Wall clock time and date at job start Tue Mar 31 2020 17:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47224 * 2 1 4 4 C 1.50700 * 109.47288 * 120.00475 * 2 1 3 5 5 O 1.21283 * 119.99889 * 116.31676 * 4 2 1 6 6 N 1.34775 * 119.99651 * 296.59863 * 4 2 1 7 7 C 1.47214 * 121.36356 * 4.93700 * 6 4 2 8 8 C 1.52756 * 107.75747 * 238.09346 * 7 6 4 9 9 C 1.53152 * 110.84548 * 302.11596 * 8 7 6 10 10 H 1.09004 * 111.79617 * 289.68296 * 9 8 7 11 11 C 1.53939 * 110.88378 * 55.27077 * 9 8 7 12 12 H 1.08992 * 109.50863 * 188.81391 * 11 9 8 13 13 C 1.54194 * 102.20761 * 72.76773 * 11 9 8 14 14 C 1.54720 * 102.06821 * 37.57212 * 13 11 9 15 15 N 1.47213 * 107.23892 * 338.47385 * 14 13 11 16 16 C 1.36942 * 125.88907 * 176.28701 * 15 14 13 17 17 H 1.07995 * 119.99917 * 185.12045 * 16 15 14 18 18 C 1.38805 * 119.99785 * 5.11923 * 16 15 14 19 19 N 1.31622 * 120.00363 * 5.16939 * 18 16 15 20 20 Si 1.86807 * 119.99918 * 185.16486 * 18 16 15 21 21 H 1.48504 * 109.46714 * 95.00041 * 20 18 16 22 22 H 1.48497 * 109.47357 * 215.00218 * 20 18 16 23 23 H 1.48498 * 109.46796 * 335.00186 * 20 18 16 24 24 C 1.46714 * 121.35674 * 184.65995 * 6 4 2 25 25 C 1.53002 * 109.46505 * 240.00098 * 2 1 3 26 26 F 1.39891 * 109.47555 * 300.00145 * 25 2 1 27 27 F 1.39903 * 109.47034 * 60.00356 * 25 2 1 28 28 F 1.39901 * 109.46673 * 179.97438 * 25 2 1 29 29 H 1.09007 * 109.46562 * 304.71733 * 1 2 3 30 30 H 1.08995 * 109.47527 * 64.71230 * 1 2 3 31 31 H 1.09003 * 109.47239 * 184.72276 * 1 2 3 32 32 H 1.08998 * 109.47080 * 175.10846 * 3 2 1 33 33 H 1.08998 * 109.47196 * 295.11015 * 3 2 1 34 34 H 1.08997 * 109.46678 * 55.10415 * 3 2 1 35 35 H 1.09003 * 109.80333 * 357.65378 * 7 6 4 36 36 H 1.08996 * 109.80281 * 118.46653 * 7 6 4 37 37 H 1.09001 * 109.20620 * 62.47277 * 8 7 6 38 38 H 1.08999 * 109.20060 * 181.80861 * 8 7 6 39 39 H 1.09007 * 110.91064 * 155.76177 * 13 11 9 40 40 H 1.09003 * 110.91505 * 279.37531 * 13 11 9 41 41 H 1.08997 * 109.89205 * 97.88464 * 14 13 11 42 42 H 1.09002 * 109.89060 * 219.06947 * 14 13 11 43 43 H 0.97002 * 120.00418 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.13926 * 248.21730 * 24 6 4 45 45 H 1.09001 * 109.14680 * 7.36171 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6736 -1.7341 1.1202 6 7 1.7643 -0.2115 2.4533 7 6 0.8949 0.9636 2.6276 8 6 1.7015 2.0358 3.3577 9 6 2.2100 1.5128 4.7043 10 1 1.3991 1.3858 5.4216 11 6 3.0200 0.2168 4.5192 12 1 3.2368 -0.2193 5.4942 13 6 4.3261 0.7364 3.8855 14 6 4.5392 2.0736 4.6340 15 7 3.2315 2.4878 5.1682 16 6 2.9965 3.5827 5.9563 17 1 2.0113 3.7527 6.3646 18 6 4.0247 4.4741 6.2303 19 7 5.1974 4.3240 5.6519 20 14 3.7439 5.8868 7.4199 21 1 4.2026 5.4908 8.7756 22 1 4.5091 7.0757 6.9660 23 1 2.2967 6.2167 7.4637 24 6 2.3223 -0.8208 3.6657 25 6 2.0399 -0.7213 -1.2493 26 9 1.5736 -2.0402 -1.2494 27 9 1.5736 -0.0617 -2.3916 28 9 3.4389 -0.7208 -1.2497 29 1 -0.3633 0.5853 0.8448 30 1 -0.3634 0.4389 -0.9291 31 1 -0.3634 -1.0242 0.0846 32 1 3.1265 1.4437 0.0876 33 1 1.7501 1.9304 -0.9305 34 1 1.6069 1.9809 0.8429 35 1 0.5800 1.3378 1.6534 36 1 0.0205 0.6915 3.2187 37 1 2.5524 2.3262 2.7414 38 1 1.0686 2.9067 3.5280 39 1 5.1507 0.0489 4.0747 40 1 4.1996 0.9049 2.8160 41 1 5.2459 1.9324 5.4517 42 1 4.9139 2.8294 3.9436 43 1 5.9159 4.9471 5.8431 44 1 1.5160 -1.2774 4.2398 45 1 3.0384 -1.5919 3.3812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036873996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:21 Heat of formation + Delta-G solvation = -159.705183 kcal Electronic energy + Delta-G solvation = -31898.899078 eV Core-core repulsion = 27309.089178 eV Total energy + Delta-G solvation = -4589.809900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.16882 -48.64541 -48.60550 -41.96331 -39.86531 -37.18016 -36.31354 -34.27935 -32.80382 -31.14321 -29.91716 -28.55227 -27.43629 -26.78886 -25.64135 -23.98253 -23.31939 -21.90078 -21.30777 -19.74754 -19.40446 -19.34166 -18.73469 -18.42620 -17.77271 -16.77791 -16.60614 -16.53400 -16.11204 -15.68000 -15.56575 -15.47549 -15.16395 -15.02424 -14.92366 -14.79543 -14.71338 -14.50243 -14.32243 -14.15211 -13.83670 -13.53721 -13.41043 -13.31400 -13.20183 -13.00260 -12.86280 -12.69972 -12.66615 -12.51823 -12.40636 -11.99226 -11.87797 -11.59282 -11.48563 -11.28405 -11.14860 -10.79083 -10.66752 -9.70726 -8.83699 -7.80068 -5.14711 1.33893 1.48131 1.48479 1.49553 1.57968 1.92029 2.52288 2.58444 2.90753 2.95396 3.38693 3.41480 3.55465 3.62878 3.75091 3.82154 3.89162 4.05988 4.13276 4.28845 4.40289 4.46013 4.51469 4.55000 4.60753 4.62027 4.64792 4.77470 4.80482 4.84214 4.92502 4.99863 5.09302 5.12840 5.17172 5.34933 5.47503 5.52584 5.64004 5.69678 5.80936 6.22040 6.28509 6.92597 7.12985 7.81705 8.48981 9.30642 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.022364 B = 0.003405 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.696665 B = 8220.924150 C = 8376.752684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.123 4.123 3 C -0.164 4.164 4 C 0.527 3.473 5 O -0.568 6.568 6 N -0.589 5.589 7 C 0.086 3.914 8 C -0.137 4.137 9 C 0.160 3.840 10 H 0.075 0.925 11 C -0.100 4.100 12 H 0.080 0.920 13 C -0.122 4.122 14 C 0.191 3.809 15 N -0.618 5.618 16 C -0.227 4.227 17 H 0.089 0.911 18 C -0.069 4.069 19 N -0.955 5.955 20 Si 0.971 3.029 21 H -0.294 1.294 22 H -0.301 1.301 23 H -0.262 1.262 24 C 0.133 3.867 25 C 0.470 3.530 26 F -0.181 7.181 27 F -0.172 7.172 28 F -0.189 7.189 29 H 0.117 0.883 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.106 0.894 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.055 0.945 41 H -0.004 1.004 42 H 0.007 0.993 43 H 0.242 0.758 44 H 0.097 0.903 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 -8.789 -11.973 20.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.128 4.128 3 C -0.221 4.221 4 C 0.314 3.686 5 O -0.448 6.448 6 N -0.320 5.320 7 C -0.035 4.035 8 C -0.177 4.177 9 C 0.054 3.946 10 H 0.093 0.907 11 C -0.120 4.120 12 H 0.099 0.901 13 C -0.160 4.160 14 C 0.066 3.934 15 N -0.343 5.343 16 C -0.356 4.356 17 H 0.106 0.894 18 C -0.262 4.262 19 N -0.605 5.605 20 Si 0.801 3.199 21 H -0.222 1.222 22 H -0.228 1.228 23 H -0.187 1.187 24 C 0.011 3.989 25 C 0.415 3.585 26 F -0.163 7.163 27 F -0.154 7.154 28 F -0.171 7.171 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.014 0.986 42 H 0.025 0.975 43 H 0.052 0.948 44 H 0.115 0.885 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.678 -9.157 -11.947 20.338 hybrid contribution 1.186 0.870 0.559 1.574 sum -12.492 -8.287 -11.387 18.825 Atomic orbital electron populations 1.22371 0.86381 1.05457 1.07389 1.22074 1.02822 0.98698 0.89176 1.22378 1.02281 0.90369 1.07071 1.20026 0.79498 0.84269 0.84766 1.90761 1.41988 1.25455 1.86577 1.47913 1.48250 1.31049 1.04825 1.22736 0.93030 0.84193 1.03569 1.22365 0.99689 0.98428 0.97214 1.21480 0.91328 0.87605 0.94164 0.90711 1.21880 0.95357 0.95607 0.99166 0.90133 1.22559 0.97723 0.96939 0.98762 1.20829 0.87254 0.91506 0.93832 1.45190 1.03487 1.27112 1.58475 1.19472 0.96254 0.98924 1.20964 0.89365 1.25579 0.96229 1.01765 1.02588 1.70198 1.03617 1.39344 1.47318 0.85153 0.77834 0.78647 0.78297 1.22150 1.22837 1.18652 1.21063 0.98845 0.94553 0.84453 1.20064 0.75318 0.77531 0.85563 1.93170 1.88290 1.38049 1.96762 1.93172 1.88333 1.80557 1.53303 1.93175 1.30738 1.96372 1.96787 0.86473 0.87970 0.90672 0.92594 0.87847 0.87165 0.85658 0.87562 0.93624 0.90847 0.91759 0.92615 0.98568 0.97457 0.94837 0.88511 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 7.92 71.98 0.57 -1.36 16 2 C -0.12 -2.47 0.32 -52.92 -0.02 -2.49 16 3 C -0.16 -2.99 7.88 71.98 0.57 -2.42 16 4 C 0.53 13.80 6.26 87.66 0.55 14.35 16 5 O -0.57 -19.42 14.33 -3.04 -0.04 -19.47 16 6 N -0.59 -13.57 2.78 -822.97 -2.29 -15.86 16 7 C 0.09 1.53 4.55 86.16 0.39 1.92 16 8 C -0.14 -3.77 4.78 30.56 0.15 -3.63 16 9 C 0.16 5.39 3.62 44.95 0.16 5.56 16 10 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 11 C -0.10 -3.08 2.89 -10.60 -0.03 -3.11 16 12 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 13 C -0.12 -4.52 5.89 31.58 0.19 -4.34 16 14 C 0.19 9.30 5.09 86.83 0.44 9.74 16 15 N -0.62 -29.05 2.88 -665.75 -1.92 -30.96 16 16 C -0.23 -11.84 10.30 84.03 0.87 -10.98 16 17 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.07 -3.80 5.47 84.86 0.46 -3.34 16 19 N -0.96 -57.07 10.45 21.65 0.23 -56.84 16 20 Si 0.97 44.51 29.56 68.60 2.03 46.54 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 C 0.13 3.30 5.87 85.81 0.50 3.80 16 25 C 0.47 11.43 1.95 71.98 0.14 11.57 16 26 F -0.18 -4.88 15.88 44.97 0.71 -4.17 16 27 F -0.17 -3.57 16.11 44.97 0.72 -2.85 16 28 F -0.19 -5.63 16.06 44.97 0.72 -4.91 16 29 H 0.12 0.92 4.88 -2.38 -0.01 0.91 16 30 H 0.10 0.89 7.67 -2.39 -0.02 0.87 16 31 H 0.07 0.98 7.94 -2.39 -0.02 0.96 16 32 H 0.05 1.29 7.94 -2.39 -0.02 1.27 16 33 H 0.10 1.43 7.67 -2.39 -0.02 1.41 16 34 H 0.11 1.80 3.92 -2.39 -0.01 1.79 16 35 H 0.13 1.61 2.35 -2.39 -0.01 1.61 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.04 1.51 6.43 -2.39 -0.02 1.50 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.06 2.06 7.41 -2.39 -0.02 2.05 16 41 H 0.00 -0.22 7.68 -2.39 -0.02 -0.24 16 42 H 0.01 0.41 7.29 -2.39 -0.02 0.39 16 43 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.17 7.07 -2.39 -0.02 2.16 16 Total: -1.00 -71.21 345.42 6.13 -65.08 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.02 Total: 8.16 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 4.94 Total: 15.27 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -3.98 Total: -103.66 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.04 Total: -19.47 kcal Atomic # 9 Polarization: -14.08 SS G_CDS: 2.16 Total: -11.92 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -71.21 6.13 -65.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036873996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.624 kcal (2) G-P(sol) polarization free energy of solvation -71.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds