Wall clock time and date at job start Tue Mar 31 2020 17:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.08999 * 109.50187 * 54.99878 * 3 2 1 5 5 C 1.53199 * 109.49646 * 294.93628 * 3 2 1 6 6 N 1.46929 * 108.77120 * 185.44795 * 5 3 2 7 7 C 1.34783 * 120.60415 * 233.57455 * 6 5 3 8 8 O 1.21279 * 119.99590 * 355.61779 * 7 6 5 9 9 C 1.50693 * 119.99859 * 175.61968 * 7 6 5 10 10 C 1.53003 * 115.55212 * 76.53979 * 9 7 6 11 11 F 1.39905 * 109.46965 * 65.33287 * 10 9 7 12 12 F 1.39894 * 109.47400 * 185.33801 * 10 9 7 13 13 F 1.39899 * 109.46961 * 305.33770 * 10 9 7 14 14 C 1.53000 * 117.50164 * 290.86634 * 9 7 6 15 15 C 1.53002 * 117.49964 * 222.20495 * 9 7 6 16 16 C 1.46933 * 118.76821 * 53.55423 * 6 5 3 17 17 C 1.53192 * 108.77302 * 306.41423 * 16 6 5 18 18 C 1.53035 * 109.31679 * 54.63239 * 17 16 6 19 19 H 1.09002 * 109.46254 * 178.61572 * 18 17 16 20 20 N 1.46500 * 109.45035 * 58.64789 * 18 17 16 21 21 C 1.36938 * 120.00176 * 84.93759 * 20 18 17 22 22 H 1.08003 * 119.99408 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00247 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99995 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47058 * 90.00265 * 25 23 21 27 27 H 1.48495 * 109.47232 * 210.00117 * 25 23 21 28 28 H 1.48500 * 109.47073 * 330.00263 * 25 23 21 29 29 H 1.08991 * 109.47119 * 59.99792 * 1 2 3 30 30 H 1.09001 * 109.47069 * 300.00196 * 1 2 3 31 31 H 1.08998 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47195 * 119.99670 * 2 1 3 33 33 H 1.09001 * 109.47069 * 239.99804 * 2 1 3 34 34 H 1.09002 * 109.58211 * 305.20242 * 5 3 2 35 35 H 1.08992 * 109.58782 * 65.62485 * 5 3 2 36 36 H 1.08996 * 117.49816 * 0.02562 * 14 9 7 37 37 H 1.09001 * 117.49839 * 145.02174 * 14 9 7 38 38 H 1.09001 * 117.50225 * 214.98290 * 15 9 7 39 39 H 1.09002 * 117.49736 * 359.97438 * 15 9 7 40 40 H 1.08990 * 109.58542 * 186.62259 * 16 6 5 41 41 H 1.08998 * 109.69868 * 66.26598 * 16 6 5 42 42 H 1.08999 * 109.49629 * 294.68112 * 17 16 6 43 43 H 1.08991 * 109.49838 * 174.58814 * 17 16 6 44 44 H 0.97005 * 119.99892 * 264.94373 * 20 18 17 45 45 H 0.96999 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9820 0.8416 5 6 1.6365 2.1275 -1.3095 6 7 2.2437 3.4648 -1.3502 7 6 1.4841 4.5571 -1.5661 8 8 0.3019 4.4353 -1.8077 9 6 2.1038 5.9294 -1.5072 10 6 2.9358 6.3307 -2.7269 11 9 2.1033 6.4302 -3.8469 12 9 3.5467 7.5665 -2.4887 13 9 3.9179 5.3623 -2.9606 14 6 2.5638 6.4388 -0.1398 15 6 1.3146 7.0311 -0.7969 16 6 3.6941 3.5892 -1.1509 17 6 4.0739 2.8880 0.1571 18 6 3.5655 1.4450 0.1241 19 1 3.8558 0.9365 1.0435 20 7 4.1497 0.7481 -1.0245 21 6 5.3876 0.1723 -0.9188 22 1 5.9331 0.2316 0.0115 23 6 5.9414 -0.4876 -2.0072 24 7 5.2768 -0.5594 -3.1411 25 14 7.6304 -1.2724 -1.8632 26 1 7.4861 -2.6763 -1.4012 27 1 8.2995 -1.2538 -3.1888 28 1 8.4483 -0.5109 -0.8852 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.9930 1.5388 -2.1548 35 1 0.5512 2.2168 -1.3558 36 1 2.4186 5.7811 0.7172 37 1 3.4589 7.0601 -0.1092 38 1 1.3884 8.0418 -1.1984 39 1 0.3469 6.7633 -0.3727 40 1 3.9659 4.6430 -1.0929 41 1 4.2208 3.1212 -1.9826 42 1 3.6204 3.4144 0.9970 43 1 5.1581 2.8893 0.2691 44 1 3.6596 0.6945 -1.8599 45 1 5.6640 -1.0202 -3.9018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037920170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:26 Heat of formation + Delta-G solvation = -148.601033 kcal Electronic energy + Delta-G solvation = -31720.962032 eV Core-core repulsion = 27131.633644 eV Total energy + Delta-G solvation = -4589.328388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.24482 -47.78263 -47.67401 -40.47407 -38.32471 -36.68842 -34.45545 -33.76887 -31.73382 -29.49628 -28.74841 -27.45520 -25.44064 -23.95622 -23.55022 -22.97532 -22.66955 -20.86204 -19.82168 -18.75061 -18.41341 -18.30532 -17.93818 -17.33000 -16.33539 -15.91339 -15.14676 -15.04337 -14.62804 -14.48508 -14.40541 -14.19802 -14.11981 -14.01824 -13.81691 -13.80285 -13.75437 -13.30570 -13.26358 -13.00258 -12.71915 -12.41362 -12.12920 -11.97864 -11.80014 -11.46967 -11.18241 -11.12975 -11.07980 -10.92581 -10.81435 -10.67016 -10.33963 -10.31151 -10.18931 -9.83481 -9.75890 -9.58084 -8.94184 -8.33349 -6.99465 -5.80129 -3.08926 2.14847 2.72140 2.79664 3.10861 3.40808 3.46389 3.48200 3.56330 3.88907 4.08566 4.20775 4.50572 4.55691 4.56220 5.03358 5.11909 5.18502 5.22923 5.30071 5.43895 5.47444 5.51904 5.57368 5.64362 5.64902 5.75466 5.77971 5.86159 6.05294 6.11511 6.16480 6.31170 6.33538 6.38098 6.51735 6.57066 6.68235 6.71826 6.90221 6.94972 7.53604 7.67120 8.14284 8.38035 9.49792 10.05890 10.40668 11.42195 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.004585 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.095463 B = 6105.956075 C = 7418.368213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.118 3.882 6 N -0.585 5.585 7 C 0.553 3.447 8 O -0.532 6.532 9 C -0.234 4.234 10 C 0.496 3.504 11 F -0.172 7.172 12 F -0.178 7.178 13 F -0.165 7.165 14 C -0.132 4.132 15 C -0.117 4.117 16 C 0.110 3.890 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.052 0.948 20 N -0.718 5.718 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 14.176 6.895 17.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.316 5.316 7 C 0.337 3.663 8 O -0.409 6.409 9 C -0.239 4.239 10 C 0.442 3.558 11 F -0.154 7.154 12 F -0.159 7.159 13 F -0.146 7.146 14 C -0.169 4.169 15 C -0.154 4.154 16 C -0.012 4.012 17 C -0.192 4.192 18 C 0.068 3.932 19 H 0.070 0.930 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.579 5.579 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.731 14.011 6.758 17.371 hybrid contribution 1.203 -0.444 -0.600 1.416 sum -6.529 13.567 6.158 16.266 Atomic orbital electron populations 1.21856 0.96806 1.01115 1.01306 1.21418 0.94262 0.95623 1.03495 1.21754 0.97528 0.96207 0.96718 0.91564 1.21792 0.98720 0.81120 0.98756 1.48074 1.08999 1.06172 1.68321 1.18660 0.86125 0.83492 0.77985 1.90693 1.15482 1.85898 1.48825 1.22488 1.08130 0.98569 0.94718 1.19064 0.78361 0.74709 0.83690 1.93228 1.71594 1.95867 1.54685 1.93167 1.84167 1.44224 1.94376 1.93273 1.63694 1.62670 1.94938 1.23316 0.99906 1.02073 0.91637 1.23172 0.97490 0.95651 0.99075 1.22031 0.78514 1.00525 1.00149 1.22564 1.01967 0.99289 0.95341 1.20228 0.89617 0.90678 0.92724 0.93031 1.42471 1.19091 1.63965 1.10526 1.19195 0.93604 1.27095 0.97060 0.91261 1.24698 0.98509 1.01434 0.95994 1.69647 1.38136 1.47945 1.02213 0.86248 0.84263 0.79325 0.76657 1.21835 1.21902 1.20854 0.92796 0.93402 0.93100 0.91923 0.90406 0.90324 0.89462 0.86355 0.86356 0.86713 0.86230 0.90883 0.89188 0.93387 0.90586 0.78103 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.69 5.19 -26.73 -0.14 -1.83 16 3 C -0.10 -1.58 2.14 -90.50 -0.19 -1.78 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.94 5.02 -3.71 -0.02 1.93 16 6 N -0.59 -9.34 2.97 -172.77 -0.51 -9.85 16 7 C 0.55 8.71 6.75 -10.99 -0.07 8.64 16 8 O -0.53 -9.79 16.38 5.56 0.09 -9.70 16 9 C -0.23 -2.91 1.05 -155.66 -0.16 -3.08 16 10 C 0.50 6.64 3.01 37.16 0.11 6.75 16 11 F -0.17 -2.56 17.29 2.25 0.04 -2.52 16 12 F -0.18 -2.07 15.90 2.25 0.04 -2.04 16 13 F -0.16 -2.49 13.66 2.25 0.03 -2.46 16 14 C -0.13 -1.18 8.52 -26.69 -0.23 -1.40 16 15 C -0.12 -1.08 9.58 -26.69 -0.26 -1.33 16 16 C 0.11 1.75 4.34 -3.71 -0.02 1.73 16 17 C -0.15 -2.36 5.78 -26.61 -0.15 -2.52 16 18 C 0.18 3.17 2.53 -67.89 -0.17 3.00 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -16.10 3.72 -53.38 -0.20 -16.30 16 21 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 22 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -26.94 13.06 55.49 0.72 -26.21 16 25 Si 0.90 21.65 29.55 -169.99 -5.02 16.62 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.05 0.71 6.70 -51.93 -0.35 0.37 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 34 H 0.08 1.47 6.64 -51.93 -0.34 1.12 16 35 H 0.09 1.43 5.75 -51.93 -0.30 1.13 16 36 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.12 0.88 7.63 -51.93 -0.40 0.48 16 38 H 0.11 0.87 7.94 -51.93 -0.41 0.45 16 39 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.01 4.09 -51.93 -0.21 0.80 16 41 H 0.09 1.75 7.60 -51.93 -0.39 1.36 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.38 9.33 5.94 -40.82 -0.24 9.09 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -29.49 362.20 -6.94 -36.43 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.40 Total: 8.74 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -1.19 Total: 1.84 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: 0.01 Total: -52.37 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.11 Total: -7.02 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.49 -6.94 -36.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.173 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds