Wall clock time and date at job start Tue Mar 31 2020 17:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46660 * 2 1 4 4 C 1.50696 * 109.47076 * 120.00078 * 2 1 3 5 5 O 1.21280 * 119.99950 * 123.49317 * 4 2 1 6 6 N 1.34776 * 120.00029 * 303.48600 * 4 2 1 7 7 C 1.47675 * 134.45113 * 184.52478 * 6 4 2 8 8 C 1.53448 * 85.97302 * 155.73275 * 7 6 4 9 9 C 1.47670 * 134.45605 * 4.54960 * 6 4 2 10 10 C 1.52630 * 113.69979 * 268.84140 * 8 7 6 11 11 C 1.53178 * 109.36660 * 171.34676 * 10 8 7 12 12 C 1.53139 * 109.35881 * 59.05339 * 11 10 8 13 13 N 1.46894 * 109.07679 * 303.52253 * 12 11 10 14 14 C 1.36940 * 120.68983 * 235.34351 * 13 12 11 15 15 H 1.08000 * 119.99755 * 147.52410 * 14 13 12 16 16 C 1.38807 * 119.99879 * 327.52639 * 14 13 12 17 17 N 1.31624 * 119.99843 * 167.00791 * 16 14 13 18 18 Si 1.86797 * 120.00293 * 347.00359 * 16 14 13 19 19 H 1.48506 * 109.47225 * 87.11556 * 18 16 14 20 20 H 1.48501 * 109.47614 * 207.11576 * 18 16 14 21 21 H 1.48507 * 109.46941 * 327.11926 * 18 16 14 22 22 C 1.47115 * 118.62333 * 55.36216 * 13 12 11 23 23 C 1.52995 * 109.46601 * 240.00312 * 2 1 3 24 24 F 1.39901 * 109.47133 * 299.99548 * 23 2 1 25 25 F 1.39898 * 109.47887 * 59.99772 * 23 2 1 26 26 F 1.39902 * 109.46868 * 179.97438 * 23 2 1 27 27 H 1.09003 * 109.46919 * 299.99463 * 1 2 3 28 28 H 1.09001 * 109.47415 * 59.99965 * 1 2 3 29 29 H 1.09006 * 109.47209 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46595 * 174.45433 * 3 2 1 31 31 H 1.09001 * 109.47139 * 294.45368 * 3 2 1 32 32 H 1.08998 * 109.47548 * 54.45827 * 3 2 1 33 33 H 1.08994 * 113.79631 * 41.46557 * 7 6 4 34 34 H 1.09009 * 113.79045 * 269.99485 * 7 6 4 35 35 H 1.09002 * 113.79161 * 90.00665 * 9 6 4 36 36 H 1.08999 * 113.79276 * 318.52868 * 9 6 4 37 37 H 1.08998 * 109.48905 * 51.37269 * 10 8 7 38 38 H 1.09001 * 109.48357 * 291.30890 * 10 8 7 39 39 H 1.08997 * 109.48964 * 299.08873 * 11 10 8 40 40 H 1.09001 * 109.49367 * 179.02270 * 11 10 8 41 41 H 1.09008 * 109.53975 * 63.39950 * 12 11 10 42 42 H 1.09007 * 109.54233 * 183.56275 * 12 11 10 43 43 H 0.97001 * 119.99692 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.63327 * 68.33099 * 22 13 12 45 45 H 1.08996 * 109.63641 * 188.92657 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7809 -1.6582 1.1203 6 7 1.6498 -0.2924 2.4533 7 6 1.9984 -0.6806 3.8348 8 6 1.5609 0.7367 4.2282 9 6 0.7139 0.7369 2.9485 10 6 2.6968 1.7560 4.2121 11 6 2.1203 3.1620 4.4049 12 6 1.3681 3.2239 5.7374 13 7 0.3322 2.1824 5.7527 14 6 -0.9781 2.5033 5.9879 15 1 -1.7662 1.9344 5.5171 16 6 -1.2933 3.5596 6.8314 17 7 -2.5209 4.0335 6.8622 18 14 0.0246 4.3087 7.9229 19 1 0.7456 5.3681 7.1725 20 1 -0.6086 4.9001 9.1289 21 1 0.9847 3.2533 8.3350 22 6 0.7318 0.7874 5.5105 23 6 2.0399 -0.7212 -1.2493 24 9 1.5736 -2.0402 -1.2493 25 9 1.5736 -0.0618 -2.3916 26 9 3.4389 -0.7207 -1.2496 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1254 1.4441 0.0993 31 1 1.7599 1.9269 -0.9355 32 1 1.5978 1.9842 0.8362 33 1 3.0614 -0.8698 3.9835 34 1 1.3634 -1.4663 4.2443 35 1 -0.3031 0.3729 3.0943 36 1 0.7567 1.6739 2.3931 37 1 3.2181 1.7046 3.2562 38 1 3.3948 1.5353 5.0197 39 1 1.4341 3.3887 3.5890 40 1 2.9315 3.8900 4.4112 41 1 2.0657 3.0562 6.5581 42 1 0.9032 4.2036 5.8485 43 1 -2.7412 4.7715 7.4519 44 1 1.3296 0.4271 6.3477 45 1 -0.1567 0.1663 5.3971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982125905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:42 Heat of formation + Delta-G solvation = -148.426110 kcal Electronic energy + Delta-G solvation = -31399.368339 eV Core-core repulsion = 26810.047536 eV Total energy + Delta-G solvation = -4589.320803 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.20959 -48.68509 -48.64826 -42.11057 -40.01059 -37.64618 -36.51894 -34.44643 -32.62748 -31.74158 -28.59056 -27.79237 -27.64875 -27.10423 -26.97824 -23.93611 -23.64189 -22.53363 -20.60904 -19.60215 -19.43540 -19.27440 -18.65846 -18.48690 -17.64955 -17.21857 -16.96117 -16.55884 -15.86641 -15.72708 -15.52490 -15.28735 -15.20699 -15.06462 -14.98163 -14.84056 -14.78041 -14.74402 -14.43216 -14.30666 -14.04344 -13.92160 -13.51539 -13.49771 -13.37782 -13.23981 -13.04285 -12.78395 -12.59848 -12.52129 -12.39631 -12.18936 -11.94170 -11.63468 -11.45575 -11.29010 -11.12204 -10.91276 -10.55881 -9.80079 -8.75722 -8.08422 -5.46988 1.28350 1.34819 1.38820 1.47356 1.54816 1.78391 2.47613 2.54967 2.78267 2.91345 3.12797 3.25846 3.39498 3.56334 3.60412 3.70357 3.82268 3.95491 4.24049 4.27922 4.35283 4.36692 4.46560 4.48256 4.53783 4.57606 4.63091 4.66109 4.71614 4.73762 4.89523 4.91866 5.00409 5.06756 5.07405 5.10045 5.16191 5.24134 5.38103 5.52805 5.98241 6.22752 6.52786 6.84225 7.00622 7.69301 8.11820 9.11221 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.023485 B = 0.003270 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.949012 B = 8561.221124 C = 8779.107366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.147 4.147 4 C 0.545 3.455 5 O -0.572 6.572 6 N -0.627 5.627 7 C 0.121 3.879 8 C -0.098 4.098 9 C 0.118 3.882 10 C -0.079 4.079 11 C -0.125 4.125 12 C 0.113 3.887 13 N -0.616 5.616 14 C -0.236 4.236 15 H 0.058 0.942 16 C -0.033 4.033 17 N -0.963 5.963 18 Si 0.949 3.051 19 H -0.273 1.273 20 H -0.322 1.322 21 H -0.262 1.262 22 C 0.163 3.837 23 C 0.470 3.530 24 F -0.186 7.186 25 F -0.172 7.172 26 F -0.183 7.183 27 H 0.095 0.905 28 H 0.100 0.900 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.048 0.952 43 H 0.259 0.741 44 H 0.038 0.962 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.327 -5.593 -13.659 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 C -0.204 4.204 4 C 0.334 3.666 5 O -0.452 6.452 6 N -0.360 5.360 7 C -0.001 4.001 8 C -0.101 4.101 9 C -0.003 4.003 10 C -0.117 4.117 11 C -0.163 4.163 12 C -0.012 4.012 13 N -0.340 5.340 14 C -0.366 4.366 15 H 0.076 0.924 16 C -0.228 4.228 17 N -0.609 5.609 18 Si 0.779 3.221 19 H -0.200 1.200 20 H -0.251 1.251 21 H -0.186 1.186 22 C 0.038 3.962 23 C 0.416 3.584 24 F -0.167 7.167 25 F -0.154 7.154 26 F -0.165 7.165 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.696 -6.083 -13.865 18.538 hybrid contribution 0.130 0.274 0.573 0.649 sum 10.826 -5.809 -13.292 18.101 Atomic orbital electron populations 1.22086 0.87590 1.04560 1.06575 1.22050 1.01875 0.99490 0.89074 1.22038 1.02496 0.89418 1.06445 1.19687 0.80607 0.82634 0.83705 1.90767 1.38823 1.29298 1.86319 1.49932 1.43634 1.38328 1.04074 1.23335 1.02369 0.96833 0.77576 1.22439 0.96949 0.94959 0.95707 1.23499 0.93878 0.91011 0.91924 1.21108 0.95414 0.92922 1.02230 1.21898 0.99550 0.97283 0.97618 1.21462 0.90827 0.92095 0.96771 1.44406 1.03326 1.02529 1.83752 1.18823 0.83107 1.14099 1.20573 0.92406 1.25972 0.97201 1.00110 0.99479 1.69898 1.20811 1.28348 1.41886 0.85954 0.79359 0.78687 0.78066 1.19977 1.25146 1.18637 1.20940 0.96797 0.84974 0.93532 1.20047 0.75509 0.77350 0.85504 1.93166 1.88405 1.38358 1.96780 1.93175 1.88395 1.80532 1.53251 1.93173 1.30181 1.96336 1.96765 0.88583 0.88081 0.91372 0.91199 0.88248 0.88374 0.89478 0.88284 0.88733 0.88535 0.91063 0.91050 0.91819 0.90350 0.95268 0.93402 0.93232 0.94427 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.06 71.98 0.58 -1.91 16 2 C -0.12 -2.46 0.36 -52.93 -0.02 -2.48 16 3 C -0.15 -2.32 8.10 71.98 0.58 -1.73 16 4 C 0.55 14.16 6.48 87.66 0.57 14.73 16 5 O -0.57 -19.38 15.57 -3.03 -0.05 -19.43 16 6 N -0.63 -14.15 3.38 -843.19 -2.85 -17.00 16 7 C 0.12 2.58 7.97 86.30 0.69 3.27 16 8 C -0.10 -2.29 0.87 -52.04 -0.05 -2.34 16 9 C 0.12 2.54 5.22 86.30 0.45 3.00 16 10 C -0.08 -1.76 5.02 30.53 0.15 -1.61 16 11 C -0.12 -3.27 6.01 30.70 0.18 -3.08 16 12 C 0.11 4.07 4.12 86.35 0.36 4.43 16 13 N -0.62 -24.43 2.74 -699.56 -1.92 -26.35 16 14 C -0.24 -11.89 10.06 84.03 0.85 -11.04 16 15 H 0.06 3.17 8.06 -2.91 -0.02 3.15 16 16 C -0.03 -1.80 5.34 84.86 0.45 -1.34 16 17 N -0.96 -57.33 13.97 21.65 0.30 -57.03 16 18 Si 0.95 43.87 24.28 68.60 1.67 45.53 16 19 H -0.27 -11.82 6.46 99.48 0.64 -11.18 16 20 H -0.32 -15.61 7.11 99.48 0.71 -14.91 16 21 H -0.26 -11.52 6.60 99.48 0.66 -10.86 16 22 C 0.16 4.98 5.70 86.19 0.49 5.47 16 23 C 0.47 11.24 1.95 71.98 0.14 11.38 16 24 F -0.19 -5.10 15.96 44.97 0.72 -4.38 16 25 F -0.17 -3.56 16.18 44.97 0.73 -2.83 16 26 F -0.18 -4.99 15.90 44.97 0.72 -4.28 16 27 H 0.10 1.48 5.66 -2.39 -0.01 1.46 16 28 H 0.10 1.30 7.80 -2.39 -0.02 1.28 16 29 H 0.07 1.22 7.80 -2.38 -0.02 1.20 16 30 H 0.07 1.18 7.96 -2.38 -0.02 1.16 16 31 H 0.10 1.23 7.65 -2.39 -0.02 1.21 16 32 H 0.10 1.38 5.75 -2.39 -0.01 1.37 16 33 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 34 H 0.10 1.94 8.09 -2.38 -0.02 1.92 16 35 H 0.09 2.09 7.86 -2.39 -0.02 2.08 16 36 H 0.10 1.90 5.15 -2.39 -0.01 1.89 16 37 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.06 1.69 7.37 -2.39 -0.02 1.67 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.03 1.04 7.04 -2.38 -0.02 1.03 16 42 H 0.05 1.97 4.35 -2.38 -0.01 1.96 16 43 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 44 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 2.03 7.78 -2.39 -0.02 2.01 16 Total: -1.00 -66.60 350.60 5.65 -60.95 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.90 Total: 8.08 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: 5.43 Total: 16.73 kcal Atomic # 7 Polarization: -95.91 SS G_CDS: -4.46 Total: -100.37 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.05 Total: -19.43 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 2.16 Total: -11.49 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.53 kcal Total: -66.60 5.65 -60.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982125905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.472 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds