Wall clock time and date at job start Tue Mar 31 2020 17:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 H 1.08999 * 109.50187 * 54.99878 * 3 2 1 5 5 C 1.53199 * 109.49646 * 294.93628 * 3 2 1 6 6 N 1.46929 * 108.77120 * 185.44795 * 5 3 2 7 7 C 1.34783 * 120.60415 * 233.57455 * 6 5 3 8 8 O 1.21279 * 119.99590 * 355.61779 * 7 6 5 9 9 C 1.50693 * 119.99859 * 175.61968 * 7 6 5 10 10 C 1.53003 * 115.55212 * 76.53979 * 9 7 6 11 11 F 1.39905 * 109.46965 * 65.33287 * 10 9 7 12 12 F 1.39894 * 109.47400 * 185.33801 * 10 9 7 13 13 F 1.39899 * 109.46961 * 305.33770 * 10 9 7 14 14 C 1.53000 * 117.50164 * 290.86634 * 9 7 6 15 15 C 1.53002 * 117.49964 * 222.20495 * 9 7 6 16 16 C 1.46933 * 118.76821 * 53.55423 * 6 5 3 17 17 C 1.53192 * 108.77302 * 306.41423 * 16 6 5 18 18 C 1.53035 * 109.31679 * 54.63239 * 17 16 6 19 19 H 1.09002 * 109.46254 * 178.61572 * 18 17 16 20 20 N 1.46500 * 109.45035 * 58.64789 * 18 17 16 21 21 C 1.36938 * 120.00176 * 84.93759 * 20 18 17 22 22 H 1.08003 * 119.99408 * 0.02562 * 21 20 18 23 23 C 1.38807 * 120.00247 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99995 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47058 * 90.00265 * 25 23 21 27 27 H 1.48495 * 109.47232 * 210.00117 * 25 23 21 28 28 H 1.48500 * 109.47073 * 330.00263 * 25 23 21 29 29 H 1.08991 * 109.47119 * 59.99792 * 1 2 3 30 30 H 1.09001 * 109.47069 * 300.00196 * 1 2 3 31 31 H 1.08998 * 109.47355 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47195 * 119.99670 * 2 1 3 33 33 H 1.09001 * 109.47069 * 239.99804 * 2 1 3 34 34 H 1.09002 * 109.58211 * 305.20242 * 5 3 2 35 35 H 1.08992 * 109.58782 * 65.62485 * 5 3 2 36 36 H 1.08996 * 117.49816 * 0.02562 * 14 9 7 37 37 H 1.09001 * 117.49839 * 145.02174 * 14 9 7 38 38 H 1.09001 * 117.50225 * 214.98290 * 15 9 7 39 39 H 1.09002 * 117.49736 * 359.97438 * 15 9 7 40 40 H 1.08990 * 109.58542 * 186.62259 * 16 6 5 41 41 H 1.08998 * 109.69868 * 66.26598 * 16 6 5 42 42 H 1.08999 * 109.49629 * 294.68112 * 17 16 6 43 43 H 1.08991 * 109.49838 * 174.58814 * 17 16 6 44 44 H 0.97005 * 119.99892 * 264.94373 * 20 18 17 45 45 H 0.96999 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6057 1.9820 0.8416 5 6 1.6365 2.1275 -1.3095 6 7 2.2437 3.4648 -1.3502 7 6 1.4841 4.5571 -1.5661 8 8 0.3019 4.4353 -1.8077 9 6 2.1038 5.9294 -1.5072 10 6 2.9358 6.3307 -2.7269 11 9 2.1033 6.4302 -3.8469 12 9 3.5467 7.5665 -2.4887 13 9 3.9179 5.3623 -2.9606 14 6 2.5638 6.4388 -0.1398 15 6 1.3146 7.0311 -0.7969 16 6 3.6941 3.5892 -1.1509 17 6 4.0739 2.8880 0.1571 18 6 3.5655 1.4450 0.1241 19 1 3.8558 0.9365 1.0435 20 7 4.1497 0.7481 -1.0245 21 6 5.3876 0.1723 -0.9188 22 1 5.9331 0.2316 0.0115 23 6 5.9414 -0.4876 -2.0072 24 7 5.2768 -0.5594 -3.1411 25 14 7.6304 -1.2724 -1.8632 26 1 7.4861 -2.6763 -1.4012 27 1 8.2995 -1.2538 -3.1888 28 1 8.4483 -0.5109 -0.8852 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.9930 1.5388 -2.1548 35 1 0.5512 2.2168 -1.3558 36 1 2.4186 5.7811 0.7172 37 1 3.4589 7.0601 -0.1092 38 1 1.3884 8.0418 -1.1984 39 1 0.3469 6.7633 -0.3727 40 1 3.9659 4.6430 -1.0929 41 1 4.2208 3.1212 -1.9826 42 1 3.6204 3.4144 0.9970 43 1 5.1581 2.8893 0.2691 44 1 3.6596 0.6945 -1.8599 45 1 5.6640 -1.0202 -3.9018 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037920170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:26 Heat of formation + Delta-G solvation = -165.014039 kcal Electronic energy + Delta-G solvation = -31721.673753 eV Core-core repulsion = 27131.633644 eV Total energy + Delta-G solvation = -4590.040109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.30410 -48.82959 -48.77260 -41.69758 -39.59634 -37.71347 -35.91017 -35.30393 -33.41660 -31.03708 -30.14207 -28.48741 -26.79048 -25.52254 -25.11064 -23.84411 -23.65537 -22.16339 -20.97727 -19.97127 -19.49022 -19.47197 -19.24067 -19.09483 -17.57647 -16.99049 -16.63483 -16.27056 -16.07038 -15.76891 -15.64184 -15.45850 -15.31470 -15.18733 -15.04129 -14.94410 -14.80113 -14.76135 -14.58589 -14.30679 -14.10483 -13.72268 -13.32972 -13.06229 -12.94613 -12.83876 -12.65215 -12.60860 -12.34275 -12.18745 -12.10838 -11.95989 -11.85418 -11.80550 -11.57120 -11.44633 -11.12470 -11.04023 -10.77847 -9.69870 -8.90373 -7.87310 -5.13241 1.01879 1.49981 1.50226 1.58079 1.66924 1.73945 2.15168 2.59258 2.60950 2.83783 3.15953 3.20659 3.46958 3.57309 3.66074 3.80351 3.86841 4.02218 4.08634 4.23998 4.35469 4.38864 4.45191 4.46870 4.55683 4.61676 4.68351 4.79136 4.85289 4.89040 4.99912 5.00295 5.05194 5.18763 5.21449 5.24970 5.31021 5.40707 5.52289 5.61478 5.65451 6.27852 6.34433 6.89542 7.41879 8.19107 8.41172 9.36233 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012224 B = 0.004585 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.095463 B = 6105.956075 C = 7418.368213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.089 4.089 4 H 0.093 0.907 5 C 0.123 3.877 6 N -0.587 5.587 7 C 0.552 3.448 8 O -0.562 6.562 9 C -0.263 4.263 10 C 0.496 3.504 11 F -0.186 7.186 12 F -0.164 7.164 13 F -0.180 7.180 14 C -0.110 4.110 15 C -0.102 4.102 16 C 0.120 3.880 17 C -0.142 4.142 18 C 0.170 3.830 19 H 0.052 0.948 20 N -0.726 5.726 21 C -0.223 4.223 22 H 0.078 0.922 23 C -0.075 4.075 24 N -0.971 5.971 25 Si 0.962 3.038 26 H -0.293 1.293 27 H -0.305 1.305 28 H -0.268 1.268 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.140 0.860 38 H 0.134 0.866 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 16.245 9.717 20.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.109 4.109 4 H 0.111 0.889 5 C 0.000 4.000 6 N -0.317 5.317 7 C 0.339 3.661 8 O -0.442 6.442 9 C -0.268 4.268 10 C 0.441 3.559 11 F -0.168 7.168 12 F -0.146 7.146 13 F -0.162 7.162 14 C -0.147 4.147 15 C -0.139 4.139 16 C -0.002 4.002 17 C -0.182 4.182 18 C 0.061 3.939 19 H 0.070 0.930 20 N -0.366 5.366 21 C -0.355 4.355 22 H 0.096 0.904 23 C -0.267 4.267 24 N -0.623 5.623 25 Si 0.793 3.207 26 H -0.220 1.220 27 H -0.232 1.232 28 H -0.193 1.193 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.140 0.860 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.901 16.114 9.643 20.373 hybrid contribution 1.190 -1.029 -1.441 2.133 sum -6.711 15.085 8.202 18.436 Atomic orbital electron populations 1.21787 0.94725 1.01920 1.01912 1.21345 0.96073 0.95209 1.01787 1.21660 0.95877 0.96429 0.96895 0.88868 1.21629 0.98674 0.81483 0.98183 1.48103 1.09005 1.06141 1.68433 1.19150 0.85749 0.84514 0.76688 1.90671 1.16941 1.86626 1.49919 1.22413 1.10679 0.97490 0.96192 1.19219 0.78110 0.74883 0.83689 1.93200 1.71966 1.95939 1.55649 1.93187 1.83915 1.43230 1.94239 1.93245 1.64395 1.63453 1.95074 1.23581 1.00551 1.01239 0.89310 1.23371 0.97759 0.95324 0.97415 1.21869 0.78085 1.01594 0.98673 1.22445 1.01614 0.97733 0.96449 1.20503 0.91025 0.91539 0.90796 0.92967 1.42614 1.18267 1.64296 1.11458 1.19578 0.94292 1.24889 0.96709 0.90444 1.25380 1.01775 1.03392 0.96108 1.69812 1.39653 1.49944 1.02863 0.85297 0.80922 0.78416 0.76082 1.22035 1.23187 1.19319 0.93387 0.91469 0.92308 0.91642 0.94022 0.93613 0.89275 0.85205 0.84244 0.84772 0.86049 0.88377 0.93457 0.89561 0.91415 0.79537 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.67 71.98 0.70 -2.93 16 2 C -0.11 -3.22 5.19 30.59 0.16 -3.06 16 3 C -0.09 -2.65 2.14 -10.71 -0.02 -2.68 16 4 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 5 C 0.12 4.08 5.02 86.36 0.43 4.51 16 6 N -0.59 -18.36 2.97 -818.89 -2.43 -20.79 16 7 C 0.55 16.78 6.75 87.65 0.59 17.37 16 8 O -0.56 -20.35 16.38 -3.02 -0.05 -20.40 16 9 C -0.26 -5.93 1.05 -52.93 -0.06 -5.99 16 10 C 0.50 12.57 3.01 71.98 0.22 12.79 16 11 F -0.19 -5.46 17.29 44.97 0.78 -4.68 16 12 F -0.16 -3.42 15.90 44.97 0.72 -2.70 16 13 F -0.18 -5.41 13.66 44.97 0.61 -4.80 16 14 C -0.11 -1.49 8.52 30.62 0.26 -1.23 16 15 C -0.10 -1.52 9.58 30.62 0.29 -1.22 16 16 C 0.12 3.71 4.34 86.36 0.37 4.08 16 17 C -0.14 -4.14 5.78 30.67 0.18 -3.96 16 18 C 0.17 5.87 2.53 45.02 0.11 5.98 16 19 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 20 N -0.73 -33.15 3.72 -322.81 -1.20 -34.35 16 21 C -0.22 -11.48 9.93 84.03 0.83 -10.64 16 22 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 24 N -0.97 -58.48 13.06 21.65 0.28 -58.20 16 25 Si 0.96 45.26 29.55 68.60 2.03 47.29 16 26 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 27 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 29 H 0.05 1.24 6.70 -2.39 -0.02 1.23 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.04 1.56 7.70 -2.39 -0.02 1.55 16 34 H 0.05 1.82 6.64 -2.39 -0.02 1.81 16 35 H 0.09 2.93 5.75 -2.39 -0.01 2.92 16 36 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.14 1.35 7.63 -2.39 -0.02 1.34 16 38 H 0.13 1.49 7.94 -2.39 -0.02 1.47 16 39 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.10 2.53 4.09 -2.39 -0.01 2.52 16 41 H 0.05 1.89 7.60 -2.39 -0.02 1.87 16 42 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.37 18.94 5.94 -92.70 -0.55 18.39 16 45 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -66.40 362.20 5.74 -60.65 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.47 Total: 28.62 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 4.54 Total: 9.35 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.35 Total: -113.34 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.05 Total: -20.40 kcal Atomic # 9 Polarization: -14.29 SS G_CDS: 2.11 Total: -12.18 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -66.40 5.74 -60.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.361 kcal (2) G-P(sol) polarization free energy of solvation -66.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds