Wall clock time and date at job start Tue Mar 31 2020 17:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 C 1.50702 * 109.46977 * 119.99811 * 2 1 3 5 5 O 1.21276 * 119.99750 * 114.52029 * 4 2 1 6 6 N 1.34774 * 119.99935 * 294.52244 * 4 2 1 7 7 C 1.49626 * 126.07019 * 174.83999 * 6 4 2 8 8 C 1.51519 * 102.49182 * 154.35194 * 7 6 4 9 9 H 1.08995 * 111.12706 * 288.13728 * 8 7 6 10 10 C 1.51565 * 123.80054 * 151.79741 * 8 7 6 11 11 C 1.55462 * 102.22190 * 208.28793 * 10 8 7 12 12 C 1.56004 * 105.84342 * 24.94321 * 11 10 8 13 13 H 1.09000 * 110.64425 * 125.97339 * 12 11 10 14 14 N 1.46496 * 110.52429 * 248.66833 * 12 11 10 15 15 C 1.36939 * 120.00018 * 269.56763 * 14 12 11 16 16 H 1.08001 * 119.99518 * 359.97438 * 15 14 12 17 17 C 1.38805 * 120.00286 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00170 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00066 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47327 * 180.02562 * 19 17 15 21 21 H 1.48500 * 109.47216 * 300.00340 * 19 17 15 22 22 H 1.48504 * 109.46949 * 60.00554 * 19 17 15 23 23 C 1.49714 * 103.98665 * 7.29178 * 12 11 10 24 24 H 1.08997 * 108.54880 * 77.97694 * 23 12 11 25 25 C 1.48092 * 126.28893 * 353.87462 * 6 4 2 26 26 C 1.53003 * 109.47122 * 239.99863 * 2 1 3 27 27 F 1.39904 * 109.46951 * 300.00089 * 26 2 1 28 28 F 1.39896 * 109.46798 * 59.99885 * 26 2 1 29 29 F 1.39897 * 109.46863 * 179.97438 * 26 2 1 30 30 H 1.09002 * 109.47394 * 301.84596 * 1 2 3 31 31 H 1.08998 * 109.47241 * 61.84577 * 1 2 3 32 32 H 1.09008 * 109.47220 * 181.84323 * 1 2 3 33 33 H 1.08998 * 109.47261 * 171.15757 * 3 2 1 34 34 H 1.09006 * 109.46933 * 291.15933 * 3 2 1 35 35 H 1.08995 * 109.47107 * 51.15519 * 3 2 1 36 36 H 1.08997 * 110.80511 * 36.10144 * 7 6 4 37 37 H 1.08995 * 110.97099 * 272.67734 * 7 6 4 38 38 H 1.09006 * 110.95716 * 325.94954 * 10 8 7 39 39 H 1.09003 * 110.96026 * 89.64359 * 10 8 7 40 40 H 1.08997 * 109.87689 * 265.98752 * 11 10 8 41 41 H 1.09001 * 110.42781 * 144.18724 * 11 10 8 42 42 H 0.97007 * 120.00349 * 89.56240 * 14 12 11 43 43 H 0.97002 * 119.99526 * 359.97438 * 18 17 15 44 44 H 1.09003 * 109.84107 * 54.29463 * 25 6 4 45 45 H 1.08997 * 110.37614 * 292.27663 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.6454 -1.7511 1.1220 6 7 1.8002 -0.1891 2.4515 7 6 2.1385 -0.8285 3.7612 8 6 2.2837 0.3664 4.6815 9 1 3.1948 0.9229 4.4620 10 6 2.0189 0.3189 6.1731 11 6 1.5832 1.7801 6.4766 12 6 1.0216 2.3444 5.1351 13 1 0.0158 2.7402 5.2758 14 7 1.9098 3.3801 4.6017 15 6 1.7165 4.6915 4.9454 16 1 0.9088 4.9622 5.6094 17 6 2.5583 5.6728 4.4405 18 7 3.5423 5.3430 3.6308 19 14 2.2941 7.4617 4.9088 20 1 3.3186 8.3047 4.2416 21 1 0.9406 7.8922 4.4752 22 1 2.4127 7.6105 6.3816 23 6 0.9954 1.1558 4.2252 24 1 0.1282 0.5455 4.4769 25 6 1.1837 1.1260 2.7403 26 6 2.0400 -0.7213 -1.2492 27 9 1.5737 -2.0403 -1.2492 28 9 1.5737 -0.0618 -2.3915 29 9 3.4390 -0.7208 -1.2495 30 1 -0.3634 0.5422 0.8730 31 1 -0.3633 0.4849 -0.9060 32 1 -0.3634 -1.0272 0.0331 33 1 3.1185 1.4466 0.1580 34 1 1.8113 1.9087 -0.9584 35 1 1.5534 1.9999 0.8004 36 1 3.0761 -1.3801 3.6921 37 1 1.3319 -1.4801 4.0971 38 1 1.2095 -0.3739 6.4036 39 1 2.9233 0.0551 6.7215 40 1 2.4450 2.3643 6.7992 41 1 0.8094 1.7947 7.2442 42 1 2.6350 3.1370 4.0050 43 1 3.6792 4.4141 3.3873 44 1 0.2215 1.2028 2.2339 45 1 1.8453 1.9328 2.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026401509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:47 Heat of formation + Delta-G solvation = -172.122427 kcal Electronic energy + Delta-G solvation = -31388.996936 eV Core-core repulsion = 26798.648584 eV Total energy + Delta-G solvation = -4590.348352 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.24799 -48.72409 -48.68106 -42.17232 -40.33530 -37.03730 -36.60276 -35.24955 -32.49390 -30.71325 -29.96662 -28.67826 -27.47891 -26.74142 -25.42958 -25.08124 -22.97713 -21.28081 -20.92709 -20.37369 -19.57878 -19.46882 -19.42845 -18.58393 -17.68704 -17.20915 -16.81687 -16.50737 -16.03901 -15.78980 -15.61450 -15.46496 -15.41000 -15.17939 -15.08888 -15.00606 -14.86054 -14.80506 -14.47165 -14.22325 -13.90633 -13.85464 -13.46529 -13.35474 -13.28148 -12.88699 -12.75182 -12.57435 -12.54194 -12.35433 -12.21422 -12.02754 -11.91456 -11.69724 -11.53986 -11.18805 -11.09469 -10.91801 -10.84436 -9.87400 -9.02814 -8.28985 -5.23282 1.20088 1.31568 1.62949 1.71072 1.74729 1.86987 2.49136 2.69703 2.76425 2.86598 2.98138 3.36651 3.48603 3.54735 3.62716 3.67734 3.78213 3.93027 4.07685 4.15750 4.31241 4.32967 4.40077 4.44716 4.49413 4.53470 4.60479 4.62783 4.66070 4.77056 4.84494 4.89963 4.94112 4.98234 5.05739 5.13770 5.15897 5.29643 5.39286 5.56509 5.73294 6.19313 6.58214 6.73556 7.17825 8.08869 8.19954 9.22263 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.003904 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.207179 B = 7169.742750 C = 8559.675070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.161 4.161 4 C 0.542 3.458 5 O -0.565 6.565 6 N -0.608 5.608 7 C 0.127 3.873 8 C -0.116 4.116 9 H 0.055 0.945 10 C -0.085 4.085 11 C -0.141 4.141 12 C 0.194 3.806 13 H 0.059 0.941 14 N -0.739 5.739 15 C -0.320 4.320 16 H 0.068 0.932 17 C -0.102 4.102 18 N -0.979 5.979 19 Si 1.120 2.880 20 H -0.300 1.300 21 H -0.277 1.277 22 H -0.283 1.283 23 C -0.122 4.122 24 H 0.106 0.894 25 C 0.115 3.885 26 C 0.472 3.528 27 F -0.179 7.179 28 F -0.171 7.171 29 F -0.188 7.188 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.359 0.641 43 H 0.243 0.757 44 H 0.102 0.898 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.973 -12.590 -3.389 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.125 4.125 3 C -0.218 4.218 4 C 0.329 3.671 5 O -0.445 6.445 6 N -0.341 5.341 7 C 0.007 3.993 8 C -0.136 4.136 9 H 0.074 0.926 10 C -0.123 4.123 11 C -0.181 4.181 12 C 0.085 3.915 13 H 0.077 0.923 14 N -0.381 5.381 15 C -0.452 4.452 16 H 0.086 0.914 17 C -0.293 4.293 18 N -0.627 5.627 19 Si 0.946 3.054 20 H -0.227 1.227 21 H -0.203 1.203 22 H -0.209 1.209 23 C -0.141 4.141 24 H 0.124 0.876 25 C -0.006 4.006 26 C 0.417 3.583 27 F -0.160 7.160 28 F -0.153 7.153 29 F -0.169 7.169 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.191 0.809 43 H 0.053 0.947 44 H 0.119 0.881 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.281 -11.582 -3.609 15.274 hybrid contribution 0.494 -1.557 -0.280 1.657 sum -8.787 -13.138 -3.889 16.277 Atomic orbital electron populations 1.22109 0.86597 1.05069 1.06770 1.22039 1.02656 0.98512 0.89264 1.22257 1.02144 0.90625 1.06736 1.19674 0.79130 0.84444 0.83821 1.90764 1.42064 1.25326 1.86304 1.49305 1.59941 1.19921 1.04905 1.21764 1.01896 0.94776 0.80903 1.22503 0.98060 0.96299 0.96707 0.92602 1.21618 1.01980 0.96653 0.92086 1.23526 1.00352 0.95473 0.98748 1.20229 0.93369 0.86573 0.91337 0.92330 1.42590 1.35609 1.03117 1.56764 1.20352 1.13241 0.85974 1.25600 0.91426 1.26888 0.95602 1.07870 0.98984 1.71016 1.33946 1.18522 1.39263 0.82702 0.75658 0.71362 0.75636 1.22675 1.20290 1.20920 1.22002 0.99758 0.98948 0.93430 0.87589 1.21264 0.98932 0.83744 0.96672 1.19978 0.75345 0.77535 0.85418 1.93176 1.88274 1.37818 1.96749 1.93175 1.88339 1.80577 1.53165 1.93171 1.30588 1.96378 1.96785 0.88050 0.87977 0.90494 0.92424 0.88331 0.88043 0.91244 0.88135 0.88597 0.91462 0.94242 0.90645 0.80883 0.94665 0.88050 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.10 71.98 0.58 -1.93 16 2 C -0.12 -2.87 0.32 -52.93 -0.02 -2.89 16 3 C -0.16 -3.78 7.59 71.98 0.55 -3.24 16 4 C 0.54 15.71 6.35 87.66 0.56 16.26 16 5 O -0.57 -20.32 15.16 -3.02 -0.05 -20.37 16 6 N -0.61 -15.66 3.40 -818.35 -2.78 -18.44 16 7 C 0.13 3.00 6.74 85.29 0.57 3.57 16 8 C -0.12 -2.94 3.05 -10.03 -0.03 -2.97 16 9 H 0.06 1.81 7.88 -2.39 -0.02 1.80 16 10 C -0.09 -1.90 6.58 30.97 0.20 -1.69 16 11 C -0.14 -4.06 6.71 32.48 0.22 -3.84 16 12 C 0.19 6.30 3.47 44.98 0.16 6.46 16 13 H 0.06 1.92 8.09 -2.39 -0.02 1.90 16 14 N -0.74 -32.44 4.85 -323.01 -1.57 -34.01 16 15 C -0.32 -16.34 9.96 84.03 0.84 -15.50 16 16 H 0.07 3.36 7.83 -2.91 -0.02 3.34 16 17 C -0.10 -5.56 5.50 84.86 0.47 -5.09 16 18 N -0.98 -58.34 13.70 21.65 0.30 -58.04 16 19 Si 1.12 49.56 29.92 68.60 2.05 51.61 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.28 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 23 C -0.12 -3.05 2.32 -11.19 -0.03 -3.07 16 24 H 0.11 2.07 8.00 -2.39 -0.02 2.05 16 25 C 0.11 2.85 4.52 85.02 0.38 3.23 16 26 C 0.47 12.66 1.96 71.98 0.14 12.80 16 27 F -0.18 -5.13 15.79 44.97 0.71 -4.42 16 28 F -0.17 -4.04 16.10 44.97 0.72 -3.32 16 29 F -0.19 -5.91 16.18 44.97 0.73 -5.18 16 30 H 0.10 1.47 5.24 -2.39 -0.01 1.45 16 31 H 0.10 1.38 7.75 -2.39 -0.02 1.36 16 32 H 0.08 1.29 7.86 -2.38 -0.02 1.27 16 33 H 0.06 1.57 8.02 -2.39 -0.02 1.55 16 34 H 0.10 1.97 7.57 -2.38 -0.02 1.96 16 35 H 0.10 2.37 4.63 -2.39 -0.01 2.36 16 36 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 37 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.42 7.98 -2.39 -0.02 1.40 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 42 H 0.36 16.86 5.50 -92.70 -0.51 16.35 16 43 H 0.24 14.38 6.77 -92.71 -0.63 13.75 16 44 H 0.10 2.00 5.28 -2.39 -0.01 1.98 16 45 H 0.06 1.96 5.42 -2.39 -0.01 1.94 16 Total: -1.00 -67.27 354.00 5.37 -61.90 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.66 Total: 28.16 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 4.59 Total: 2.10 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -4.05 Total: -110.49 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 9 Polarization: -15.08 SS G_CDS: 2.16 Total: -12.91 kcal Atomic # 14 Polarization: 49.56 SS G_CDS: 2.05 Total: 51.61 kcal Total: -67.27 5.37 -61.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026401509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.224 kcal (2) G-P(sol) polarization free energy of solvation -67.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds