692 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.63327 * 68.33099 * 22 13 12 45 45 H 1.08996 * 109.63641 * 188.92657 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7809 -1.6582 1.1203 6 7 1.6498 -0.2924 2.4533 7 6 1.9984 -0.6806 3.8348 8 6 1.5609 0.7367 4.2282 9 6 0.7139 0.7369 2.9485 10 6 2.6968 1.7560 4.2121 11 6 2.1203 3.1620 4.4049 12 6 1.3681 3.2239 5.7374 13 7 0.3322 2.1824 5.7527 14 6 -0.9781 2.5033 5.9879 15 1 -1.7662 1.9344 5.5171 16 6 -1.2933 3.5596 6.8314 17 7 -2.5209 4.0335 6.8622 18 14 0.0246 4.3087 7.9229 19 1 0.7456 5.3681 7.1725 20 1 -0.6086 4.9001 9.1289 21 1 0.9847 3.2533 8.3350 22 6 0.7318 0.7874 5.5105 23 6 2.0399 -0.7212 -1.2493 24 9 1.5736 -2.0402 -1.2493 25 9 1.5736 -0.0618 -2.3916 26 9 3.4389 -0.7207 -1.2496 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1254 1.4441 0.0993 31 1 1.7599 1.9269 -0.9355 32 1 1.5978 1.9842 0.8362 33 1 3.0614 -0.8698 3.9835 34 1 1.3634 -1.4663 4.2443 35 1 -0.3031 0.3729 3.0943 36 1 0.7567 1.6739 2.3931 37 1 3.2181 1.7046 3.2562 38 1 3.3948 1.5353 5.0197 39 1 1.4341 3.3887 3.5890 40 1 2.9315 3.8900 4.4112 41 1 2.0657 3.0562 6.5581 42 1 0.9032 4.2036 5.8485 43 1 -2.7412 4.7715 7.4519 44 1 1.3296 0.4271 6.3477 45 1 -0.1567 0.1663 5.3971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982125905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:43 Heat of formation + Delta-G solvation = -129.937562 kcal Electronic energy + Delta-G solvation = -31398.566615 eV Core-core repulsion = 26810.047536 eV Total energy + Delta-G solvation = -4588.519079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.21887 -47.71819 -47.60729 -41.04444 -38.86509 -36.22658 -35.58294 -32.78371 -31.01116 -30.48906 -27.85792 -26.70639 -26.54885 -26.03828 -25.48087 -22.80797 -22.22909 -21.17679 -19.58237 -18.53013 -18.43276 -18.21246 -17.53414 -16.83552 -16.57759 -15.93923 -15.56865 -15.43463 -14.84428 -14.62152 -14.21984 -14.11384 -14.04680 -13.94776 -13.82060 -13.79037 -13.61170 -13.48511 -13.37383 -13.25483 -13.02657 -12.66013 -12.55910 -12.39434 -12.15270 -11.96350 -11.74028 -11.62806 -11.54908 -11.49516 -11.01083 -10.82074 -10.50672 -10.18835 -10.04531 -9.84640 -9.69749 -9.53403 -8.77772 -8.67687 -7.00961 -6.03159 -3.48041 2.28371 2.39919 2.76040 3.23277 3.40928 3.43038 3.49533 3.74658 3.84062 4.26419 4.37890 4.43500 4.45568 4.59319 4.83856 4.91738 5.05587 5.13480 5.18903 5.22257 5.26729 5.28008 5.41923 5.42436 5.49397 5.52514 5.58046 5.70923 5.72209 5.74946 5.81486 5.92149 6.10507 6.18488 6.22369 6.34885 6.45530 6.50894 6.58613 6.77798 7.56234 7.88768 7.90889 8.24033 8.82856 9.61151 9.99741 11.12573 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.003270 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.949012 B = 8561.221124 C = 8779.107366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.149 4.149 4 C 0.548 3.452 5 O -0.532 6.532 6 N -0.632 5.632 7 C 0.119 3.881 8 C -0.104 4.104 9 C 0.115 3.885 10 C -0.085 4.085 11 C -0.134 4.134 12 C 0.120 3.880 13 N -0.604 5.604 14 C -0.263 4.263 15 H 0.085 0.915 16 C 0.027 3.973 17 N -0.912 5.912 18 Si 0.893 3.107 19 H -0.287 1.287 20 H -0.305 1.305 21 H -0.271 1.271 22 C 0.165 3.835 23 C 0.475 3.525 24 F -0.174 7.174 25 F -0.181 7.181 26 F -0.172 7.172 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.056 0.944 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.264 0.736 44 H 0.031 0.969 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.595 -5.733 -12.769 16.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.130 4.130 3 C -0.206 4.206 4 C 0.335 3.665 5 O -0.409 6.409 6 N -0.367 5.367 7 C -0.003 4.003 8 C -0.107 4.107 9 C -0.006 4.006 10 C -0.122 4.122 11 C -0.173 4.173 12 C -0.006 4.006 13 N -0.328 5.328 14 C -0.391 4.391 15 H 0.102 0.898 16 C -0.173 4.173 17 N -0.554 5.554 18 Si 0.725 3.275 19 H -0.215 1.215 20 H -0.233 1.233 21 H -0.196 1.196 22 C 0.038 3.962 23 C 0.420 3.580 24 F -0.155 7.155 25 F -0.162 7.162 26 F -0.154 7.154 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.920 -6.211 -12.961 16.916 hybrid contribution 0.676 0.413 0.347 0.865 sum 9.597 -5.798 -12.614 16.877 Atomic orbital electron populations 1.22040 0.89043 1.04535 1.05377 1.22015 1.00866 0.98990 0.91118 1.21987 1.02755 0.90791 1.05096 1.19284 0.81249 0.83073 0.82881 1.90784 1.36920 1.27460 1.85714 1.49963 1.44026 1.38560 1.04113 1.23289 1.01707 0.97403 0.77935 1.22607 0.96997 0.93870 0.97200 1.23467 0.94084 0.90651 0.92423 1.21133 0.95612 0.94446 1.01053 1.22011 0.99361 0.95370 1.00551 1.21420 0.91167 0.93908 0.94057 1.44302 1.04612 1.00253 1.83598 1.18856 0.81413 1.15988 1.22865 0.89768 1.25386 0.95679 0.98643 0.97553 1.69760 1.18618 1.26899 1.40164 0.86865 0.81494 0.78892 0.80280 1.21508 1.23350 1.19586 1.20824 0.96231 0.87493 0.91667 1.19790 0.75964 0.77598 0.84601 1.93192 1.88338 1.37324 1.96674 1.93162 1.88595 1.80857 1.53605 1.93198 1.29183 1.96309 1.96661 0.89146 0.89926 0.90756 0.90773 0.90005 0.89216 0.90091 0.89293 0.88736 0.89684 0.92699 0.91774 0.91770 0.92577 0.95598 0.90866 0.92649 0.95156 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.06 37.16 0.30 -1.14 16 2 C -0.13 -1.42 0.36 -155.66 -0.06 -1.47 16 3 C -0.15 -1.40 8.10 37.16 0.30 -1.10 16 4 C 0.55 7.63 6.48 -10.99 -0.07 7.56 16 5 O -0.53 -9.30 15.57 5.56 0.09 -9.21 16 6 N -0.63 -7.94 3.38 -180.44 -0.61 -8.55 16 7 C 0.12 1.43 7.97 -3.17 -0.03 1.41 16 8 C -0.10 -1.37 0.87 -154.43 -0.13 -1.50 16 9 C 0.12 1.40 5.22 -3.17 -0.02 1.38 16 10 C -0.08 -1.11 5.02 -26.83 -0.13 -1.24 16 11 C -0.13 -1.99 6.01 -26.57 -0.16 -2.15 16 12 C 0.12 2.30 4.12 -3.76 -0.02 2.28 16 13 N -0.60 -12.45 2.74 -172.47 -0.47 -12.93 16 14 C -0.26 -6.61 10.06 -15.06 -0.15 -6.77 16 15 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 16 C 0.03 0.72 5.34 -17.43 -0.09 0.63 16 17 N -0.91 -26.43 13.97 55.49 0.78 -25.65 16 18 Si 0.89 21.19 24.28 -169.99 -4.13 17.06 16 19 H -0.29 -6.53 6.46 56.52 0.37 -6.17 16 20 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16 21 H -0.27 -6.29 6.60 56.52 0.37 -5.92 16 22 C 0.16 2.69 5.70 -3.82 -0.02 2.67 16 23 C 0.48 6.02 1.95 37.15 0.07 6.09 16 24 F -0.17 -2.45 15.96 2.25 0.04 -2.42 16 25 F -0.18 -2.05 16.18 2.25 0.04 -2.01 16 26 F -0.17 -2.44 15.90 2.25 0.04 -2.40 16 27 H 0.09 0.82 5.66 -51.93 -0.29 0.52 16 28 H 0.08 0.65 7.80 -51.93 -0.41 0.25 16 29 H 0.07 0.73 7.80 -51.93 -0.41 0.32 16 30 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 31 H 0.08 0.65 7.65 -51.93 -0.40 0.25 16 32 H 0.09 0.80 5.75 -51.93 -0.30 0.50 16 33 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 34 H 0.09 0.98 8.09 -51.92 -0.42 0.56 16 35 H 0.09 1.15 7.86 -51.93 -0.41 0.74 16 36 H 0.09 0.98 5.15 -51.93 -0.27 0.72 16 37 H 0.05 0.67 8.02 -51.93 -0.42 0.25 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.96 7.37 -51.93 -0.38 0.58 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.50 7.04 -51.92 -0.37 0.14 16 42 H 0.07 1.58 4.35 -51.93 -0.23 1.35 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.11 7.78 -51.93 -0.40 0.71 16 LS Contribution 350.60 15.07 5.28 5.28 Total: -1.00 -30.41 350.60 -5.58 -35.99 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -6.41 Total: -1.81 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.21 Total: 6.65 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.31 Total: -47.13 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.13 Total: 17.06 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -30.41 -5.58 -35.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982125905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.948 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds