Wall clock time and date at job start Tue Mar 31 2020 17:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.46985 * 2 1 4 4 C 1.50701 * 109.47014 * 120.00046 * 2 1 3 5 5 O 1.21279 * 119.99763 * 122.84983 * 4 2 1 6 6 N 1.34776 * 120.00045 * 302.85754 * 4 2 1 7 7 C 1.46895 * 120.46094 * 354.69331 * 6 4 2 8 8 C 1.53359 * 108.74097 * 124.34976 * 7 6 4 9 9 C 1.52560 * 109.12546 * 52.26042 * 8 7 6 10 10 C 1.52956 * 114.06507 * 75.54454 * 9 8 7 11 11 N 1.47161 * 87.85466 * 139.43831 * 10 9 8 12 12 C 1.36934 * 136.00030 * 153.33900 * 11 10 9 13 13 H 1.08003 * 119.99994 * 359.97438 * 12 11 10 14 14 C 1.38819 * 120.00106 * 180.02562 * 12 11 10 15 15 N 1.31615 * 119.99571 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47096 * 59.99757 * 16 14 12 18 18 H 1.48493 * 109.47231 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47232 * 300.00302 * 16 14 12 20 20 C 1.47168 * 87.99976 * 333.33927 * 11 10 9 21 21 C 1.52557 * 113.43067 * 302.67128 * 9 8 7 22 22 C 1.46885 * 120.46528 * 174.68074 * 6 4 2 23 23 C 1.53001 * 109.47050 * 240.00034 * 2 1 3 24 24 F 1.39903 * 109.47244 * 300.00022 * 23 2 1 25 25 F 1.39896 * 109.47190 * 59.99798 * 23 2 1 26 26 F 1.39898 * 109.47049 * 180.02562 * 23 2 1 27 27 H 1.08999 * 109.47138 * 304.81160 * 1 2 3 28 28 H 1.09010 * 109.47222 * 64.80981 * 1 2 3 29 29 H 1.09006 * 109.47210 * 184.80649 * 1 2 3 30 30 H 1.09003 * 109.46986 * 175.23360 * 3 2 1 31 31 H 1.09002 * 109.47475 * 295.23672 * 3 2 1 32 32 H 1.09004 * 109.47057 * 55.24046 * 3 2 1 33 33 H 1.09000 * 109.59539 * 4.57193 * 7 6 4 34 34 H 1.08997 * 109.59263 * 244.12606 * 7 6 4 35 35 H 1.09000 * 109.52672 * 292.36579 * 8 7 6 36 36 H 1.08994 * 109.52902 * 172.15705 * 8 7 6 37 37 H 1.09000 * 113.48554 * 24.68845 * 10 9 8 38 38 H 1.08998 * 113.49119 * 254.18877 * 10 9 8 39 39 H 0.97005 * 119.99852 * 179.97438 * 15 14 12 40 40 H 1.08999 * 113.49325 * 141.41479 * 20 11 10 41 41 H 1.08998 * 113.48377 * 271.92192 * 20 11 10 42 42 H 1.09003 * 109.52488 * 177.21977 * 21 9 8 43 43 H 1.09006 * 109.52757 * 297.42394 * 21 9 8 44 44 H 1.09001 * 109.58992 * 355.42196 * 22 6 4 45 45 H 1.08999 * 109.59155 * 115.85825 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7716 -1.6655 1.1199 6 7 1.6599 -0.2845 2.4537 7 6 0.8605 0.9385 2.6050 8 6 -0.4140 0.6004 3.3881 9 6 -0.0320 -0.1200 4.6776 10 6 0.5395 0.7982 5.7592 11 7 -0.2423 0.0332 6.7437 12 6 -0.1360 -0.2520 8.0788 13 1 0.6965 0.1334 8.6488 14 6 -1.0978 -1.0374 8.6995 15 7 -2.1115 -1.5083 8.0045 16 14 -0.9525 -1.4270 10.5206 17 1 -0.9642 -0.1629 11.2997 18 1 -2.0966 -2.2768 10.9378 19 1 0.3192 -2.1516 10.7719 20 6 -1.1883 -0.2909 5.6640 21 6 0.7818 -1.3893 4.4451 22 6 2.0475 -1.0370 3.6542 23 6 2.0400 -0.7212 -1.2493 24 9 1.5737 -2.0403 -1.2493 25 9 1.5736 -0.0618 -2.3915 26 9 3.4390 -0.7218 -1.2490 27 1 -0.3633 0.5867 0.8437 28 1 -0.3634 0.4374 -0.9300 29 1 -0.3634 -1.0241 0.0861 30 1 3.1266 1.4436 0.0854 31 1 1.7480 1.9311 -0.9296 32 1 1.6086 1.9803 0.8443 33 1 0.5934 1.3247 1.6213 34 1 1.4364 1.6866 3.1496 35 1 -1.0517 -0.0458 2.7849 36 1 -0.9484 1.5194 3.6287 37 1 0.2195 1.8356 5.6618 38 1 1.6172 0.6990 5.8884 39 1 -2.7834 -2.0575 8.4381 40 1 -1.5706 -1.3105 5.7128 41 1 -1.9775 0.4507 5.5408 42 1 1.0610 -1.8239 5.4050 43 1 0.1860 -2.1055 3.8792 44 1 2.5622 -1.9522 3.3616 45 1 2.7061 -0.4262 4.2716 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035840647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:52 Heat of formation + Delta-G solvation = -131.759421 kcal Electronic energy + Delta-G solvation = -31266.363993 eV Core-core repulsion = 26677.765912 eV Total energy + Delta-G solvation = -4588.598081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.15222 -48.62804 -48.59297 -42.03929 -40.46078 -37.41605 -36.55347 -34.38316 -32.17161 -31.96858 -28.81771 -28.51142 -27.33043 -26.59155 -25.60090 -24.58118 -23.55237 -22.45313 -21.16288 -19.59627 -19.37619 -18.88572 -18.62998 -18.33205 -17.58673 -16.87350 -16.62009 -16.42318 -16.11163 -15.69781 -15.60532 -15.52524 -15.38387 -15.01177 -14.95179 -14.78697 -14.75197 -14.70095 -14.54229 -14.09166 -13.91093 -13.57692 -13.47079 -13.27015 -13.14985 -13.02101 -12.86663 -12.76913 -12.57374 -12.46116 -12.26958 -12.11269 -11.97274 -11.63115 -11.56739 -11.21427 -10.89289 -10.78005 -10.69824 -9.67352 -8.85690 -7.88376 -5.19665 1.34774 1.45186 1.47631 1.47858 1.53721 1.91705 2.48692 2.59987 2.91771 2.96990 3.33563 3.44359 3.48504 3.60581 3.65206 3.78197 3.91190 3.96162 4.14044 4.24132 4.42096 4.46120 4.55273 4.60265 4.64283 4.66562 4.69663 4.77865 4.80996 4.89858 4.94407 5.04313 5.11190 5.16114 5.17284 5.24556 5.31307 5.38873 5.47390 5.60093 5.79141 5.98678 6.27144 6.91994 6.94415 7.64170 8.66259 9.28841 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.030327 B = 0.002828 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.050146 B = 9899.715662 C =10051.640984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.123 4.123 3 C -0.163 4.163 4 C 0.522 3.478 5 O -0.573 6.573 6 N -0.589 5.589 7 C 0.080 3.920 8 C -0.114 4.114 9 C -0.086 4.086 10 C 0.130 3.870 11 N -0.641 5.641 12 C -0.225 4.225 13 H 0.082 0.918 14 C -0.067 4.067 15 N -0.952 5.952 16 Si 0.973 3.027 17 H -0.277 1.277 18 H -0.297 1.297 19 H -0.278 1.278 20 C 0.161 3.839 21 C -0.087 4.087 22 C 0.126 3.874 23 C 0.469 3.531 24 F -0.189 7.189 25 F -0.171 7.171 26 F -0.185 7.185 27 H 0.118 0.882 28 H 0.105 0.895 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.246 0.754 40 H 0.028 0.972 41 H 0.020 0.980 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 9.748 -20.622 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.128 4.128 3 C -0.220 4.220 4 C 0.310 3.690 5 O -0.452 6.452 6 N -0.320 5.320 7 C -0.040 4.040 8 C -0.152 4.152 9 C -0.087 4.087 10 C 0.005 3.995 11 N -0.366 5.366 12 C -0.353 4.353 13 H 0.100 0.900 14 C -0.260 4.260 15 N -0.601 5.601 16 Si 0.802 3.198 17 H -0.203 1.203 18 H -0.223 1.223 19 H -0.204 1.204 20 C 0.035 3.965 21 C -0.125 4.125 22 C 0.003 3.997 23 C 0.414 3.586 24 F -0.170 7.170 25 F -0.153 7.153 26 F -0.166 7.166 27 H 0.136 0.864 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.138 0.862 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.996 9.100 -20.356 23.089 hybrid contribution -0.164 -1.034 1.308 1.676 sum 5.832 8.066 -19.047 21.491 Atomic orbital electron populations 1.22436 0.87238 1.05046 1.07477 1.22101 1.02097 0.99875 0.88711 1.22421 1.02938 0.88976 1.07616 1.20225 0.80275 0.83526 0.85011 1.90767 1.37805 1.29961 1.86676 1.47917 1.52595 1.26828 1.04629 1.22861 0.91826 0.85505 1.03818 1.21816 0.97520 1.01556 0.94322 1.21824 0.97024 0.95880 0.93968 1.22588 0.95588 0.94629 0.86714 1.45899 1.27460 1.58351 1.04932 1.19256 1.06643 1.25300 0.84133 0.90026 1.25549 0.97204 1.01169 1.02062 1.70005 1.14285 1.39723 1.36103 0.85225 0.76709 0.77684 0.80180 1.20340 1.22283 1.20447 1.22049 0.91822 0.97761 0.84860 1.21285 0.95808 0.96357 0.99087 1.21497 0.96175 0.96965 0.85016 1.20108 0.75459 0.77357 0.85665 1.93174 1.88425 1.38615 1.96791 1.93173 1.88351 1.80462 1.53271 1.93172 1.30354 1.96342 1.96775 0.86400 0.87625 0.91872 0.91241 0.87685 0.86166 0.84498 0.88685 0.90629 0.88349 0.92980 0.93755 0.94510 0.95350 0.96253 0.92843 0.92703 0.90540 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 7.88 71.98 0.57 -1.44 16 2 C -0.12 -2.10 0.32 -52.93 -0.02 -2.11 16 3 C -0.16 -1.61 7.89 71.98 0.57 -1.04 16 4 C 0.52 12.82 6.25 87.66 0.55 13.37 16 5 O -0.57 -19.29 14.25 -3.03 -0.04 -19.33 16 6 N -0.59 -12.90 2.93 -818.46 -2.40 -15.30 16 7 C 0.08 1.18 4.34 86.42 0.38 1.55 16 8 C -0.11 -2.27 4.95 30.57 0.15 -2.12 16 9 C -0.09 -2.69 0.84 -52.51 -0.04 -2.74 16 10 C 0.13 4.58 7.63 83.32 0.64 5.21 16 11 N -0.64 -31.27 3.55 -738.15 -2.62 -33.89 16 12 C -0.22 -12.38 10.74 84.04 0.90 -11.48 16 13 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 14 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 15 N -0.95 -57.19 11.51 21.65 0.25 -56.94 16 16 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 C 0.16 7.13 6.55 83.31 0.55 7.68 16 21 C -0.09 -2.84 5.27 30.56 0.16 -2.68 16 22 C 0.13 3.41 6.32 86.42 0.55 3.96 16 23 C 0.47 10.28 1.96 71.98 0.14 10.42 16 24 F -0.19 -5.08 16.04 44.97 0.72 -4.36 16 25 F -0.17 -3.09 16.11 44.97 0.72 -2.36 16 26 F -0.19 -4.79 15.90 44.97 0.72 -4.07 16 27 H 0.12 0.99 4.00 -2.39 -0.01 0.98 16 28 H 0.11 0.83 7.67 -2.38 -0.02 0.81 16 29 H 0.06 1.00 7.94 -2.38 -0.02 0.98 16 30 H 0.07 0.85 7.94 -2.39 -0.02 0.83 16 31 H 0.10 0.64 7.67 -2.39 -0.02 0.62 16 32 H 0.12 0.63 4.81 -2.39 -0.01 0.62 16 33 H 0.14 1.11 2.22 -2.39 -0.01 1.10 16 34 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.46 7.64 -2.39 -0.02 1.44 16 36 H 0.10 1.69 8.09 -2.39 -0.02 1.67 16 37 H 0.05 1.66 8.06 -2.39 -0.02 1.64 16 38 H 0.04 1.50 7.53 -2.39 -0.02 1.48 16 39 H 0.25 14.50 8.31 -92.70 -0.77 13.73 16 40 H 0.03 1.48 7.11 -2.39 -0.02 1.46 16 41 H 0.02 0.87 8.09 -2.39 -0.02 0.85 16 42 H 0.05 2.13 7.95 -2.39 -0.02 2.11 16 43 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.08 2.31 7.00 -2.39 -0.02 2.30 16 45 H 0.08 2.04 7.60 -2.39 -0.02 2.02 16 Total: -1.00 -74.46 351.34 5.94 -68.52 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.02 Total: 4.84 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 5.55 Total: 15.27 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -4.77 Total: -106.13 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.04 Total: -19.33 kcal Atomic # 9 Polarization: -12.96 SS G_CDS: 2.16 Total: -10.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -74.46 5.94 -68.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035840647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.243 kcal (2) G-P(sol) polarization free energy of solvation -74.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds