Wall clock time and date at job start Tue Mar 31 2020 17:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 109.46751 * 2 1 4 4 H 1.08998 * 109.52580 * 305.07746 * 3 2 1 5 5 C 1.53192 * 109.49639 * 65.16145 * 3 2 1 6 6 N 1.46926 * 108.77431 * 174.58144 * 5 3 2 7 7 C 1.34777 * 120.62801 * 126.41276 * 6 5 3 8 8 O 1.21285 * 120.00319 * 355.92806 * 7 6 5 9 9 C 1.50696 * 120.00297 * 175.92654 * 7 6 5 10 10 C 1.53004 * 115.54747 * 81.12461 * 9 7 6 11 11 F 1.39893 * 109.47468 * 66.72934 * 10 9 7 12 12 F 1.39906 * 109.47046 * 186.73403 * 10 9 7 13 13 F 1.39908 * 109.46995 * 306.73087 * 10 9 7 14 14 C 1.52994 * 117.49841 * 295.45826 * 9 7 6 15 15 C 1.52995 * 117.50154 * 226.79618 * 9 7 6 16 16 C 1.46924 * 118.74016 * 306.39273 * 6 5 3 17 17 C 1.53183 * 108.77512 * 53.60692 * 16 6 5 18 18 C 1.53038 * 109.31512 * 305.36354 * 17 16 6 19 19 H 1.09002 * 109.46008 * 301.36061 * 18 17 16 20 20 N 1.46499 * 109.46042 * 181.38556 * 18 17 16 21 21 C 1.36937 * 119.99845 * 85.00420 * 20 18 17 22 22 H 1.07996 * 120.00336 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99837 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00333 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99915 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.47124 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47073 * 240.00134 * 25 23 21 28 28 H 1.48500 * 109.47164 * 120.00042 * 25 23 21 29 29 H 1.09009 * 109.46849 * 60.00012 * 1 2 3 30 30 H 1.08999 * 109.46834 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47503 * 300.00425 * 1 2 3 32 32 H 1.08999 * 109.47503 * 240.00356 * 2 1 3 33 33 H 1.08998 * 109.47012 * 119.99507 * 2 1 3 34 34 H 1.09009 * 109.58785 * 54.79598 * 5 3 2 35 35 H 1.08999 * 109.58600 * 294.37386 * 5 3 2 36 36 H 1.08997 * 117.50283 * 359.97438 * 14 9 7 37 37 H 1.09004 * 117.50059 * 145.01636 * 14 9 7 38 38 H 1.09003 * 117.49853 * 214.97827 * 15 9 7 39 39 H 1.08998 * 117.50166 * 359.97438 * 15 9 7 40 40 H 1.08998 * 109.58405 * 293.81924 * 16 6 5 41 41 H 1.09006 * 109.58278 * 173.39426 * 16 6 5 42 42 H 1.09006 * 109.49950 * 185.41352 * 17 16 6 43 43 H 1.09004 * 109.52597 * 65.33573 * 17 16 6 44 44 H 0.96998 * 120.00549 * 264.99607 * 20 18 17 45 45 H 0.97005 * 119.99831 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9829 -0.8407 5 6 1.6384 2.1268 1.3105 6 7 2.2450 3.4644 1.3508 7 6 1.4856 4.5565 1.5682 8 8 0.2810 4.4492 1.6593 9 6 2.1332 5.9110 1.6982 10 6 2.4900 6.6010 0.3800 11 9 1.3164 6.9288 -0.3073 12 9 3.2161 7.7670 0.6456 13 9 3.2637 5.7381 -0.4036 14 6 3.0674 6.1360 2.8887 15 6 1.6877 6.7983 2.8621 16 6 3.6951 3.5889 1.1499 17 6 4.0735 2.8883 -0.1587 18 6 3.5652 1.4452 -0.1256 19 1 4.0006 0.9263 0.7284 20 7 3.9542 0.7623 -1.3619 21 6 5.1918 0.1853 -1.4651 22 1 5.8813 0.2341 -0.6353 23 6 5.5602 -0.4622 -2.6364 24 7 4.7199 -0.5222 -3.6475 25 14 7.2487 -1.2487 -2.7774 26 1 7.9980 -1.0426 -1.5119 27 1 7.9934 -0.6242 -3.9002 28 1 7.0974 -2.7038 -3.0324 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.9964 1.5377 2.1550 35 1 0.5531 2.2161 1.3585 36 1 3.2133 5.3045 3.5783 37 1 3.9359 6.7760 2.7331 38 1 1.6490 7.8738 2.6889 39 1 0.9258 6.4027 3.5337 40 1 4.2207 3.1190 1.9812 41 1 3.9668 4.6430 1.0920 42 1 5.1577 2.8896 -0.2717 43 1 3.6196 3.4148 -0.9983 44 1 3.3351 0.7186 -2.1074 45 1 3.8431 -0.1135 -3.5744 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037920171.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:28 Heat of formation + Delta-G solvation = -169.213185 kcal Electronic energy + Delta-G solvation = -31415.060283 eV Core-core repulsion = 26824.838086 eV Total energy + Delta-G solvation = -4590.222198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.33241 -48.85951 -48.80358 -41.72411 -39.61318 -37.77631 -36.48066 -35.43527 -33.54947 -30.99603 -30.26204 -28.48537 -26.76459 -25.39387 -24.94678 -23.66004 -23.64073 -22.31258 -21.22128 -20.71653 -19.63804 -19.50049 -19.31810 -19.05527 -17.75652 -17.11764 -16.72894 -16.38502 -16.07503 -15.84600 -15.68741 -15.46783 -15.37865 -15.23641 -15.20934 -15.03659 -14.88657 -14.67898 -14.65160 -14.55617 -14.02988 -13.72683 -13.37939 -13.27101 -13.11947 -12.76960 -12.64369 -12.58850 -12.42934 -12.16448 -12.00409 -11.94304 -11.85184 -11.72016 -11.64624 -11.47109 -11.13017 -11.06531 -10.81936 -9.83828 -9.06758 -8.33747 -5.27382 0.94774 1.59476 1.63632 1.67978 1.70762 1.81473 2.09728 2.56492 2.73463 2.79597 3.11258 3.16494 3.44504 3.53255 3.61912 3.63978 3.68591 3.88280 3.95259 4.12637 4.22982 4.29276 4.36608 4.39258 4.53688 4.54037 4.62001 4.68756 4.71787 4.77646 4.80878 4.90180 4.95155 4.97281 5.06086 5.18591 5.26225 5.35517 5.44304 5.53925 5.65626 6.15865 6.52841 6.83171 7.12904 8.02922 8.17006 9.17943 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.003884 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.371933 B = 7207.053015 C = 8254.823453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.096 4.096 4 H 0.045 0.955 5 C 0.125 3.875 6 N -0.593 5.593 7 C 0.555 3.445 8 O -0.559 6.559 9 C -0.264 4.264 10 C 0.495 3.505 11 F -0.187 7.187 12 F -0.165 7.165 13 F -0.179 7.179 14 C -0.110 4.110 15 C -0.105 4.105 16 C 0.111 3.889 17 C -0.140 4.140 18 C 0.185 3.815 19 H 0.052 0.948 20 N -0.743 5.743 21 C -0.317 4.317 22 H 0.070 0.930 23 C -0.107 4.107 24 N -0.981 5.981 25 Si 1.129 2.871 26 H -0.268 1.268 27 H -0.296 1.296 28 H -0.295 1.295 29 H 0.042 0.958 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.355 0.645 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.148 15.035 18.273 24.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.116 4.116 4 H 0.063 0.937 5 C 0.003 3.997 6 N -0.323 5.323 7 C 0.341 3.659 8 O -0.438 6.438 9 C -0.268 4.268 10 C 0.440 3.560 11 F -0.168 7.168 12 F -0.146 7.146 13 F -0.160 7.160 14 C -0.146 4.146 15 C -0.142 4.142 16 C -0.012 4.012 17 C -0.181 4.181 18 C 0.076 3.924 19 H 0.070 0.930 20 N -0.384 5.384 21 C -0.449 4.449 22 H 0.088 0.912 23 C -0.298 4.298 24 N -0.629 5.629 25 Si 0.955 3.045 26 H -0.192 1.192 27 H -0.224 1.224 28 H -0.222 1.222 29 H 0.061 0.939 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.057 0.943 44 H 0.187 0.813 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.582 14.125 17.503 22.775 hybrid contribution -1.289 0.772 -0.574 1.608 sum -4.870 14.897 16.929 23.070 Atomic orbital electron populations 1.21786 0.94700 1.02076 1.01761 1.21343 0.96171 0.94861 1.01953 1.21662 0.95823 0.96655 0.97421 0.93653 1.21750 0.99526 0.81302 0.97125 1.48145 1.09205 1.06373 1.68612 1.19137 0.85969 0.84339 0.76415 1.90691 1.15045 1.86188 1.51844 1.22414 1.15797 0.97836 0.90790 1.19224 0.74299 0.77015 0.85412 1.93201 1.48822 1.92929 1.81877 1.93194 1.77995 1.49690 1.93759 1.93225 1.75808 1.69739 1.77233 1.23618 0.95043 1.04010 0.91958 1.23374 0.98956 0.99256 0.92591 1.22058 0.78554 1.02805 0.97747 1.22436 1.01161 0.97610 0.96899 1.20363 0.92241 0.91018 0.88733 0.93026 1.42622 1.15601 1.66178 1.13998 1.20394 0.93252 1.30066 1.01184 0.91166 1.27054 1.08529 1.01626 0.92550 1.70932 1.08519 1.49894 1.33603 0.82590 0.70998 0.75155 0.75768 1.19236 1.22375 1.22222 0.93901 0.91878 0.91405 0.93958 0.91201 0.88821 0.89167 0.84848 0.84252 0.84989 0.85995 0.88507 0.88234 0.91681 0.94307 0.81329 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.67 71.98 0.70 -3.20 16 2 C -0.11 -3.35 5.31 30.60 0.16 -3.19 16 3 C -0.10 -3.11 1.92 -10.71 -0.02 -3.13 16 4 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 5 C 0.13 3.32 5.33 86.36 0.46 3.78 16 6 N -0.59 -15.17 2.97 -818.91 -2.43 -17.60 16 7 C 0.55 14.69 6.68 87.66 0.59 15.28 16 8 O -0.56 -18.43 16.42 -3.05 -0.05 -18.48 16 9 C -0.26 -5.16 1.04 -52.93 -0.05 -5.21 16 10 C 0.50 11.42 3.00 71.98 0.22 11.64 16 11 F -0.19 -5.16 17.30 44.97 0.78 -4.38 16 12 F -0.17 -3.14 15.91 44.97 0.72 -2.43 16 13 F -0.18 -4.87 13.18 44.97 0.59 -4.28 16 14 C -0.11 -1.14 8.39 30.62 0.26 -0.89 16 15 C -0.10 -1.31 9.63 30.62 0.29 -1.02 16 16 C 0.11 2.62 5.14 86.36 0.44 3.06 16 17 C -0.14 -4.70 5.40 30.67 0.17 -4.53 16 18 C 0.18 6.91 2.19 45.02 0.10 7.01 16 19 H 0.05 1.92 8.08 -2.39 -0.02 1.90 16 20 N -0.74 -36.27 4.33 -322.82 -1.40 -37.67 16 21 C -0.32 -17.19 9.93 84.03 0.83 -16.35 16 22 H 0.07 3.67 7.83 -2.91 -0.02 3.64 16 23 C -0.11 -6.11 5.50 84.86 0.47 -5.65 16 24 N -0.98 -61.61 13.70 21.65 0.30 -61.31 16 25 Si 1.13 51.65 29.92 68.60 2.05 53.70 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 29 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.07 1.58 6.70 -2.39 -0.02 1.57 16 32 H 0.04 1.67 7.22 -2.39 -0.02 1.65 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.09 2.50 5.72 -2.39 -0.01 2.49 16 36 H 0.13 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.14 0.96 7.59 -2.38 -0.02 0.95 16 38 H 0.13 1.24 7.98 -2.39 -0.02 1.22 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.10 2.06 3.89 -2.38 -0.01 2.05 16 42 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.04 1.47 7.32 -2.39 -0.02 1.45 16 44 H 0.36 18.83 6.35 -92.71 -0.59 18.24 16 45 H 0.24 15.29 6.77 -92.70 -0.63 14.66 16 Total: -1.00 -71.46 362.93 5.74 -65.72 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: 0.58 Total: 29.13 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.61 Total: -2.40 kcal Atomic # 7 Polarization: -113.05 SS G_CDS: -3.53 Total: -116.58 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 9 Polarization: -13.17 SS G_CDS: 2.09 Total: -11.08 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.70 kcal Total: -71.46 5.74 -65.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920171.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.495 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds