Wall clock time and date at job start Tue Mar 31 2020 17:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47188 * 2 1 4 4 H 1.09003 * 109.52501 * 54.91849 * 3 2 1 5 5 C 1.53195 * 109.49745 * 294.84106 * 3 2 1 6 6 N 1.46921 * 108.77274 * 185.41151 * 5 3 2 7 7 C 1.34779 * 120.63010 * 233.58279 * 6 5 3 8 8 O 1.21286 * 120.00001 * 355.66577 * 7 6 5 9 9 C 1.50704 * 120.00179 * 175.66698 * 7 6 5 10 10 C 1.52994 * 115.54736 * 76.53897 * 9 7 6 11 11 F 1.39899 * 109.47604 * 65.34541 * 10 9 7 12 12 F 1.39907 * 109.46918 * 185.34669 * 10 9 7 13 13 F 1.39903 * 109.47377 * 305.33689 * 10 9 7 14 14 C 1.53001 * 117.49664 * 290.86604 * 9 7 6 15 15 C 1.53005 * 117.49787 * 222.20679 * 9 7 6 16 16 C 1.46923 * 118.74232 * 53.60766 * 6 5 3 17 17 C 1.53193 * 108.77412 * 306.38995 * 16 6 5 18 18 C 1.53031 * 109.31024 * 54.63571 * 17 16 6 19 19 H 1.08998 * 109.46571 * 58.64151 * 18 17 16 20 20 N 1.46508 * 109.45786 * 178.61689 * 18 17 16 21 21 C 1.36943 * 119.99659 * 274.99757 * 20 18 17 22 22 H 1.08002 * 119.99736 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99743 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00152 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99845 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47001 * 180.02562 * 25 23 21 27 27 H 1.48504 * 109.47157 * 300.00059 * 25 23 21 28 28 H 1.48497 * 109.47303 * 59.99768 * 25 23 21 29 29 H 1.09001 * 109.47454 * 59.99948 * 1 2 3 30 30 H 1.08998 * 109.47001 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47396 * 299.99752 * 1 2 3 32 32 H 1.08998 * 109.47396 * 240.00248 * 2 1 3 33 33 H 1.09001 * 109.47454 * 120.00052 * 2 1 3 34 34 H 1.08997 * 109.58805 * 65.62449 * 5 3 2 35 35 H 1.08998 * 109.58354 * 305.19340 * 5 3 2 36 36 H 1.08995 * 117.50062 * 359.97438 * 14 9 7 37 37 H 1.09000 * 117.49486 * 145.02158 * 14 9 7 38 38 H 1.08993 * 117.49295 * 214.97901 * 15 9 7 39 39 H 1.09000 * 117.49622 * 359.97438 * 15 9 7 40 40 H 1.09005 * 109.58902 * 186.59830 * 16 6 5 41 41 H 1.09006 * 109.70345 * 66.25042 * 16 6 5 42 42 H 1.08997 * 109.49437 * 294.67937 * 17 16 6 43 43 H 1.09000 * 109.52042 * 174.60311 * 17 16 6 44 44 H 0.96991 * 120.00551 * 94.99708 * 20 18 17 45 45 H 0.96996 * 120.00259 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8407 5 6 1.6384 2.1268 -1.3105 6 7 2.2450 3.4644 -1.3506 7 6 1.4856 4.5565 -1.5681 8 8 0.3036 4.4347 -1.8109 9 6 2.1053 5.9290 -1.5095 10 6 2.9385 6.3293 -2.7286 11 9 2.1073 6.4282 -3.8496 12 9 3.5493 7.5652 -2.4905 13 9 3.9210 5.3607 -2.9605 14 6 2.5638 6.4393 -0.1419 15 6 1.3153 7.0311 -0.8009 16 6 3.6951 3.5889 -1.1498 17 6 4.0735 2.8882 0.1589 18 6 3.5652 1.4452 0.1257 19 1 4.0006 0.9263 -0.7282 20 7 3.9541 0.7621 1.3621 21 6 5.1918 0.1852 1.4653 22 1 5.8809 0.2334 0.6352 23 6 5.5605 -0.4615 2.6370 24 7 4.7204 -0.5206 3.6484 25 14 7.2490 -1.2478 2.7781 26 1 7.3950 -1.8696 4.1187 27 1 7.3989 -2.2899 1.7307 28 1 8.2953 -0.2097 2.5967 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5532 2.2161 -1.3585 35 1 1.9965 1.5378 -2.1548 36 1 2.4168 5.7826 0.7155 37 1 3.4588 7.0606 -0.1108 38 1 1.3895 8.0414 -1.2031 39 1 0.3471 6.7636 -0.3775 40 1 3.9669 4.6429 -1.0918 41 1 4.2227 3.1207 -1.9808 42 1 3.6191 3.4149 0.9981 43 1 5.1576 2.8896 0.2725 44 1 3.3350 0.7186 2.1075 45 1 4.9781 -0.9722 4.4673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037920169.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:23 Heat of formation + Delta-G solvation = -167.416431 kcal Electronic energy + Delta-G solvation = -31179.314258 eV Core-core repulsion = 26589.169973 eV Total energy + Delta-G solvation = -4590.144285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.28871 -48.80904 -48.75139 -41.68846 -39.51159 -37.74823 -36.23831 -35.27910 -33.46851 -31.11441 -30.26967 -28.47436 -26.87469 -25.42220 -24.75857 -23.70459 -23.55888 -22.23313 -21.24085 -20.40621 -19.60213 -19.48108 -19.18970 -19.01102 -17.62175 -17.01131 -16.77534 -16.22437 -16.07060 -15.66879 -15.59159 -15.42395 -15.35422 -15.17227 -15.05685 -14.95204 -14.78854 -14.72341 -14.52579 -14.47874 -14.00515 -13.64812 -13.45764 -13.07293 -13.05054 -12.80292 -12.66650 -12.63060 -12.53769 -12.21314 -12.13667 -11.96556 -11.91507 -11.79864 -11.57559 -11.52318 -11.10497 -11.09259 -10.78412 -9.79794 -8.93867 -7.89029 -5.16121 1.01021 1.50479 1.51690 1.57569 1.60329 1.71893 2.11830 2.58102 2.59735 2.81669 3.16291 3.19581 3.44178 3.55747 3.62142 3.76265 3.78324 3.96855 4.04367 4.20608 4.31974 4.34831 4.41860 4.45895 4.53828 4.62760 4.73053 4.77156 4.78581 4.80919 4.87451 4.96390 4.99862 5.03786 5.16052 5.26988 5.34739 5.45167 5.52263 5.58481 5.63748 6.19756 6.32380 6.86225 7.39633 8.15297 8.38761 9.34069 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014867 B = 0.003643 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.970035 B = 7684.749817 C = 8723.359802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.090 4.090 4 H 0.059 0.941 5 C 0.124 3.876 6 N -0.593 5.593 7 C 0.554 3.446 8 O -0.558 6.558 9 C -0.259 4.259 10 C 0.502 3.498 11 F -0.182 7.182 12 F -0.166 7.166 13 F -0.175 7.175 14 C -0.118 4.118 15 C -0.104 4.104 16 C 0.112 3.888 17 C -0.140 4.140 18 C 0.178 3.822 19 H 0.044 0.956 20 N -0.729 5.729 21 C -0.231 4.231 22 H 0.075 0.925 23 C -0.072 4.072 24 N -0.969 5.969 25 Si 0.964 3.036 26 H -0.301 1.301 27 H -0.281 1.281 28 H -0.279 1.279 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.117 0.883 40 H 0.101 0.899 41 H 0.079 0.921 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.372 0.628 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 15.782 -11.996 20.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.110 4.110 4 H 0.077 0.923 5 C 0.002 3.998 6 N -0.323 5.323 7 C 0.341 3.659 8 O -0.437 6.437 9 C -0.263 4.263 10 C 0.447 3.553 11 F -0.164 7.164 12 F -0.147 7.147 13 F -0.156 7.156 14 C -0.155 4.155 15 C -0.141 4.141 16 C -0.011 4.011 17 C -0.181 4.181 18 C 0.069 3.931 19 H 0.062 0.938 20 N -0.368 5.368 21 C -0.363 4.363 22 H 0.093 0.907 23 C -0.264 4.264 24 N -0.620 5.620 25 Si 0.794 3.206 26 H -0.227 1.227 27 H -0.208 1.208 28 H -0.205 1.205 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.204 0.796 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.983 15.629 -12.213 20.718 hybrid contribution 0.959 -0.846 0.471 1.363 sum -5.024 14.784 -11.742 19.536 Atomic orbital electron populations 1.21778 0.94823 1.01940 1.01758 1.21358 0.96091 0.95132 1.01984 1.21618 0.95851 0.96509 0.97070 0.92292 1.21749 0.99441 0.81261 0.97372 1.48146 1.09077 1.06375 1.68716 1.19114 0.85733 0.84453 0.76609 1.90689 1.16782 1.86525 1.49686 1.22440 1.10288 0.97495 0.96113 1.19007 0.78034 0.74931 0.83302 1.93211 1.71987 1.95936 1.55221 1.93203 1.83886 1.43348 1.94260 1.93208 1.64104 1.63232 1.95034 1.23509 1.00879 1.01498 0.89592 1.23353 0.97488 0.95660 0.97625 1.22124 0.78467 1.02628 0.97839 1.22488 1.01501 0.97632 0.96485 1.20412 0.92354 0.91345 0.88964 0.93783 1.42535 1.15462 1.64955 1.13809 1.19528 0.92644 1.25872 0.98237 0.90680 1.25411 1.01312 1.03122 0.96560 1.69797 1.36994 1.50105 1.05095 0.85350 0.80687 0.78455 0.76098 1.22716 1.20757 1.20473 0.91816 0.92186 0.93352 0.91899 0.93258 0.89060 0.90119 0.86490 0.84121 0.84460 0.86485 0.88120 0.90230 0.92630 0.91398 0.79629 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.78 9.67 71.98 0.70 -3.08 16 2 C -0.11 -3.35 5.31 30.59 0.16 -3.19 16 3 C -0.09 -2.79 1.92 -10.71 -0.02 -2.82 16 4 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 5 C 0.12 3.34 5.32 86.36 0.46 3.80 16 6 N -0.59 -15.44 2.97 -818.89 -2.43 -17.87 16 7 C 0.55 14.79 6.75 87.66 0.59 15.38 16 8 O -0.56 -18.28 16.38 -3.05 -0.05 -18.33 16 9 C -0.26 -5.15 1.05 -52.93 -0.06 -5.20 16 10 C 0.50 10.09 3.01 71.98 0.22 10.31 16 11 F -0.18 -4.26 17.29 44.97 0.78 -3.48 16 12 F -0.17 -2.83 15.90 44.97 0.72 -2.12 16 13 F -0.17 -3.71 13.66 44.97 0.61 -3.09 16 14 C -0.12 -1.69 8.52 30.62 0.26 -1.43 16 15 C -0.10 -1.52 9.58 30.62 0.29 -1.23 16 16 C 0.11 2.71 4.60 86.36 0.40 3.11 16 17 C -0.14 -4.29 5.66 30.67 0.17 -4.11 16 18 C 0.18 6.35 2.19 45.01 0.10 6.45 16 19 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 20 N -0.73 -33.99 4.33 -322.81 -1.40 -35.39 16 21 C -0.23 -12.04 9.93 84.03 0.83 -11.21 16 22 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 23 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 24 N -0.97 -57.49 13.06 21.65 0.28 -57.21 16 25 Si 0.96 44.77 29.55 68.60 2.03 46.79 16 26 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 H 0.06 1.48 6.70 -2.39 -0.02 1.46 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.90 7.22 -2.39 -0.02 1.89 16 34 H 0.09 2.53 5.75 -2.39 -0.01 2.52 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.14 1.45 7.63 -2.39 -0.02 1.43 16 38 H 0.14 1.41 7.94 -2.39 -0.02 1.39 16 39 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.10 2.08 4.09 -2.38 -0.01 2.07 16 41 H 0.08 1.87 8.00 -2.38 -0.02 1.85 16 42 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.37 19.08 7.51 -92.71 -0.70 18.39 16 45 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -64.01 365.81 5.43 -58.58 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.32 Total: 28.82 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 4.57 Total: 3.30 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -3.55 Total: -110.46 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.05 Total: -18.33 kcal Atomic # 9 Polarization: -10.80 SS G_CDS: 2.11 Total: -8.69 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -64.01 5.43 -58.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920169.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.839 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds