Wall clock time and date at job start Tue Mar 31 2020 17:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.50700 * 109.47288 * 120.00475 * 2 1 3 5 5 O 1.21283 * 119.99889 * 116.31676 * 4 2 1 6 6 N 1.34775 * 119.99651 * 296.59863 * 4 2 1 7 7 C 1.47214 * 121.36356 * 4.93700 * 6 4 2 8 8 C 1.52756 * 107.75747 * 238.09346 * 7 6 4 9 9 C 1.53152 * 110.84548 * 302.11596 * 8 7 6 10 10 H 1.09004 * 111.79617 * 289.68296 * 9 8 7 11 11 C 1.53939 * 110.88378 * 55.27077 * 9 8 7 12 12 H 1.08992 * 109.50863 * 188.81391 * 11 9 8 13 13 C 1.54194 * 102.20761 * 72.76773 * 11 9 8 14 14 C 1.54720 * 102.06821 * 37.57212 * 13 11 9 15 15 N 1.47213 * 107.23892 * 338.47385 * 14 13 11 16 16 C 1.36942 * 125.88907 * 176.28701 * 15 14 13 17 17 H 1.07995 * 119.99917 * 185.12045 * 16 15 14 18 18 C 1.38805 * 119.99785 * 5.11923 * 16 15 14 19 19 N 1.31622 * 120.00363 * 5.16939 * 18 16 15 20 20 Si 1.86807 * 119.99918 * 185.16486 * 18 16 15 21 21 H 1.48504 * 109.46714 * 95.00041 * 20 18 16 22 22 H 1.48497 * 109.47357 * 215.00218 * 20 18 16 23 23 H 1.48498 * 109.46796 * 335.00186 * 20 18 16 24 24 C 1.46714 * 121.35674 * 184.65995 * 6 4 2 25 25 C 1.53002 * 109.46505 * 240.00098 * 2 1 3 26 26 F 1.39891 * 109.47555 * 300.00145 * 25 2 1 27 27 F 1.39903 * 109.47034 * 60.00356 * 25 2 1 28 28 F 1.39901 * 109.46673 * 179.97438 * 25 2 1 29 29 H 1.09007 * 109.46562 * 304.71733 * 1 2 3 30 30 H 1.08995 * 109.47527 * 64.71230 * 1 2 3 31 31 H 1.09003 * 109.47239 * 184.72276 * 1 2 3 32 32 H 1.08998 * 109.47080 * 175.10846 * 3 2 1 33 33 H 1.08998 * 109.47196 * 295.11015 * 3 2 1 34 34 H 1.08997 * 109.46678 * 55.10415 * 3 2 1 35 35 H 1.09003 * 109.80333 * 357.65378 * 7 6 4 36 36 H 1.08996 * 109.80281 * 118.46653 * 7 6 4 37 37 H 1.09001 * 109.20620 * 62.47277 * 8 7 6 38 38 H 1.08999 * 109.20060 * 181.80861 * 8 7 6 39 39 H 1.09007 * 110.91064 * 155.76177 * 13 11 9 40 40 H 1.09003 * 110.91505 * 279.37531 * 13 11 9 41 41 H 1.08997 * 109.89205 * 97.88464 * 14 13 11 42 42 H 1.09002 * 109.89060 * 219.06947 * 14 13 11 43 43 H 0.97002 * 120.00418 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.13926 * 248.21730 * 24 6 4 45 45 H 1.09001 * 109.14680 * 7.36171 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6736 -1.7341 1.1202 6 7 1.7643 -0.2115 2.4533 7 6 0.8949 0.9636 2.6276 8 6 1.7015 2.0358 3.3577 9 6 2.2100 1.5128 4.7043 10 1 1.3991 1.3858 5.4216 11 6 3.0200 0.2168 4.5192 12 1 3.2368 -0.2193 5.4942 13 6 4.3261 0.7364 3.8855 14 6 4.5392 2.0736 4.6340 15 7 3.2315 2.4878 5.1682 16 6 2.9965 3.5827 5.9563 17 1 2.0113 3.7527 6.3646 18 6 4.0247 4.4741 6.2303 19 7 5.1974 4.3240 5.6519 20 14 3.7439 5.8868 7.4199 21 1 4.2026 5.4908 8.7756 22 1 4.5091 7.0757 6.9660 23 1 2.2967 6.2167 7.4637 24 6 2.3223 -0.8208 3.6657 25 6 2.0399 -0.7213 -1.2493 26 9 1.5736 -2.0402 -1.2494 27 9 1.5736 -0.0617 -2.3916 28 9 3.4389 -0.7208 -1.2497 29 1 -0.3633 0.5853 0.8448 30 1 -0.3634 0.4389 -0.9291 31 1 -0.3634 -1.0242 0.0846 32 1 3.1265 1.4437 0.0876 33 1 1.7501 1.9304 -0.9305 34 1 1.6069 1.9809 0.8429 35 1 0.5800 1.3378 1.6534 36 1 0.0205 0.6915 3.2187 37 1 2.5524 2.3262 2.7414 38 1 1.0686 2.9067 3.5280 39 1 5.1507 0.0489 4.0747 40 1 4.1996 0.9049 2.8160 41 1 5.2459 1.9324 5.4517 42 1 4.9139 2.8294 3.9436 43 1 5.9159 4.9471 5.8431 44 1 1.5160 -1.2774 4.2398 45 1 3.0384 -1.5919 3.3812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036873996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:22 Heat of formation + Delta-G solvation = -141.681648 kcal Electronic energy + Delta-G solvation = -31898.117519 eV Core-core repulsion = 27309.089178 eV Total energy + Delta-G solvation = -4589.028341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.15850 -47.66031 -47.53805 -40.84729 -38.47071 -36.07949 -35.05134 -32.53345 -31.48951 -29.52047 -28.36728 -27.83898 -26.43563 -25.38775 -24.02395 -22.76348 -22.22233 -20.33717 -19.99696 -18.62309 -18.37316 -18.15714 -17.41886 -16.90027 -16.68807 -15.60512 -15.45175 -14.90439 -14.72846 -14.60692 -14.35921 -14.20112 -14.00145 -13.94675 -13.76887 -13.74226 -13.67291 -13.47300 -13.08745 -12.73690 -12.63596 -12.54523 -12.34556 -12.02661 -11.81987 -11.71111 -11.63542 -11.42439 -11.19213 -11.02659 -10.82365 -10.70722 -10.12905 -10.01778 -9.91698 -9.83090 -9.64145 -9.56052 -8.67789 -8.57181 -6.89395 -5.75541 -3.09901 2.37827 2.47646 2.92556 3.35998 3.41137 3.43616 3.54095 3.86959 3.88468 4.33185 4.43278 4.50149 4.64763 4.81979 4.97135 5.12370 5.19585 5.23370 5.26779 5.35118 5.37415 5.40385 5.46307 5.54645 5.67338 5.75040 5.82224 5.84043 5.92020 6.01978 6.17885 6.19565 6.30448 6.44773 6.53711 6.65446 6.81297 6.99303 7.33834 7.48802 7.61394 7.77993 7.99353 8.19285 9.15835 9.76273 10.43941 11.35654 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003405 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.696665 B = 8220.924150 C = 8376.752684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.129 4.129 3 C -0.166 4.166 4 C 0.532 3.468 5 O -0.529 6.529 6 N -0.591 5.591 7 C 0.079 3.921 8 C -0.147 4.147 9 C 0.166 3.834 10 H 0.061 0.939 11 C -0.114 4.114 12 H 0.081 0.919 13 C -0.135 4.135 14 C 0.178 3.822 15 N -0.600 5.600 16 C -0.229 4.229 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.909 3.091 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.127 3.873 25 C 0.476 3.524 26 F -0.173 7.173 27 F -0.182 7.182 28 F -0.172 7.172 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.037 0.963 42 H 0.047 0.953 43 H 0.252 0.748 44 H 0.065 0.935 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.655 -8.458 -11.564 17.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.134 4.134 3 C -0.223 4.223 4 C 0.317 3.683 5 O -0.406 6.406 6 N -0.323 5.323 7 C -0.044 4.044 8 C -0.187 4.187 9 C 0.059 3.941 10 H 0.079 0.921 11 C -0.134 4.134 12 H 0.100 0.900 13 C -0.173 4.173 14 C 0.054 3.946 15 N -0.324 5.324 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.740 3.260 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.005 3.995 25 C 0.421 3.579 26 F -0.154 7.154 27 F -0.163 7.163 28 F -0.153 7.153 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.131 -8.814 -11.531 17.701 hybrid contribution 0.096 0.798 0.450 0.921 sum -10.036 -8.017 -11.082 16.964 Atomic orbital electron populations 1.22269 0.89355 1.04800 1.05403 1.22031 1.00634 0.99188 0.91544 1.22352 1.03643 0.90774 1.05522 1.19548 0.80238 0.84625 0.83860 1.90776 1.40285 1.23529 1.85965 1.47851 1.48368 1.30787 1.05275 1.22597 0.93422 0.86305 1.02039 1.22606 1.00037 0.97066 0.99030 1.21153 0.92021 0.88373 0.92576 0.92110 1.21975 0.96964 0.95610 0.98820 0.90048 1.22747 0.95766 0.99479 0.99345 1.21192 0.87585 0.90109 0.95763 1.44929 1.02088 1.26753 1.58618 1.19033 0.96113 0.98742 1.21847 0.90527 1.24789 0.96182 0.98885 1.00411 1.69968 1.02816 1.38442 1.45376 0.86149 0.77259 0.81844 0.80778 1.21716 1.21796 1.20661 1.21159 0.98150 0.95902 0.84287 1.19747 0.76041 0.77587 0.84489 1.93190 1.88317 1.37249 1.96660 1.93157 1.88600 1.80888 1.53687 1.93209 1.29131 1.96305 1.96646 0.88489 0.89950 0.90619 0.90341 0.90076 0.87960 0.88359 0.90853 0.91069 0.91052 0.92390 0.92682 0.94484 0.93439 0.93773 0.91646 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 7.92 37.16 0.29 -1.03 16 2 C -0.13 -1.46 0.32 -155.66 -0.05 -1.51 16 3 C -0.17 -1.71 7.88 37.16 0.29 -1.41 16 4 C 0.53 7.50 6.26 -10.99 -0.07 7.43 16 5 O -0.53 -9.28 14.33 5.56 0.08 -9.20 16 6 N -0.59 -7.68 2.78 -174.05 -0.48 -8.16 16 7 C 0.08 0.87 4.55 -3.78 -0.02 0.85 16 8 C -0.15 -2.21 4.78 -26.78 -0.13 -2.33 16 9 C 0.17 2.96 3.62 -66.19 -0.24 2.72 16 10 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.11 -1.83 2.89 -90.32 -0.26 -2.09 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.14 -2.48 5.89 -25.20 -0.15 -2.63 16 14 C 0.18 4.14 5.09 -2.75 -0.01 4.12 16 15 N -0.60 -14.00 2.88 -161.78 -0.47 -14.46 16 16 C -0.23 -5.98 10.30 -15.06 -0.16 -6.13 16 17 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.16 5.47 -17.43 -0.10 -0.26 16 19 N -0.92 -26.25 10.45 55.49 0.58 -25.67 16 20 Si 0.91 21.38 29.56 -169.99 -5.02 16.35 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 C 0.13 1.75 5.87 -4.74 -0.03 1.72 16 25 C 0.48 6.14 1.95 37.16 0.07 6.22 16 26 F -0.17 -2.43 15.88 2.25 0.04 -2.39 16 27 F -0.18 -2.08 16.11 2.25 0.04 -2.05 16 28 F -0.17 -2.57 16.06 2.25 0.04 -2.53 16 29 H 0.10 0.65 4.88 -51.92 -0.25 0.40 16 30 H 0.08 0.55 7.67 -51.93 -0.40 0.16 16 31 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 32 H 0.08 0.93 7.94 -51.93 -0.41 0.52 16 33 H 0.08 0.69 7.67 -51.93 -0.40 0.29 16 34 H 0.10 1.00 3.92 -51.93 -0.20 0.79 16 35 H 0.10 0.87 2.35 -51.93 -0.12 0.75 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.05 1.01 7.41 -51.93 -0.38 0.62 16 41 H 0.04 0.97 7.68 -51.93 -0.40 0.57 16 42 H 0.05 1.24 7.29 -51.93 -0.38 0.86 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 1.31 7.07 -51.93 -0.37 0.94 16 LS Contribution 345.42 15.07 5.21 5.21 Total: -1.00 -30.89 345.42 -6.69 -37.58 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.15 Total: -0.35 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.55 Total: 5.67 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.37 Total: -48.29 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 9 Polarization: -7.08 SS G_CDS: 0.11 Total: -6.97 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.89 -6.69 -37.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036873996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.097 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds