Wall clock time and date at job start Tue Mar 31 2020 17:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.09003 * 109.52501 * 54.91849 * 3 2 1 5 5 C 1.53195 * 109.49745 * 294.84106 * 3 2 1 6 6 N 1.46921 * 108.77274 * 185.41151 * 5 3 2 7 7 C 1.34779 * 120.63010 * 233.58279 * 6 5 3 8 8 O 1.21286 * 120.00001 * 355.66577 * 7 6 5 9 9 C 1.50704 * 120.00179 * 175.66698 * 7 6 5 10 10 C 1.52994 * 115.54736 * 76.53897 * 9 7 6 11 11 F 1.39899 * 109.47604 * 65.34541 * 10 9 7 12 12 F 1.39907 * 109.46918 * 185.34669 * 10 9 7 13 13 F 1.39903 * 109.47377 * 305.33689 * 10 9 7 14 14 C 1.53001 * 117.49664 * 290.86604 * 9 7 6 15 15 C 1.53005 * 117.49787 * 222.20679 * 9 7 6 16 16 C 1.46923 * 118.74232 * 53.60766 * 6 5 3 17 17 C 1.53193 * 108.77412 * 306.38995 * 16 6 5 18 18 C 1.53031 * 109.31024 * 54.63571 * 17 16 6 19 19 H 1.08998 * 109.46571 * 58.64151 * 18 17 16 20 20 N 1.46508 * 109.45786 * 178.61689 * 18 17 16 21 21 C 1.36943 * 119.99659 * 274.99757 * 20 18 17 22 22 H 1.08002 * 119.99736 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99743 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00152 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99845 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47001 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.47157 * 300.00059 * 25 23 21 28 28 H 1.48497 * 109.47303 * 59.99768 * 25 23 21 29 29 H 1.09001 * 109.47454 * 59.99948 * 1 2 3 30 30 H 1.08998 * 109.47001 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47396 * 299.99752 * 1 2 3 32 32 H 1.08998 * 109.47396 * 240.00248 * 2 1 3 33 33 H 1.09001 * 109.47454 * 120.00052 * 2 1 3 34 34 H 1.08997 * 109.58805 * 65.62449 * 5 3 2 35 35 H 1.08998 * 109.58354 * 305.19340 * 5 3 2 36 36 H 1.08995 * 117.50062 * 359.97438 * 14 9 7 37 37 H 1.09000 * 117.49486 * 145.02158 * 14 9 7 38 38 H 1.08993 * 117.49295 * 214.97901 * 15 9 7 39 39 H 1.09000 * 117.49622 * 359.97438 * 15 9 7 40 40 H 1.09005 * 109.58902 * 186.59830 * 16 6 5 41 41 H 1.09006 * 109.70345 * 66.25042 * 16 6 5 42 42 H 1.08997 * 109.49437 * 294.67937 * 17 16 6 43 43 H 1.09000 * 109.52042 * 174.60311 * 17 16 6 44 44 H 0.96991 * 120.00551 * 94.99708 * 20 18 17 45 45 H 0.96996 * 120.00259 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6384 2.1268 -1.3105 6 7 2.2450 3.4644 -1.3506 7 6 1.4856 4.5565 -1.5681 8 8 0.3036 4.4347 -1.8109 9 6 2.1053 5.9290 -1.5095 10 6 2.9385 6.3293 -2.7286 11 9 2.1073 6.4282 -3.8496 12 9 3.5493 7.5652 -2.4905 13 9 3.9210 5.3607 -2.9605 14 6 2.5638 6.4393 -0.1419 15 6 1.3153 7.0311 -0.8009 16 6 3.6951 3.5889 -1.1498 17 6 4.0735 2.8882 0.1589 18 6 3.5652 1.4452 0.1257 19 1 4.0006 0.9263 -0.7282 20 7 3.9541 0.7621 1.3621 21 6 5.1918 0.1852 1.4653 22 1 5.8809 0.2334 0.6352 23 6 5.5605 -0.4615 2.6370 24 7 4.7204 -0.5206 3.6484 25 14 7.2490 -1.2478 2.7781 26 1 7.3950 -1.8696 4.1187 27 1 7.3989 -2.2899 1.7307 28 1 8.2953 -0.2097 2.5967 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5532 2.2161 -1.3585 35 1 1.9965 1.5378 -2.1548 36 1 2.4168 5.7826 0.7155 37 1 3.4588 7.0606 -0.1108 38 1 1.3895 8.0414 -1.2031 39 1 0.3471 6.7636 -0.3775 40 1 3.9669 4.6429 -1.0918 41 1 4.2227 3.1207 -1.9808 42 1 3.6191 3.4149 0.9981 43 1 5.1576 2.8896 0.2725 44 1 3.3350 0.7186 2.1075 45 1 4.9781 -0.9722 4.4673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037920169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:24 Heat of formation + Delta-G solvation = -151.103827 kcal Electronic energy + Delta-G solvation = -31178.606890 eV Core-core repulsion = 26589.169973 eV Total energy + Delta-G solvation = -4589.436917 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.42024 -47.95545 -47.85738 -40.58668 -38.28322 -36.79941 -34.79016 -33.79794 -31.77964 -29.57454 -29.00500 -27.54737 -25.46512 -24.04038 -23.37038 -23.00824 -22.36290 -20.89307 -20.01828 -19.30046 -18.63624 -18.60232 -18.20586 -17.14609 -16.47637 -16.04749 -15.30698 -15.08143 -14.80267 -14.72783 -14.49558 -14.29662 -14.14997 -14.09162 -13.95793 -13.90877 -13.76316 -13.36425 -13.29170 -13.07318 -12.82361 -12.48360 -12.15812 -12.02396 -11.89275 -11.60368 -11.34028 -11.22610 -11.14299 -10.94692 -10.86215 -10.71568 -10.41145 -10.26969 -10.20106 -9.97623 -9.74468 -9.64676 -8.93325 -8.59681 -7.00542 -5.81132 -3.10019 1.99863 2.56798 2.64532 2.96536 3.40411 3.42148 3.45655 3.46200 3.73005 3.97909 4.08075 4.37880 4.41987 4.54421 4.95569 5.03723 5.15527 5.16328 5.20774 5.32700 5.40177 5.41481 5.55031 5.57369 5.60637 5.63031 5.66965 5.81890 5.97050 6.06918 6.10809 6.27188 6.29243 6.34089 6.40766 6.48289 6.61289 6.78080 6.90382 6.99894 7.31682 7.65205 7.96928 8.37012 9.48675 10.05268 10.40296 11.41148 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.003643 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.970035 B = 7684.749817 C = 8723.359802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.556 3.444 8 O -0.527 6.527 9 C -0.239 4.239 10 C 0.498 3.502 11 F -0.172 7.172 12 F -0.176 7.176 13 F -0.170 7.170 14 C -0.131 4.131 15 C -0.116 4.116 16 C 0.102 3.898 17 C -0.151 4.151 18 C 0.183 3.817 19 H 0.049 0.951 20 N -0.719 5.719 21 C -0.240 4.240 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.286 1.286 28 H -0.286 1.286 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.984 14.233 -10.701 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.340 3.660 8 O -0.403 6.403 9 C -0.243 4.243 10 C 0.444 3.556 11 F -0.154 7.154 12 F -0.157 7.157 13 F -0.151 7.151 14 C -0.168 4.168 15 C -0.153 4.153 16 C -0.021 4.021 17 C -0.192 4.192 18 C 0.072 3.928 19 H 0.067 0.933 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.213 1.213 28 H -0.213 1.213 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.408 14.051 -10.865 18.882 hybrid contribution 1.132 -0.397 0.131 1.207 sum -5.277 13.653 -10.734 18.151 Atomic orbital electron populations 1.21846 0.96787 1.01127 1.01265 1.21452 0.94378 0.95562 1.03595 1.21788 0.97794 0.96351 0.96424 0.91162 1.21853 0.99381 0.80870 0.98242 1.48094 1.08845 1.06396 1.68855 1.18681 0.86114 0.83489 0.77669 1.90708 1.15386 1.85869 1.48382 1.22498 1.08442 0.98524 0.94865 1.19047 0.78222 0.74694 0.83662 1.93228 1.71650 1.95873 1.54612 1.93184 1.84112 1.44042 1.94364 1.93223 1.63928 1.62942 1.95016 1.23369 0.99960 1.02049 0.91466 1.23191 0.97661 0.95510 0.98908 1.22173 0.78834 1.01693 0.99406 1.22711 1.02389 0.99229 0.94919 1.20193 0.90674 0.90594 0.91321 0.93341 1.42391 1.16503 1.64459 1.12619 1.19167 0.91819 1.27505 0.98581 0.91290 1.24710 0.98089 1.01454 0.96412 1.69642 1.35285 1.48363 1.04722 0.86314 0.84167 0.79209 0.76747 1.21755 1.21301 1.21318 0.93234 0.93101 0.92996 0.92379 0.89673 0.89018 0.91244 0.86074 0.86226 0.86633 0.86126 0.90165 0.90976 0.92196 0.90388 0.78201 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.67 37.15 0.36 -1.68 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.10 -1.61 1.92 -90.50 -0.17 -1.79 16 4 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 5 C 0.12 1.67 5.32 -3.71 -0.02 1.65 16 6 N -0.59 -8.16 2.97 -172.77 -0.51 -8.68 16 7 C 0.56 7.86 6.75 -10.98 -0.07 7.78 16 8 O -0.53 -8.92 16.38 5.55 0.09 -8.83 16 9 C -0.24 -2.65 1.05 -155.66 -0.16 -2.81 16 10 C 0.50 5.62 3.01 37.15 0.11 5.73 16 11 F -0.17 -2.17 17.29 2.25 0.04 -2.13 16 12 F -0.18 -1.77 15.90 2.25 0.04 -1.73 16 13 F -0.17 -2.01 13.66 2.25 0.03 -1.98 16 14 C -0.13 -1.13 8.52 -26.69 -0.23 -1.36 16 15 C -0.12 -1.00 9.58 -26.69 -0.26 -1.25 16 16 C 0.10 1.33 4.60 -3.71 -0.02 1.32 16 17 C -0.15 -2.39 5.66 -26.62 -0.15 -2.54 16 18 C 0.18 3.29 2.19 -67.89 -0.15 3.14 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 N -0.72 -16.54 4.33 -53.38 -0.23 -16.78 16 21 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 22 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 25 Si 0.90 21.63 29.55 -169.99 -5.02 16.61 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.05 0.61 6.70 -51.93 -0.35 0.26 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.59 7.22 -51.93 -0.37 1.22 16 34 H 0.09 1.33 5.75 -51.93 -0.30 1.03 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.12 0.84 7.63 -51.93 -0.40 0.45 16 38 H 0.12 0.79 7.94 -51.93 -0.41 0.38 16 39 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 0.93 4.09 -51.93 -0.21 0.72 16 41 H 0.07 0.93 8.00 -51.93 -0.42 0.52 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.38 9.56 7.51 -40.82 -0.31 9.25 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 365.81 15.07 5.51 5.51 Total: -1.00 -29.62 365.81 -7.02 -36.63 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.53 Total: 8.11 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.15 Total: -0.46 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.02 Total: -51.74 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.11 Total: -5.84 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.62 -7.02 -36.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.470 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds