Wall clock time and date at job start Tue Mar 31 2020 17:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46985 * 2 1 4 4 C 1.50701 * 109.47014 * 120.00046 * 2 1 3 5 5 O 1.21279 * 119.99763 * 122.84983 * 4 2 1 6 6 N 1.34776 * 120.00045 * 302.85754 * 4 2 1 7 7 C 1.46895 * 120.46094 * 354.69331 * 6 4 2 8 8 C 1.53359 * 108.74097 * 124.34976 * 7 6 4 9 9 C 1.52560 * 109.12546 * 52.26042 * 8 7 6 10 10 C 1.52956 * 114.06507 * 75.54454 * 9 8 7 11 11 N 1.47161 * 87.85466 * 139.43831 * 10 9 8 12 12 C 1.36934 * 136.00030 * 153.33900 * 11 10 9 13 13 H 1.08003 * 119.99994 * 359.97438 * 12 11 10 14 14 C 1.38819 * 120.00106 * 180.02562 * 12 11 10 15 15 N 1.31615 * 119.99571 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47096 * 59.99757 * 16 14 12 18 18 H 1.48493 * 109.47231 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47232 * 300.00302 * 16 14 12 20 20 C 1.47168 * 87.99976 * 333.33927 * 11 10 9 21 21 C 1.52557 * 113.43067 * 302.67128 * 9 8 7 22 22 C 1.46885 * 120.46528 * 174.68074 * 6 4 2 23 23 C 1.53001 * 109.47050 * 240.00034 * 2 1 3 24 24 F 1.39903 * 109.47244 * 300.00022 * 23 2 1 25 25 F 1.39896 * 109.47190 * 59.99798 * 23 2 1 26 26 F 1.39898 * 109.47049 * 180.02562 * 23 2 1 27 27 H 1.08999 * 109.47138 * 304.81160 * 1 2 3 28 28 H 1.09010 * 109.47222 * 64.80981 * 1 2 3 29 29 H 1.09006 * 109.47210 * 184.80649 * 1 2 3 30 30 H 1.09003 * 109.46986 * 175.23360 * 3 2 1 31 31 H 1.09002 * 109.47475 * 295.23672 * 3 2 1 32 32 H 1.09004 * 109.47057 * 55.24046 * 3 2 1 33 33 H 1.09000 * 109.59539 * 4.57193 * 7 6 4 34 34 H 1.08997 * 109.59263 * 244.12606 * 7 6 4 35 35 H 1.09000 * 109.52672 * 292.36579 * 8 7 6 36 36 H 1.08994 * 109.52902 * 172.15705 * 8 7 6 37 37 H 1.09000 * 113.48554 * 24.68845 * 10 9 8 38 38 H 1.08998 * 113.49119 * 254.18877 * 10 9 8 39 39 H 0.97005 * 119.99852 * 179.97438 * 15 14 12 40 40 H 1.08999 * 113.49325 * 141.41479 * 20 11 10 41 41 H 1.08998 * 113.48377 * 271.92192 * 20 11 10 42 42 H 1.09003 * 109.52488 * 177.21977 * 21 9 8 43 43 H 1.09006 * 109.52757 * 297.42394 * 21 9 8 44 44 H 1.09001 * 109.58992 * 355.42196 * 22 6 4 45 45 H 1.08999 * 109.59155 * 115.85825 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7716 -1.6655 1.1199 6 7 1.6599 -0.2845 2.4537 7 6 0.8605 0.9385 2.6050 8 6 -0.4140 0.6004 3.3881 9 6 -0.0320 -0.1200 4.6776 10 6 0.5395 0.7982 5.7592 11 7 -0.2423 0.0332 6.7437 12 6 -0.1360 -0.2520 8.0788 13 1 0.6965 0.1334 8.6488 14 6 -1.0978 -1.0374 8.6995 15 7 -2.1115 -1.5083 8.0045 16 14 -0.9525 -1.4270 10.5206 17 1 -0.9642 -0.1629 11.2997 18 1 -2.0966 -2.2768 10.9378 19 1 0.3192 -2.1516 10.7719 20 6 -1.1883 -0.2909 5.6640 21 6 0.7818 -1.3893 4.4451 22 6 2.0475 -1.0370 3.6542 23 6 2.0400 -0.7212 -1.2493 24 9 1.5737 -2.0403 -1.2493 25 9 1.5736 -0.0618 -2.3915 26 9 3.4390 -0.7218 -1.2490 27 1 -0.3633 0.5867 0.8437 28 1 -0.3634 0.4374 -0.9300 29 1 -0.3634 -1.0241 0.0861 30 1 3.1266 1.4436 0.0854 31 1 1.7480 1.9311 -0.9296 32 1 1.6086 1.9803 0.8443 33 1 0.5934 1.3247 1.6213 34 1 1.4364 1.6866 3.1496 35 1 -1.0517 -0.0458 2.7849 36 1 -0.9484 1.5194 3.6287 37 1 0.2195 1.8356 5.6618 38 1 1.6172 0.6990 5.8884 39 1 -2.7834 -2.0575 8.4381 40 1 -1.5706 -1.3105 5.7128 41 1 -1.9775 0.4507 5.5408 42 1 1.0610 -1.8239 5.4050 43 1 0.1860 -2.1055 3.8792 44 1 2.5622 -1.9522 3.3616 45 1 2.7061 -0.4262 4.2716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035840647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:53 Heat of formation + Delta-G solvation = -112.020160 kcal Electronic energy + Delta-G solvation = -31265.508034 eV Core-core repulsion = 26677.765912 eV Total energy + Delta-G solvation = -4587.742122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.23729 -47.74181 -47.61346 -40.96772 -39.07865 -36.30440 -35.55529 -32.52529 -31.07133 -30.49295 -27.95893 -27.13741 -26.46081 -25.03255 -24.23872 -23.46006 -22.26041 -21.15847 -20.10008 -18.62917 -18.44755 -17.69292 -17.35862 -16.74195 -16.53904 -15.67557 -15.47608 -15.01133 -14.84153 -14.68166 -14.54674 -14.34329 -14.08021 -14.00135 -13.85589 -13.82606 -13.76332 -13.68268 -13.40572 -12.83880 -12.66838 -12.62369 -12.47282 -12.22334 -12.16601 -11.84682 -11.71213 -11.31717 -11.13575 -10.98491 -10.90930 -10.83212 -10.42923 -10.26095 -9.97750 -9.76912 -9.58365 -9.27131 -8.83069 -8.55785 -6.90497 -5.79773 -3.11867 2.30970 2.38753 2.85375 3.37330 3.41729 3.42877 3.45595 3.77962 3.79281 4.23162 4.41106 4.42715 4.55106 4.67872 4.88999 5.00150 5.07825 5.11079 5.14427 5.24584 5.26332 5.28616 5.37289 5.44175 5.60699 5.62348 5.66877 5.79726 5.84996 5.88306 6.08039 6.18707 6.23599 6.34891 6.53189 6.57907 6.72756 6.80547 7.17324 7.25608 7.31105 7.53184 7.92242 7.94959 9.00913 9.67712 10.61645 11.37491 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.002828 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.050146 B = 9899.715662 C =10051.640984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.131 4.131 3 C -0.164 4.164 4 C 0.527 3.473 5 O -0.528 6.528 6 N -0.592 5.592 7 C 0.080 3.920 8 C -0.118 4.118 9 C -0.115 4.115 10 C 0.127 3.873 11 N -0.607 5.607 12 C -0.219 4.219 13 H 0.079 0.921 14 C -0.006 4.006 15 N -0.919 5.919 16 Si 0.911 3.089 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.167 3.833 21 C -0.094 4.094 22 C 0.115 3.885 23 C 0.476 3.524 24 F -0.172 7.172 25 F -0.182 7.182 26 F -0.172 7.172 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.030 0.970 38 H 0.037 0.963 39 H 0.254 0.746 40 H 0.070 0.930 41 H 0.023 0.977 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.090 0.910 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.331 6.977 -19.172 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.135 4.135 3 C -0.221 4.221 4 C 0.312 3.688 5 O -0.404 6.404 6 N -0.324 5.324 7 C -0.042 4.042 8 C -0.157 4.157 9 C -0.116 4.116 10 C 0.000 4.000 11 N -0.332 5.332 12 C -0.346 4.346 13 H 0.097 0.903 14 C -0.203 4.203 15 N -0.566 5.566 16 Si 0.741 3.259 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.041 3.959 21 C -0.132 4.132 22 C -0.007 4.007 23 C 0.421 3.579 24 F -0.153 7.153 25 F -0.163 7.163 26 F -0.153 7.153 27 H 0.119 0.881 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.108 0.892 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.645 6.277 -18.885 20.686 hybrid contribution -0.089 -0.161 0.902 0.921 sum 5.557 6.115 -17.982 19.790 Atomic orbital electron populations 1.22348 0.89094 1.05339 1.05469 1.22046 1.00860 0.98974 0.91669 1.22309 1.03230 0.91073 1.05444 1.19635 0.81048 0.84060 0.84033 1.90784 1.35746 1.27900 1.85982 1.47893 1.52612 1.26369 1.05495 1.22586 0.93221 0.86458 1.01924 1.21807 0.95957 1.01132 0.96794 1.22089 1.00709 0.96193 0.92636 1.22397 0.95645 0.93860 0.88054 1.45544 1.25693 1.56956 1.05053 1.18867 1.07053 1.26311 0.82396 0.90307 1.24769 0.96992 1.00431 0.98110 1.69810 1.13451 1.38512 1.34843 0.86218 0.77056 0.77897 0.84697 1.21231 1.21564 1.21057 1.22039 0.90404 1.00350 0.83135 1.21428 0.94669 0.96454 1.00621 1.21778 0.97691 0.96816 0.84390 1.19737 0.75964 0.77704 0.84447 1.93206 1.88316 1.37175 1.96648 1.93157 1.88593 1.80882 1.53691 1.93199 1.29178 1.96319 1.96647 0.88057 0.90000 0.90376 0.90513 0.89910 0.88358 0.87988 0.90609 0.91460 0.90408 0.95271 0.94528 0.93617 0.91152 0.95894 0.89183 0.92042 0.89202 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 7.88 37.16 0.29 -1.02 16 2 C -0.13 -1.30 0.32 -155.66 -0.05 -1.35 16 3 C -0.16 -1.17 7.89 37.15 0.29 -0.88 16 4 C 0.53 6.94 6.25 -10.99 -0.07 6.87 16 5 O -0.53 -8.93 14.25 5.56 0.08 -8.85 16 6 N -0.59 -7.22 2.93 -172.63 -0.51 -7.72 16 7 C 0.08 0.77 4.34 -3.64 -0.02 0.75 16 8 C -0.12 -1.40 4.95 -26.77 -0.13 -1.53 16 9 C -0.11 -1.87 0.84 -155.02 -0.13 -2.00 16 10 C 0.13 2.36 7.63 -8.21 -0.06 2.29 16 11 N -0.61 -14.71 3.55 -184.66 -0.66 -15.37 16 12 C -0.22 -5.95 10.74 -15.06 -0.16 -6.11 16 13 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 15 N -0.92 -26.64 11.51 55.49 0.64 -26.00 16 16 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.17 3.64 6.55 -8.21 -0.05 3.58 16 21 C -0.09 -1.51 5.27 -26.78 -0.14 -1.65 16 22 C 0.11 1.60 6.32 -3.65 -0.02 1.58 16 23 C 0.48 5.62 1.96 37.16 0.07 5.69 16 24 F -0.17 -2.36 16.04 2.25 0.04 -2.32 16 25 F -0.18 -1.87 16.11 2.25 0.04 -1.84 16 26 F -0.17 -2.30 15.90 2.25 0.04 -2.27 16 27 H 0.10 0.69 4.00 -51.93 -0.21 0.48 16 28 H 0.08 0.51 7.67 -51.92 -0.40 0.11 16 29 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 30 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 31 H 0.08 0.47 7.67 -51.93 -0.40 0.07 16 32 H 0.10 0.55 4.81 -51.93 -0.25 0.30 16 33 H 0.10 0.71 2.22 -51.93 -0.12 0.60 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 36 H 0.08 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.03 0.52 8.06 -51.93 -0.42 0.11 16 38 H 0.04 0.66 7.53 -51.93 -0.39 0.27 16 39 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.07 1.75 7.11 -51.93 -0.37 1.38 16 41 H 0.02 0.52 8.09 -51.93 -0.42 0.09 16 42 H 0.09 1.71 7.95 -51.93 -0.41 1.30 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.09 1.34 7.00 -51.93 -0.36 0.97 16 45 H 0.07 0.96 7.60 -51.93 -0.39 0.56 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -32.18 351.34 -6.51 -38.69 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.17 Total: -2.29 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.28 Total: 5.94 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.52 Total: -49.09 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.08 Total: -8.85 kcal Atomic # 9 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.43 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.18 -6.51 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035840647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.330 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds