Wall clock time and date at job start Tue Mar 31 2020 17:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46903 * 2 1 4 4 C 1.50706 * 109.46935 * 119.99665 * 2 1 3 5 5 O 1.21278 * 119.99857 * 123.77498 * 4 2 1 6 6 N 1.34775 * 119.99892 * 303.76657 * 4 2 1 7 7 C 1.47279 * 121.75619 * 353.64325 * 6 4 2 8 8 C 1.52761 * 107.25133 * 121.65376 * 7 6 4 9 9 C 1.53153 * 110.84116 * 58.70490 * 8 7 6 10 10 H 1.09007 * 111.79105 * 70.31224 * 9 8 7 11 11 C 1.53928 * 110.88482 * 304.72354 * 9 8 7 12 12 H 1.09006 * 109.50816 * 171.49835 * 11 9 8 13 13 C 1.54201 * 102.21252 * 286.66877 * 11 9 8 14 14 C 1.54721 * 102.06442 * 322.44181 * 13 11 9 15 15 N 1.47203 * 107.24400 * 21.51306 * 14 13 11 16 16 C 1.36942 * 125.89109 * 183.76087 * 15 14 13 17 17 H 1.07997 * 120.00421 * 174.19719 * 16 15 14 18 18 C 1.38812 * 119.99803 * 354.18822 * 16 15 14 19 19 N 1.31621 * 120.00068 * 5.43803 * 18 16 15 20 20 Si 1.86799 * 120.00140 * 185.43223 * 18 16 15 21 21 H 1.48499 * 109.47274 * 94.99996 * 20 18 16 22 22 H 1.48504 * 109.47040 * 214.99989 * 20 18 16 23 23 H 1.48500 * 109.46863 * 334.99744 * 20 18 16 24 24 C 1.46710 * 121.35680 * 174.67450 * 6 4 2 25 25 C 1.52999 * 109.47531 * 239.99694 * 2 1 3 26 26 F 1.39899 * 109.46880 * 300.00422 * 25 2 1 27 27 F 1.39904 * 109.46793 * 59.99787 * 25 2 1 28 28 F 1.39897 * 109.47345 * 180.02562 * 25 2 1 29 29 H 1.09001 * 109.47486 * 304.82069 * 1 2 3 30 30 H 1.09004 * 109.47128 * 64.82733 * 1 2 3 31 31 H 1.09004 * 109.47200 * 184.82488 * 1 2 3 32 32 H 1.09007 * 109.46955 * 191.00558 * 3 2 1 33 33 H 1.09003 * 109.47058 * 310.99914 * 3 2 1 34 34 H 1.08994 * 109.47851 * 71.00783 * 3 2 1 35 35 H 1.09001 * 109.36819 * 2.62625 * 7 6 4 36 36 H 1.09001 * 110.73080 * 241.44570 * 7 6 4 37 37 H 1.08999 * 109.20301 * 298.35016 * 8 7 6 38 38 H 1.09003 * 109.19779 * 179.05665 * 8 7 6 39 39 H 1.08999 * 110.91366 * 80.62864 * 13 11 9 40 40 H 1.09001 * 110.91076 * 204.24764 * 13 11 9 41 41 H 1.09010 * 109.88381 * 262.10501 * 14 13 11 42 42 H 1.08999 * 109.88594 * 140.92992 * 14 13 11 43 43 H 0.97000 * 120.00051 * 180.02562 * 19 18 16 44 44 H 1.08997 * 109.14401 * 111.75343 * 24 6 4 45 45 H 1.09000 * 109.14391 * 352.55078 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7849 -1.6550 1.1207 6 7 1.6452 -0.2958 2.4532 7 6 0.8460 0.9271 2.6399 8 6 -0.4444 0.5209 3.3496 9 6 -0.1399 -0.1460 4.6943 10 1 0.2428 0.5687 5.4230 11 6 0.8109 -1.3425 4.5106 12 1 1.1318 -1.7056 5.4870 13 6 -0.1126 -2.3975 3.8688 14 6 -1.4481 -2.1525 4.6108 15 7 -1.4032 -0.7833 5.1494 16 6 -2.3601 -0.1978 5.9348 17 1 -2.1880 0.7817 6.3560 18 6 -3.5514 -0.8631 6.1894 19 7 -3.7189 -2.0982 5.7664 20 14 -4.9170 -0.0058 7.1326 21 1 -5.8737 0.6035 6.1741 22 1 -5.6289 -0.9948 7.9813 23 1 -4.3340 1.0555 7.9922 24 6 2.0218 -1.0335 3.6641 25 6 2.0401 -0.7213 -1.2492 26 9 1.5737 -2.0403 -1.2491 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7218 -1.2488 29 1 -0.3634 0.5868 0.8436 30 1 -0.3633 0.4371 -0.9301 31 1 -0.3634 -1.0240 0.0864 32 1 3.1122 1.4488 -0.1962 33 1 1.5253 2.0098 -0.7756 34 1 1.8458 1.8966 0.9716 35 1 0.6121 1.3583 1.6665 36 1 1.3878 1.6534 3.2457 37 1 -0.9955 -0.1773 2.7197 38 1 -1.0546 1.4081 3.5193 39 1 -0.2234 -2.2187 2.7993 40 1 0.2580 -3.4051 4.0572 41 1 -1.5561 -2.8682 5.4258 42 1 -2.2818 -2.2504 3.9156 43 1 -4.5515 -2.5630 5.9440 44 1 2.7207 -0.4326 4.2459 45 1 2.5055 -1.9673 3.3778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036873998.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:26 Heat of formation + Delta-G solvation = -160.860208 kcal Electronic energy + Delta-G solvation = -31903.912118 eV Core-core repulsion = 27314.052133 eV Total energy + Delta-G solvation = -4589.859985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.16855 -48.64198 -48.60938 -41.97005 -39.86924 -37.17750 -36.31835 -34.28597 -32.81285 -31.14994 -29.91197 -28.55784 -27.42025 -26.79637 -25.64318 -23.97773 -23.33128 -21.89297 -21.29594 -19.74777 -19.41140 -19.34442 -18.74019 -18.43166 -17.77223 -16.78677 -16.59757 -16.52987 -16.09127 -15.68933 -15.56534 -15.46924 -15.13995 -15.02075 -14.92332 -14.80476 -14.71556 -14.47697 -14.31783 -14.15672 -13.85143 -13.52403 -13.45466 -13.29502 -13.22473 -13.00031 -12.87054 -12.68895 -12.66343 -12.50806 -12.38093 -11.99997 -11.90449 -11.60535 -11.47395 -11.30202 -11.14731 -10.78668 -10.66244 -9.71064 -8.84261 -7.80864 -5.14637 1.33513 1.48023 1.48872 1.49204 1.58064 1.90906 2.52259 2.58664 2.90470 2.95622 3.38025 3.42225 3.56061 3.63610 3.74820 3.81576 3.90759 4.06022 4.14337 4.28076 4.42267 4.45907 4.50058 4.54656 4.62252 4.62903 4.65290 4.77777 4.80716 4.83542 4.92699 5.00124 5.09815 5.12765 5.14764 5.35301 5.47407 5.53404 5.63182 5.71294 5.80092 6.22033 6.28676 6.92063 7.13086 7.81662 8.49109 9.30315 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003438 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.027798 B = 8141.951628 C = 8328.023106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.123 4.123 3 C -0.161 4.161 4 C 0.528 3.472 5 O -0.568 6.568 6 N -0.590 5.590 7 C 0.088 3.912 8 C -0.137 4.137 9 C 0.161 3.839 10 H 0.073 0.927 11 C -0.100 4.100 12 H 0.080 0.920 13 C -0.123 4.123 14 C 0.192 3.808 15 N -0.619 5.619 16 C -0.228 4.228 17 H 0.089 0.911 18 C -0.069 4.069 19 N -0.955 5.955 20 Si 0.972 3.028 21 H -0.290 1.290 22 H -0.303 1.303 23 H -0.264 1.264 24 C 0.134 3.866 25 C 0.469 3.531 26 F -0.189 7.189 27 F -0.172 7.172 28 F -0.181 7.181 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.055 0.945 40 H 0.063 0.937 41 H 0.004 0.996 42 H -0.001 1.001 43 H 0.242 0.758 44 H 0.096 0.904 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.882 10.632 -12.216 20.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.127 4.127 3 C -0.218 4.218 4 C 0.315 3.685 5 O -0.447 6.447 6 N -0.321 5.321 7 C -0.033 4.033 8 C -0.177 4.177 9 C 0.055 3.945 10 H 0.091 0.909 11 C -0.120 4.120 12 H 0.098 0.902 13 C -0.161 4.161 14 C 0.067 3.933 15 N -0.343 5.343 16 C -0.357 4.357 17 H 0.107 0.893 18 C -0.261 4.261 19 N -0.605 5.605 20 Si 0.801 3.199 21 H -0.217 1.217 22 H -0.230 1.230 23 H -0.189 1.189 24 C 0.011 3.989 25 C 0.415 3.585 26 F -0.171 7.171 27 F -0.154 7.154 28 F -0.163 7.163 29 H 0.128 0.872 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.142 0.858 36 H 0.127 0.873 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.022 0.978 42 H 0.017 0.983 43 H 0.052 0.948 44 H 0.114 0.886 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.076 10.066 -12.180 20.510 hybrid contribution -1.276 -0.778 0.440 1.558 sum 11.800 9.288 -11.740 19.062 Atomic orbital electron populations 1.22373 0.88096 1.04457 1.07033 1.22072 1.01311 1.00215 0.89139 1.22381 1.03100 0.88796 1.07496 1.20006 0.80333 0.83403 0.84715 1.90761 1.37120 1.30275 1.86557 1.47913 1.52563 1.26785 1.04885 1.22694 0.91250 0.85835 1.03564 1.22362 0.97114 1.01001 0.97238 1.21461 0.85406 0.93346 0.94297 0.90875 1.21808 0.94660 0.96406 0.99143 0.90200 1.22589 0.96141 0.98640 0.98747 1.20827 0.92402 0.86269 0.93819 1.45192 1.19803 1.11078 1.58263 1.19473 0.94063 1.00461 1.21681 0.89344 1.25597 1.00430 0.97133 1.02964 1.70208 1.25462 1.11863 1.52949 0.85149 0.79550 0.77374 0.77837 1.21686 1.23045 1.18857 1.20934 0.95468 0.97885 0.84603 1.20075 0.75542 0.77301 0.85587 1.93174 1.88465 1.38659 1.96788 1.93175 1.88389 1.80499 1.53288 1.93168 1.30039 1.96312 1.96756 0.87231 0.87830 0.92639 0.90691 0.87419 0.86902 0.85819 0.87317 0.93569 0.90762 0.92661 0.91795 0.97756 0.98328 0.94823 0.88574 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 7.87 71.98 0.57 -2.38 16 2 C -0.12 -2.45 0.32 -52.93 -0.02 -2.47 16 3 C -0.16 -1.94 7.85 71.98 0.56 -1.37 16 4 C 0.53 13.79 6.26 87.66 0.55 14.34 16 5 O -0.57 -19.38 14.34 -3.02 -0.04 -19.43 16 6 N -0.59 -13.54 2.77 -823.64 -2.28 -15.82 16 7 C 0.09 1.55 4.36 86.15 0.38 1.92 16 8 C -0.14 -3.74 4.78 30.57 0.15 -3.59 16 9 C 0.16 5.42 3.59 44.95 0.16 5.58 16 10 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 11 C -0.10 -3.09 2.89 -10.74 -0.03 -3.13 16 12 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 13 C -0.12 -4.58 5.89 31.59 0.19 -4.40 16 14 C 0.19 9.37 5.11 86.83 0.44 9.81 16 15 N -0.62 -29.11 2.90 -665.77 -1.93 -31.05 16 16 C -0.23 -11.89 10.29 84.03 0.87 -11.02 16 17 H 0.09 4.32 7.83 -2.91 -0.02 4.29 16 18 C -0.07 -3.79 5.48 84.86 0.47 -3.32 16 19 N -0.96 -57.14 10.39 21.65 0.22 -56.92 16 20 Si 0.97 44.45 29.56 68.60 2.03 46.48 16 21 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 C 0.13 3.32 5.80 85.67 0.50 3.82 16 25 C 0.47 11.40 1.96 71.98 0.14 11.54 16 26 F -0.19 -5.63 16.06 44.97 0.72 -4.91 16 27 F -0.17 -3.57 16.40 44.97 0.74 -2.83 16 28 F -0.18 -4.87 15.62 44.97 0.70 -4.17 16 29 H 0.11 1.78 3.90 -2.39 -0.01 1.77 16 30 H 0.10 1.41 7.67 -2.39 -0.02 1.39 16 31 H 0.05 1.27 7.94 -2.39 -0.02 1.25 16 32 H 0.07 0.98 7.52 -2.38 -0.02 0.96 16 33 H 0.11 0.84 8.06 -2.39 -0.02 0.82 16 34 H 0.11 0.96 4.88 -2.39 -0.01 0.95 16 35 H 0.12 1.56 2.68 -2.39 -0.01 1.56 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.05 1.51 6.41 -2.39 -0.02 1.49 16 38 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 2.05 7.43 -2.39 -0.02 2.03 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.00 0.23 7.43 -2.38 -0.02 0.22 16 42 H 0.00 -0.08 7.52 -2.39 -0.02 -0.10 16 43 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 2.17 7.08 -2.39 -0.02 2.15 16 Total: -1.00 -71.33 345.30 6.10 -65.24 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.02 Total: 8.08 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: 4.91 Total: 15.32 kcal Atomic # 7 Polarization: -99.80 SS G_CDS: -3.99 Total: -103.78 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.04 Total: -19.43 kcal Atomic # 9 Polarization: -14.07 SS G_CDS: 2.16 Total: -11.91 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.33 6.10 -65.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036873998.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.625 kcal (2) G-P(sol) polarization free energy of solvation -71.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds