Wall clock time and date at job start Tue Mar 31 2020 17:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 C 1.50706 * 109.46935 * 119.99665 * 2 1 3 5 5 O 1.21278 * 119.99857 * 123.77498 * 4 2 1 6 6 N 1.34775 * 119.99892 * 303.76657 * 4 2 1 7 7 C 1.47279 * 121.75619 * 353.64325 * 6 4 2 8 8 C 1.52761 * 107.25133 * 121.65376 * 7 6 4 9 9 C 1.53153 * 110.84116 * 58.70490 * 8 7 6 10 10 H 1.09007 * 111.79105 * 70.31224 * 9 8 7 11 11 C 1.53928 * 110.88482 * 304.72354 * 9 8 7 12 12 H 1.09006 * 109.50816 * 171.49835 * 11 9 8 13 13 C 1.54201 * 102.21252 * 286.66877 * 11 9 8 14 14 C 1.54721 * 102.06442 * 322.44181 * 13 11 9 15 15 N 1.47203 * 107.24400 * 21.51306 * 14 13 11 16 16 C 1.36942 * 125.89109 * 183.76087 * 15 14 13 17 17 H 1.07997 * 120.00421 * 174.19719 * 16 15 14 18 18 C 1.38812 * 119.99803 * 354.18822 * 16 15 14 19 19 N 1.31621 * 120.00068 * 5.43803 * 18 16 15 20 20 Si 1.86799 * 120.00140 * 185.43223 * 18 16 15 21 21 H 1.48499 * 109.47274 * 94.99996 * 20 18 16 22 22 H 1.48504 * 109.47040 * 214.99989 * 20 18 16 23 23 H 1.48500 * 109.46863 * 334.99744 * 20 18 16 24 24 C 1.46710 * 121.35680 * 174.67450 * 6 4 2 25 25 C 1.52999 * 109.47531 * 239.99694 * 2 1 3 26 26 F 1.39899 * 109.46880 * 300.00422 * 25 2 1 27 27 F 1.39904 * 109.46793 * 59.99787 * 25 2 1 28 28 F 1.39897 * 109.47345 * 180.02562 * 25 2 1 29 29 H 1.09001 * 109.47486 * 304.82069 * 1 2 3 30 30 H 1.09004 * 109.47128 * 64.82733 * 1 2 3 31 31 H 1.09004 * 109.47200 * 184.82488 * 1 2 3 32 32 H 1.09007 * 109.46955 * 191.00558 * 3 2 1 33 33 H 1.09003 * 109.47058 * 310.99914 * 3 2 1 34 34 H 1.08994 * 109.47851 * 71.00783 * 3 2 1 35 35 H 1.09001 * 109.36819 * 2.62625 * 7 6 4 36 36 H 1.09001 * 110.73080 * 241.44570 * 7 6 4 37 37 H 1.08999 * 109.20301 * 298.35016 * 8 7 6 38 38 H 1.09003 * 109.19779 * 179.05665 * 8 7 6 39 39 H 1.08999 * 110.91366 * 80.62864 * 13 11 9 40 40 H 1.09001 * 110.91076 * 204.24764 * 13 11 9 41 41 H 1.09010 * 109.88381 * 262.10501 * 14 13 11 42 42 H 1.08999 * 109.88594 * 140.92992 * 14 13 11 43 43 H 0.97000 * 120.00051 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.14401 * 111.75343 * 24 6 4 45 45 H 1.09000 * 109.14391 * 352.55078 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7849 -1.6550 1.1207 6 7 1.6452 -0.2958 2.4532 7 6 0.8460 0.9271 2.6399 8 6 -0.4444 0.5209 3.3496 9 6 -0.1399 -0.1460 4.6943 10 1 0.2428 0.5687 5.4230 11 6 0.8109 -1.3425 4.5106 12 1 1.1318 -1.7056 5.4870 13 6 -0.1126 -2.3975 3.8688 14 6 -1.4481 -2.1525 4.6108 15 7 -1.4032 -0.7833 5.1494 16 6 -2.3601 -0.1978 5.9348 17 1 -2.1880 0.7817 6.3560 18 6 -3.5514 -0.8631 6.1894 19 7 -3.7189 -2.0982 5.7664 20 14 -4.9170 -0.0058 7.1326 21 1 -5.8737 0.6035 6.1741 22 1 -5.6289 -0.9948 7.9813 23 1 -4.3340 1.0555 7.9922 24 6 2.0218 -1.0335 3.6641 25 6 2.0401 -0.7213 -1.2492 26 9 1.5737 -2.0403 -1.2491 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7218 -1.2488 29 1 -0.3634 0.5868 0.8436 30 1 -0.3633 0.4371 -0.9301 31 1 -0.3634 -1.0240 0.0864 32 1 3.1122 1.4488 -0.1962 33 1 1.5253 2.0098 -0.7756 34 1 1.8458 1.8966 0.9716 35 1 0.6121 1.3583 1.6665 36 1 1.3878 1.6534 3.2457 37 1 -0.9955 -0.1773 2.7197 38 1 -1.0546 1.4081 3.5193 39 1 -0.2234 -2.2187 2.7993 40 1 0.2580 -3.4051 4.0572 41 1 -1.5561 -2.8682 5.4258 42 1 -2.2818 -2.2504 3.9156 43 1 -4.5515 -2.5630 5.9440 44 1 2.7207 -0.4326 4.2459 45 1 2.5055 -1.9673 3.3778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036873998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:27 Heat of formation + Delta-G solvation = -142.795708 kcal Electronic energy + Delta-G solvation = -31903.128783 eV Core-core repulsion = 27314.052133 eV Total energy + Delta-G solvation = -4589.076650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.16022 -47.66026 -47.54332 -40.85570 -38.47731 -36.07665 -35.05907 -32.54270 -31.49904 -29.52974 -28.35729 -27.85029 -26.42472 -25.39491 -24.02609 -22.76442 -22.23509 -20.32753 -19.98602 -18.62243 -18.38030 -18.16833 -17.42778 -16.90282 -16.68697 -15.62549 -15.43053 -14.88968 -14.72071 -14.59923 -14.36304 -14.18070 -13.99969 -13.97080 -13.78520 -13.73977 -13.67706 -13.45916 -13.08327 -12.76102 -12.66724 -12.52242 -12.35839 -12.02769 -11.82255 -11.70660 -11.62418 -11.45457 -11.17510 -11.02805 -10.83892 -10.73412 -10.12746 -10.00311 -9.92458 -9.82288 -9.65254 -9.56571 -8.68256 -8.56017 -6.89852 -5.76334 -3.09766 2.37497 2.46879 2.91059 3.35764 3.41011 3.43580 3.54145 3.86132 3.88492 4.33815 4.43205 4.50404 4.63943 4.84733 4.96352 5.08341 5.21335 5.24816 5.26227 5.35148 5.37898 5.39257 5.45614 5.54630 5.66620 5.74787 5.81540 5.83986 5.91944 6.01069 6.18170 6.19122 6.30619 6.44280 6.54765 6.65554 6.81701 6.98764 7.33611 7.51675 7.59954 7.78796 7.98512 8.19409 9.16009 9.76188 10.44115 11.35247 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003438 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.027798 B = 8141.951628 C = 8328.023106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.129 4.129 3 C -0.163 4.163 4 C 0.533 3.467 5 O -0.528 6.528 6 N -0.592 5.592 7 C 0.081 3.919 8 C -0.147 4.147 9 C 0.167 3.833 10 H 0.060 0.940 11 C -0.114 4.114 12 H 0.082 0.918 13 C -0.136 4.136 14 C 0.179 3.821 15 N -0.600 5.600 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C 0.128 3.872 25 C 0.476 3.524 26 F -0.172 7.172 27 F -0.182 7.182 28 F -0.173 7.173 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.039 0.961 43 H 0.252 0.748 44 H 0.065 0.935 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.488 7.384 -11.715 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.134 4.134 3 C -0.219 4.219 4 C 0.318 3.682 5 O -0.405 6.405 6 N -0.324 5.324 7 C -0.042 4.042 8 C -0.187 4.187 9 C 0.059 3.941 10 H 0.078 0.922 11 C -0.134 4.134 12 H 0.100 0.900 13 C -0.175 4.175 14 C 0.054 3.946 15 N -0.324 5.324 16 C -0.358 4.358 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.005 3.995 25 C 0.421 3.579 26 F -0.153 7.153 27 F -0.163 7.163 28 F -0.154 7.154 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.083 0.917 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.648 6.758 -11.673 17.822 hybrid contribution -0.871 0.252 0.295 0.953 sum 10.778 7.010 -11.377 17.168 Atomic orbital electron populations 1.22345 0.88861 1.05472 1.05472 1.22028 1.00969 0.98855 0.91525 1.22272 1.02907 0.91143 1.05624 1.19523 0.80936 0.83895 0.83809 1.90776 1.35216 1.28531 1.85944 1.47852 1.52789 1.26384 1.05356 1.22540 0.93406 0.86282 1.01932 1.22595 0.95091 1.01862 0.99198 1.21133 0.87616 0.92687 0.92633 0.92188 1.21901 0.94430 0.98190 0.98922 0.89953 1.22774 0.98186 0.97245 0.99267 1.21195 0.91076 0.86530 0.95767 1.44927 1.18323 1.10712 1.58472 1.19033 0.93744 1.00402 1.22603 0.90502 1.24804 0.97919 0.96461 1.01018 1.69977 1.25524 1.10263 1.50795 0.86157 0.82397 0.78414 0.79131 1.21675 1.21812 1.20665 1.21034 0.96696 0.97342 0.84389 1.19757 0.75873 0.77748 0.84512 1.93209 1.88303 1.37141 1.96646 1.93161 1.88585 1.80900 1.53667 1.93188 1.29266 1.96312 1.96654 0.88027 0.90085 0.90375 0.90616 0.89798 0.88602 0.88576 0.90633 0.91117 0.91069 0.92790 0.92370 0.93607 0.94330 0.93757 0.91695 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 7.87 37.16 0.29 -1.40 16 2 C -0.13 -1.46 0.32 -155.66 -0.05 -1.51 16 3 C -0.16 -1.33 7.85 37.16 0.29 -1.04 16 4 C 0.53 7.50 6.26 -10.98 -0.07 7.43 16 5 O -0.53 -9.25 14.34 5.56 0.08 -9.17 16 6 N -0.59 -7.67 2.77 -174.27 -0.48 -8.15 16 7 C 0.08 0.89 4.36 -3.74 -0.02 0.87 16 8 C -0.15 -2.19 4.78 -26.77 -0.13 -2.32 16 9 C 0.17 2.97 3.59 -66.19 -0.24 2.74 16 10 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 11 C -0.11 -1.85 2.89 -90.54 -0.26 -2.11 16 12 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 13 C -0.14 -2.51 5.89 -25.20 -0.15 -2.65 16 14 C 0.18 4.16 5.11 -2.75 -0.01 4.15 16 15 N -0.60 -14.02 2.90 -161.79 -0.47 -14.49 16 16 C -0.23 -5.99 10.29 -15.06 -0.16 -6.15 16 17 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 19 N -0.92 -26.26 10.39 55.49 0.58 -25.68 16 20 Si 0.91 21.35 29.56 -169.99 -5.02 16.32 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.13 1.75 5.80 -4.96 -0.03 1.73 16 25 C 0.48 6.13 1.96 37.16 0.07 6.21 16 26 F -0.17 -2.57 16.06 2.25 0.04 -2.53 16 27 F -0.18 -2.08 16.40 2.25 0.04 -2.05 16 28 F -0.17 -2.43 15.62 2.25 0.04 -2.39 16 29 H 0.10 0.99 3.90 -51.93 -0.20 0.79 16 30 H 0.08 0.68 7.67 -51.93 -0.40 0.28 16 31 H 0.08 0.93 7.94 -51.93 -0.41 0.51 16 32 H 0.07 0.64 7.52 -51.93 -0.39 0.25 16 33 H 0.08 0.54 8.06 -51.93 -0.42 0.12 16 34 H 0.10 0.67 4.88 -51.93 -0.25 0.42 16 35 H 0.10 0.85 2.68 -51.93 -0.14 0.71 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 1.20 6.41 -51.93 -0.33 0.86 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.05 0.99 7.43 -51.93 -0.39 0.60 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.20 7.43 -51.92 -0.39 0.82 16 42 H 0.04 1.01 7.52 -51.93 -0.39 0.62 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.31 7.08 -51.93 -0.37 0.94 16 LS Contribution 345.30 15.07 5.20 5.20 Total: -1.00 -30.90 345.30 -6.71 -37.62 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.16 Total: -0.39 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.55 Total: 5.71 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.38 Total: -48.32 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.08 Total: -9.17 kcal Atomic # 9 Polarization: -7.07 SS G_CDS: 0.11 Total: -6.97 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.90 -6.71 -37.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036873998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.178 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds