Wall clock time and date at job start Tue Mar 31 2020 17:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 C 1.50702 * 109.46977 * 119.99811 * 2 1 3 5 5 O 1.21276 * 119.99750 * 114.52029 * 4 2 1 6 6 N 1.34774 * 119.99935 * 294.52244 * 4 2 1 7 7 C 1.49626 * 126.07019 * 174.83999 * 6 4 2 8 8 C 1.51519 * 102.49182 * 154.35194 * 7 6 4 9 9 H 1.08995 * 111.12706 * 288.13728 * 8 7 6 10 10 C 1.51565 * 123.80054 * 151.79741 * 8 7 6 11 11 C 1.55462 * 102.22190 * 208.28793 * 10 8 7 12 12 C 1.56004 * 105.84342 * 24.94321 * 11 10 8 13 13 H 1.09000 * 110.64425 * 125.97339 * 12 11 10 14 14 N 1.46496 * 110.52429 * 248.66833 * 12 11 10 15 15 C 1.36939 * 120.00018 * 269.56763 * 14 12 11 16 16 H 1.08001 * 119.99518 * 359.97438 * 15 14 12 17 17 C 1.38805 * 120.00286 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00066 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47327 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47216 * 300.00340 * 19 17 15 22 22 H 1.48504 * 109.46949 * 60.00554 * 19 17 15 23 23 C 1.49714 * 103.98665 * 7.29178 * 12 11 10 24 24 H 1.08997 * 108.54880 * 77.97694 * 23 12 11 25 25 C 1.48092 * 126.28893 * 353.87462 * 6 4 2 26 26 C 1.53003 * 109.47122 * 239.99863 * 2 1 3 27 27 F 1.39904 * 109.46951 * 300.00089 * 26 2 1 28 28 F 1.39896 * 109.46798 * 59.99885 * 26 2 1 29 29 F 1.39897 * 109.46863 * 179.97438 * 26 2 1 30 30 H 1.09002 * 109.47394 * 301.84596 * 1 2 3 31 31 H 1.08998 * 109.47241 * 61.84577 * 1 2 3 32 32 H 1.09008 * 109.47220 * 181.84323 * 1 2 3 33 33 H 1.08998 * 109.47261 * 171.15757 * 3 2 1 34 34 H 1.09006 * 109.46933 * 291.15933 * 3 2 1 35 35 H 1.08995 * 109.47107 * 51.15519 * 3 2 1 36 36 H 1.08997 * 110.80511 * 36.10144 * 7 6 4 37 37 H 1.08995 * 110.97099 * 272.67734 * 7 6 4 38 38 H 1.09006 * 110.95716 * 325.94954 * 10 8 7 39 39 H 1.09003 * 110.96026 * 89.64359 * 10 8 7 40 40 H 1.08997 * 109.87689 * 265.98752 * 11 10 8 41 41 H 1.09001 * 110.42781 * 144.18724 * 11 10 8 42 42 H 0.97007 * 120.00349 * 89.56240 * 14 12 11 43 43 H 0.97002 * 119.99526 * 359.97438 * 18 17 15 44 44 H 1.09003 * 109.84107 * 54.29463 * 25 6 4 45 45 H 1.08997 * 110.37614 * 292.27663 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6454 -1.7511 1.1220 6 7 1.8002 -0.1891 2.4515 7 6 2.1385 -0.8285 3.7612 8 6 2.2837 0.3664 4.6815 9 1 3.1948 0.9229 4.4620 10 6 2.0189 0.3189 6.1731 11 6 1.5832 1.7801 6.4766 12 6 1.0216 2.3444 5.1351 13 1 0.0158 2.7402 5.2758 14 7 1.9098 3.3801 4.6017 15 6 1.7165 4.6915 4.9454 16 1 0.9088 4.9622 5.6094 17 6 2.5583 5.6728 4.4405 18 7 3.5423 5.3430 3.6308 19 14 2.2941 7.4617 4.9088 20 1 3.3186 8.3047 4.2416 21 1 0.9406 7.8922 4.4752 22 1 2.4127 7.6105 6.3816 23 6 0.9954 1.1558 4.2252 24 1 0.1282 0.5455 4.4769 25 6 1.1837 1.1260 2.7403 26 6 2.0400 -0.7213 -1.2492 27 9 1.5737 -2.0403 -1.2492 28 9 1.5737 -0.0618 -2.3915 29 9 3.4390 -0.7208 -1.2495 30 1 -0.3634 0.5422 0.8730 31 1 -0.3633 0.4849 -0.9060 32 1 -0.3634 -1.0272 0.0331 33 1 3.1185 1.4466 0.1580 34 1 1.8113 1.9087 -0.9584 35 1 1.5534 1.9999 0.8004 36 1 3.0761 -1.3801 3.6921 37 1 1.3319 -1.4801 4.0971 38 1 1.2095 -0.3739 6.4036 39 1 2.9233 0.0551 6.7215 40 1 2.4450 2.3643 6.7992 41 1 0.8094 1.7947 7.2442 42 1 2.6350 3.1370 4.0050 43 1 3.6792 4.4141 3.3873 44 1 0.2215 1.2028 2.2339 45 1 1.8453 1.9328 2.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026401509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:48 Heat of formation + Delta-G solvation = -154.370348 kcal Electronic energy + Delta-G solvation = -31388.227148 eV Core-core repulsion = 26798.648584 eV Total energy + Delta-G solvation = -4589.578564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.14890 -47.64625 -47.53749 -41.03231 -39.14128 -35.79834 -35.33710 -33.68522 -30.92805 -29.51995 -28.61359 -27.79488 -26.40268 -25.41414 -24.20928 -23.30672 -21.88966 -20.17931 -19.83141 -19.06102 -18.43451 -18.35965 -17.78638 -17.31956 -16.49940 -16.04977 -15.54042 -15.17388 -14.87748 -14.57846 -14.32663 -14.31102 -14.09164 -13.96886 -13.76109 -13.73767 -13.69985 -13.57697 -13.35164 -13.16777 -12.83493 -12.79705 -12.35564 -12.30862 -11.95553 -11.73532 -11.65177 -11.31463 -11.21306 -11.00059 -10.80063 -10.75031 -10.49642 -10.30780 -10.01207 -9.95799 -9.78750 -9.24328 -9.01072 -8.74696 -7.14897 -6.18423 -3.20137 2.32347 2.40092 2.82369 3.46772 3.49062 3.55132 3.67011 3.78901 3.90679 4.08041 4.39542 4.53116 4.59064 4.66191 4.79855 4.88857 5.05329 5.18804 5.25639 5.31207 5.33783 5.38901 5.47051 5.51381 5.51501 5.54579 5.59409 5.69137 5.78221 5.83906 5.90961 5.96977 6.01817 6.08414 6.20726 6.21810 6.34891 6.45758 6.62376 6.87866 7.31929 7.73078 7.88002 8.65955 9.11164 9.97718 10.12084 11.28958 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.003904 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.207179 B = 7169.742750 C = 8559.675070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.164 4.164 4 C 0.546 3.454 5 O -0.529 6.529 6 N -0.612 5.612 7 C 0.126 3.874 8 C -0.125 4.125 9 H 0.090 0.910 10 C -0.097 4.097 11 C -0.146 4.146 12 C 0.203 3.797 13 H 0.059 0.941 14 N -0.729 5.729 15 C -0.333 4.333 16 H 0.065 0.935 17 C -0.042 4.042 18 N -0.941 5.941 19 Si 1.077 2.923 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.295 1.295 23 C -0.125 4.125 24 H 0.073 0.927 25 C 0.112 3.888 26 C 0.476 3.524 27 F -0.173 7.173 28 F -0.180 7.180 29 F -0.173 7.173 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.366 0.634 43 H 0.254 0.746 44 H 0.076 0.924 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -11.909 -4.125 14.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.131 4.131 3 C -0.221 4.221 4 C 0.333 3.667 5 O -0.405 6.405 6 N -0.346 5.346 7 C 0.005 3.995 8 C -0.144 4.144 9 H 0.109 0.891 10 C -0.136 4.136 11 C -0.186 4.186 12 C 0.092 3.908 13 H 0.077 0.923 14 N -0.372 5.372 15 C -0.464 4.464 16 H 0.083 0.917 17 C -0.239 4.239 18 N -0.587 5.587 19 Si 0.908 3.092 20 H -0.211 1.211 21 H -0.223 1.223 22 H -0.223 1.223 23 C -0.145 4.145 24 H 0.092 0.908 25 C -0.010 4.010 26 C 0.421 3.579 27 F -0.154 7.154 28 F -0.161 7.161 29 F -0.154 7.154 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.200 0.800 43 H 0.065 0.935 44 H 0.094 0.906 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.674 -10.874 -4.388 13.492 hybrid contribution -0.282 -1.730 -0.093 1.755 sum -6.956 -12.604 -4.481 15.077 Atomic orbital electron populations 1.22036 0.89145 1.04385 1.05290 1.22019 1.00766 0.99225 0.91045 1.22275 1.03364 0.90638 1.05799 1.19285 0.79674 0.84775 0.82992 1.90784 1.40382 1.23583 1.85750 1.49293 1.60532 1.19972 1.04811 1.21685 1.01247 0.95018 0.81563 1.22637 0.99621 0.96393 0.95742 0.89148 1.21664 1.00633 0.98122 0.93144 1.23688 1.01303 0.94154 0.99496 1.19961 0.94500 0.86571 0.89756 0.92275 1.42435 1.34992 1.03114 1.56611 1.20034 1.14480 0.84381 1.27496 0.91675 1.25720 0.95415 1.04347 0.98455 1.70921 1.31893 1.19144 1.36697 0.83275 0.75413 0.75134 0.75375 1.21082 1.22256 1.22293 1.22112 0.98442 1.00360 0.93585 0.90845 1.21282 0.98386 0.84706 0.96592 1.19755 0.75969 0.77563 0.84590 1.93192 1.88312 1.37247 1.96670 1.93162 1.88573 1.80857 1.53546 1.93202 1.29220 1.96317 1.96668 0.89203 0.89782 0.90809 0.90500 0.89942 0.88175 0.90203 0.90909 0.91906 0.91893 0.90690 0.92591 0.79981 0.93521 0.90632 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.10 37.16 0.30 -1.18 16 2 C -0.13 -1.58 0.32 -155.66 -0.05 -1.62 16 3 C -0.16 -1.97 7.59 37.16 0.28 -1.69 16 4 C 0.55 8.12 6.35 -10.99 -0.07 8.06 16 5 O -0.53 -9.52 15.16 5.56 0.08 -9.44 16 6 N -0.61 -8.31 3.40 -172.59 -0.59 -8.89 16 7 C 0.13 1.61 6.74 -3.05 -0.02 1.59 16 8 C -0.12 -1.67 3.05 -89.45 -0.27 -1.94 16 9 H 0.09 1.44 7.88 -51.93 -0.41 1.03 16 10 C -0.10 -1.22 6.58 -26.15 -0.17 -1.39 16 11 C -0.15 -2.23 6.71 -23.82 -0.16 -2.39 16 12 C 0.20 3.46 3.47 -67.95 -0.24 3.22 16 13 H 0.06 1.04 8.09 -51.93 -0.42 0.62 16 14 N -0.73 -15.93 4.85 -53.45 -0.26 -16.19 16 15 C -0.33 -8.51 9.96 -15.06 -0.15 -8.66 16 16 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 17 C -0.04 -1.12 5.50 -17.43 -0.10 -1.22 16 18 N -0.94 -27.32 13.70 55.49 0.76 -26.56 16 19 Si 1.08 24.53 29.92 -169.99 -5.09 19.44 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.30 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.30 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.13 -1.72 2.32 -91.23 -0.21 -1.93 16 24 H 0.07 0.89 8.00 -51.93 -0.42 0.48 16 25 C 0.11 1.48 4.52 -4.79 -0.02 1.45 16 26 C 0.48 6.54 1.96 37.16 0.07 6.61 16 27 F -0.17 -2.54 15.79 2.25 0.04 -2.50 16 28 F -0.18 -2.24 16.10 2.25 0.04 -2.20 16 29 F -0.17 -2.68 16.18 2.25 0.04 -2.64 16 30 H 0.09 0.80 5.24 -51.93 -0.27 0.53 16 31 H 0.08 0.70 7.75 -51.93 -0.40 0.30 16 32 H 0.07 0.72 7.86 -51.92 -0.41 0.31 16 33 H 0.08 1.01 8.02 -51.93 -0.42 0.59 16 34 H 0.08 0.87 7.57 -51.93 -0.39 0.48 16 35 H 0.10 1.20 4.63 -51.93 -0.24 0.96 16 36 H 0.08 1.07 8.04 -51.93 -0.42 0.66 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.36 7.98 -51.93 -0.41 0.95 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.37 8.34 5.50 -40.82 -0.22 8.12 16 43 H 0.25 7.20 6.77 -40.82 -0.28 6.93 16 44 H 0.08 0.86 5.28 -51.93 -0.27 0.59 16 45 H 0.09 1.35 5.42 -51.93 -0.28 1.07 16 LS Contribution 354.00 15.07 5.33 5.33 Total: -1.00 -30.33 354.00 -6.61 -36.94 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.16 Total: 7.81 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -0.80 Total: -1.10 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -0.09 Total: -51.64 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.11 Total: -7.35 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.09 Total: 19.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.33 -6.61 -36.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026401509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.429 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds