Wall clock time and date at job start Tue Mar 31 2020 17:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 109.46751 * 2 1 4 4 H 1.08998 * 109.52580 * 305.07746 * 3 2 1 5 5 C 1.53192 * 109.49639 * 65.16145 * 3 2 1 6 6 N 1.46926 * 108.77431 * 174.58144 * 5 3 2 7 7 C 1.34777 * 120.62801 * 126.41276 * 6 5 3 8 8 O 1.21285 * 120.00319 * 355.92806 * 7 6 5 9 9 C 1.50696 * 120.00297 * 175.92654 * 7 6 5 10 10 C 1.53004 * 115.54747 * 81.12461 * 9 7 6 11 11 F 1.39893 * 109.47468 * 66.72934 * 10 9 7 12 12 F 1.39906 * 109.47046 * 186.73403 * 10 9 7 13 13 F 1.39908 * 109.46995 * 306.73087 * 10 9 7 14 14 C 1.52994 * 117.49841 * 295.45826 * 9 7 6 15 15 C 1.52995 * 117.50154 * 226.79618 * 9 7 6 16 16 C 1.46924 * 118.74016 * 306.39273 * 6 5 3 17 17 C 1.53183 * 108.77512 * 53.60692 * 16 6 5 18 18 C 1.53038 * 109.31512 * 305.36354 * 17 16 6 19 19 H 1.09002 * 109.46008 * 301.36061 * 18 17 16 20 20 N 1.46499 * 109.46042 * 181.38556 * 18 17 16 21 21 C 1.36937 * 119.99845 * 85.00420 * 20 18 17 22 22 H 1.07996 * 120.00336 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99837 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00333 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99915 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47124 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47073 * 240.00134 * 25 23 21 28 28 H 1.48500 * 109.47164 * 120.00042 * 25 23 21 29 29 H 1.09009 * 109.46849 * 60.00012 * 1 2 3 30 30 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47503 * 300.00425 * 1 2 3 32 32 H 1.08999 * 109.47503 * 240.00356 * 2 1 3 33 33 H 1.08998 * 109.47012 * 119.99507 * 2 1 3 34 34 H 1.09009 * 109.58785 * 54.79598 * 5 3 2 35 35 H 1.08999 * 109.58600 * 294.37386 * 5 3 2 36 36 H 1.08997 * 117.50283 * 359.97438 * 14 9 7 37 37 H 1.09004 * 117.50059 * 145.01636 * 14 9 7 38 38 H 1.09003 * 117.49853 * 214.97827 * 15 9 7 39 39 H 1.08998 * 117.50166 * 359.97438 * 15 9 7 40 40 H 1.08998 * 109.58405 * 293.81924 * 16 6 5 41 41 H 1.09006 * 109.58278 * 173.39426 * 16 6 5 42 42 H 1.09006 * 109.49950 * 185.41352 * 17 16 6 43 43 H 1.09004 * 109.52597 * 65.33573 * 17 16 6 44 44 H 0.96998 * 120.00549 * 264.99607 * 20 18 17 45 45 H 0.97005 * 119.99831 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9829 -0.8407 5 6 1.6384 2.1268 1.3105 6 7 2.2450 3.4644 1.3508 7 6 1.4856 4.5565 1.5682 8 8 0.2810 4.4492 1.6593 9 6 2.1332 5.9110 1.6982 10 6 2.4900 6.6010 0.3800 11 9 1.3164 6.9288 -0.3073 12 9 3.2161 7.7670 0.6456 13 9 3.2637 5.7381 -0.4036 14 6 3.0674 6.1360 2.8887 15 6 1.6877 6.7983 2.8621 16 6 3.6951 3.5889 1.1499 17 6 4.0735 2.8883 -0.1587 18 6 3.5652 1.4452 -0.1256 19 1 4.0006 0.9263 0.7284 20 7 3.9542 0.7623 -1.3619 21 6 5.1918 0.1853 -1.4651 22 1 5.8813 0.2341 -0.6353 23 6 5.5602 -0.4622 -2.6364 24 7 4.7199 -0.5222 -3.6475 25 14 7.2487 -1.2487 -2.7774 26 1 7.9980 -1.0426 -1.5119 27 1 7.9934 -0.6242 -3.9002 28 1 7.0974 -2.7038 -3.0324 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.9964 1.5377 2.1550 35 1 0.5531 2.2161 1.3585 36 1 3.2133 5.3045 3.5783 37 1 3.9359 6.7760 2.7331 38 1 1.6490 7.8738 2.6889 39 1 0.9258 6.4027 3.5337 40 1 4.2207 3.1190 1.9812 41 1 3.9668 4.6430 1.0920 42 1 5.1577 2.8896 -0.2717 43 1 3.6196 3.4148 -0.9983 44 1 3.3351 0.7186 -2.1074 45 1 3.8431 -0.1135 -3.5744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037920171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:29 Heat of formation + Delta-G solvation = -150.477653 kcal Electronic energy + Delta-G solvation = -31414.247850 eV Core-core repulsion = 26824.838086 eV Total energy + Delta-G solvation = -4589.409764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.36689 -47.90457 -47.79688 -40.63791 -38.36872 -36.86898 -34.93375 -33.96436 -31.86802 -29.50258 -28.90002 -27.54254 -25.35725 -23.98583 -23.44680 -23.03494 -22.39301 -20.95362 -19.97507 -19.59990 -18.64737 -18.52443 -18.05130 -17.30133 -16.63990 -16.15241 -15.29402 -15.05693 -14.97330 -14.69579 -14.38869 -14.33234 -14.27061 -14.21267 -13.96512 -13.81304 -13.58980 -13.44059 -13.38884 -13.24183 -12.84620 -12.66682 -12.15561 -12.11716 -11.94217 -11.71423 -11.41290 -11.28437 -11.20697 -10.90033 -10.73349 -10.59041 -10.35031 -10.28110 -10.08583 -9.98198 -9.86639 -9.19171 -8.91433 -8.64700 -7.04395 -6.10997 -3.11247 1.95472 2.57667 2.60285 2.89278 3.42689 3.50073 3.56606 3.65508 3.73170 3.94443 4.00810 4.36209 4.40029 4.64278 4.87407 4.96667 5.04123 5.09488 5.14623 5.26756 5.29660 5.35349 5.47673 5.49431 5.53814 5.57133 5.64153 5.75520 5.91112 6.00311 6.04754 6.16972 6.25031 6.27074 6.34533 6.42791 6.56816 6.72700 6.81607 6.97263 7.25955 7.79776 7.91656 8.74413 9.20962 10.07457 10.22847 11.37240 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.003884 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.371933 B = 7207.053015 C = 8254.823453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.107 4.107 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.555 3.445 8 O -0.525 6.525 9 C -0.237 4.237 10 C 0.497 3.503 11 F -0.171 7.171 12 F -0.177 7.177 13 F -0.164 7.164 14 C -0.135 4.135 15 C -0.115 4.115 16 C 0.101 3.899 17 C -0.149 4.149 18 C 0.189 3.811 19 H 0.049 0.951 20 N -0.731 5.731 21 C -0.330 4.330 22 H 0.065 0.935 23 C -0.044 4.044 24 N -0.944 5.944 25 Si 1.083 2.917 26 H -0.295 1.295 27 H -0.294 1.294 28 H -0.294 1.294 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.062 0.938 44 H 0.367 0.633 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.064 13.941 15.168 21.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.127 4.127 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.340 3.660 8 O -0.402 6.402 9 C -0.241 4.241 10 C 0.442 3.558 11 F -0.152 7.152 12 F -0.158 7.158 13 F -0.145 7.145 14 C -0.172 4.172 15 C -0.153 4.153 16 C -0.022 4.022 17 C -0.190 4.190 18 C 0.079 3.921 19 H 0.067 0.933 20 N -0.373 5.373 21 C -0.461 4.461 22 H 0.083 0.917 23 C -0.241 4.241 24 N -0.589 5.589 25 Si 0.915 3.085 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.200 0.800 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.500 12.993 14.338 19.866 hybrid contribution -0.955 1.049 0.357 1.463 sum -5.455 14.042 14.695 21.045 Atomic orbital electron populations 1.21851 0.96637 1.01170 1.01389 1.21436 0.94488 0.95521 1.03394 1.21815 0.97850 0.96303 0.96693 0.91237 1.21832 0.99484 0.80832 0.98111 1.48096 1.08953 1.06415 1.68800 1.18693 0.86368 0.83394 0.77526 1.90713 1.13531 1.85482 1.50441 1.22490 1.12271 0.98996 0.90367 1.19019 0.74826 0.76734 0.85202 1.93233 1.47897 1.92779 1.81340 1.93179 1.78352 1.50367 1.93896 1.93255 1.75453 1.69189 1.76598 1.23352 0.94926 1.03827 0.95046 1.23182 0.98312 0.98792 0.94971 1.22089 0.78784 1.01933 0.99402 1.22649 1.02345 0.98878 0.95141 1.20122 0.90501 0.90539 0.90938 0.93301 1.42414 1.16578 1.65614 1.12672 1.20062 0.92459 1.31949 1.01601 0.91748 1.25708 1.05765 1.00261 0.92403 1.70813 1.08380 1.47586 1.32168 0.83178 0.74343 0.76246 0.74766 1.22173 1.22098 1.22080 0.92974 0.93021 0.93129 0.90148 0.92281 0.91176 0.88945 0.86335 0.86200 0.86567 0.86212 0.91308 0.90028 0.90445 0.91970 0.79973 0.93293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.67 37.16 0.36 -1.72 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.11 -1.73 1.92 -90.49 -0.17 -1.90 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.68 5.33 -3.71 -0.02 1.66 16 6 N -0.59 -8.12 2.97 -172.77 -0.51 -8.64 16 7 C 0.56 7.82 6.68 -10.99 -0.07 7.75 16 8 O -0.53 -8.92 16.42 5.55 0.09 -8.83 16 9 C -0.24 -2.60 1.04 -155.67 -0.16 -2.76 16 10 C 0.50 6.09 3.00 37.16 0.11 6.20 16 11 F -0.17 -2.39 17.30 2.25 0.04 -2.35 16 12 F -0.18 -1.88 15.91 2.25 0.04 -1.85 16 13 F -0.16 -2.29 13.18 2.25 0.03 -2.26 16 14 C -0.13 -0.98 8.39 -26.70 -0.22 -1.20 16 15 C -0.12 -0.91 9.63 -26.70 -0.26 -1.17 16 16 C 0.10 1.31 5.14 -3.72 -0.02 1.29 16 17 C -0.15 -2.53 5.40 -26.62 -0.14 -2.67 16 18 C 0.19 3.55 2.19 -67.89 -0.15 3.40 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.73 -17.35 4.33 -53.39 -0.23 -17.58 16 21 C -0.33 -8.85 9.93 -15.06 -0.15 -9.00 16 22 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 23 C -0.04 -1.23 5.50 -17.43 -0.10 -1.33 16 24 N -0.94 -28.70 13.70 55.49 0.76 -27.94 16 25 Si 1.08 25.57 29.92 -169.99 -5.09 20.48 16 26 H -0.30 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.08 1.53 7.22 -51.93 -0.37 1.15 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.09 1.35 5.72 -51.93 -0.30 1.05 16 36 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.12 0.71 7.59 -51.93 -0.39 0.31 16 38 H 0.12 0.75 7.98 -51.93 -0.41 0.33 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.96 3.89 -51.93 -0.20 0.75 16 42 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 43 H 0.06 1.16 7.32 -51.93 -0.38 0.78 16 44 H 0.37 9.21 6.35 -40.82 -0.26 8.95 16 45 H 0.26 7.68 6.77 -40.82 -0.28 7.41 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -31.78 362.93 -6.92 -38.70 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.38 Total: 8.15 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.14 Total: -3.35 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.02 Total: -54.16 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.10 Total: -6.46 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.09 Total: 20.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.78 -6.92 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.777 kcal (2) G-P(sol) polarization free energy of solvation -31.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds