Wall clock time and date at job start Tue Mar 31 2020 17:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46936 * 2 1 4 4 H 1.08998 * 109.49659 * 304.99574 * 3 2 1 5 5 C 1.53188 * 109.49833 * 65.06524 * 3 2 1 6 6 N 1.46921 * 108.77737 * 174.61418 * 5 3 2 7 7 C 1.34781 * 120.62802 * 126.37079 * 6 5 3 8 8 O 1.21284 * 119.99639 * 174.92265 * 7 6 5 9 9 C 1.50706 * 120.00161 * 354.91675 * 7 6 5 10 10 C 1.53000 * 115.54473 * 81.74559 * 9 7 6 11 11 F 1.39901 * 109.47151 * 53.37424 * 10 9 7 12 12 F 1.39901 * 109.46862 * 173.37313 * 10 9 7 13 13 F 1.39897 * 109.47571 * 293.37124 * 10 9 7 14 14 C 1.52994 * 117.49887 * 296.04355 * 9 7 6 15 15 C 1.52997 * 117.50075 * 227.41812 * 9 7 6 16 16 C 1.46921 * 118.74151 * 306.39374 * 6 5 3 17 17 C 1.53192 * 108.77523 * 53.60752 * 16 6 5 18 18 C 1.53042 * 109.52129 * 184.91874 * 3 2 1 19 19 H 1.08996 * 109.46009 * 58.64938 * 18 3 2 20 20 N 1.46502 * 109.45887 * 298.68662 * 18 3 2 21 21 C 1.36945 * 119.99554 * 154.99939 * 20 18 3 22 22 H 1.07995 * 120.00013 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99552 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00000 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46960 * 60.00274 * 25 23 21 27 27 H 1.48501 * 109.47344 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47342 * 300.00440 * 25 23 21 29 29 H 1.09002 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47237 * 300.00249 * 1 2 3 31 31 H 1.09004 * 109.47004 * 59.99738 * 1 2 3 32 32 H 1.08997 * 109.47067 * 240.00507 * 2 1 3 33 33 H 1.08993 * 109.47009 * 119.99827 * 2 1 3 34 34 H 1.09004 * 109.58922 * 294.40846 * 5 3 2 35 35 H 1.09002 * 109.58563 * 54.68560 * 5 3 2 36 36 H 1.09000 * 117.50468 * 359.97438 * 14 9 7 37 37 H 1.09000 * 117.50343 * 145.01834 * 14 9 7 38 38 H 1.08998 * 117.49667 * 214.97902 * 15 9 7 39 39 H 1.09001 * 117.49727 * 0.02562 * 15 9 7 40 40 H 1.09001 * 109.58910 * 173.39033 * 16 6 5 41 41 H 1.09003 * 109.58627 * 293.67837 * 16 6 5 42 42 H 1.08993 * 109.49835 * 65.31443 * 17 16 6 43 43 H 1.08996 * 109.49915 * 185.41539 * 17 16 6 44 44 H 0.96992 * 120.00102 * 335.00231 * 20 18 3 45 45 H 0.97004 * 119.99779 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6364 2.1276 1.3094 6 7 2.2423 3.4654 1.3496 7 6 1.4820 4.5574 1.5644 8 8 2.0041 5.6452 1.6871 9 6 -0.0168 4.4267 1.6520 10 6 -0.5616 3.9758 3.0087 11 9 -0.0644 4.8136 4.0127 12 9 -1.9590 4.0422 2.9955 13 9 -0.1598 2.6592 3.2585 14 6 -0.7592 3.9552 0.4000 15 6 -0.8606 5.4155 0.8450 16 6 3.6926 3.5904 1.1506 17 6 4.0731 2.8891 -0.1571 18 6 3.5654 1.4457 -0.1237 19 1 3.8562 0.9371 -1.0428 20 7 4.1496 0.7493 1.0252 21 6 5.3879 0.1741 0.9198 22 1 5.9339 0.2342 -0.0100 23 6 5.9417 -0.4853 2.0086 24 7 5.2765 -0.5581 3.1420 25 14 7.6311 -1.2694 1.8651 26 1 8.6338 -0.2267 1.5292 27 1 7.9925 -1.9064 3.1570 28 1 7.6099 -2.2988 0.7950 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5510 2.2164 1.3560 35 1 1.9913 1.5379 2.1547 36 1 -0.1637 3.7399 -0.4872 37 1 -1.6360 3.3235 0.5427 38 1 -1.8040 5.7445 1.2806 39 1 -0.3316 6.1604 0.2505 40 1 3.9639 4.6445 1.0922 41 1 4.2174 3.1236 1.9842 42 1 3.6196 3.4149 -0.9972 43 1 5.1574 2.8908 -0.2687 44 1 3.6594 0.6956 1.8604 45 1 5.6634 -1.0192 3.9027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037920172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:32 Heat of formation + Delta-G solvation = -150.192722 kcal Electronic energy + Delta-G solvation = -31966.959239 eV Core-core repulsion = 27377.561830 eV Total energy + Delta-G solvation = -4589.397409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.26868 -47.81382 -47.69424 -40.51207 -38.29298 -36.80720 -34.31561 -33.79766 -31.87142 -29.65974 -28.48738 -27.52421 -25.32242 -24.25872 -23.64886 -23.00636 -22.57152 -20.62229 -19.98171 -18.79717 -18.45390 -18.30852 -17.96778 -17.34978 -16.34514 -15.97158 -15.17445 -14.92929 -14.65815 -14.50624 -14.36584 -14.28581 -14.15234 -14.02336 -13.98792 -13.80613 -13.80186 -13.37143 -13.18226 -13.08022 -12.57371 -12.45457 -12.23019 -11.99933 -11.87895 -11.53456 -11.19695 -11.15085 -11.08340 -10.92083 -10.80412 -10.69300 -10.37683 -10.28896 -10.24250 -9.94952 -9.72937 -9.55259 -8.93494 -8.34053 -6.99579 -5.80061 -3.08853 2.13034 2.72465 2.76088 3.08791 3.41676 3.46911 3.47692 3.52946 3.86794 4.05754 4.16990 4.47533 4.52980 4.56580 4.97870 5.06135 5.14312 5.18880 5.23997 5.41490 5.51984 5.54202 5.55649 5.61314 5.62037 5.71158 5.77394 5.80418 6.00180 6.04776 6.16486 6.27252 6.29523 6.40722 6.49507 6.52993 6.69130 6.73192 6.88705 6.93191 7.53355 7.67082 8.14679 8.38176 9.49881 10.05649 10.40430 11.42196 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.004052 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.684763 B = 6909.152816 C = 7081.222972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.106 3.894 6 N -0.586 5.586 7 C 0.552 3.448 8 O -0.529 6.529 9 C -0.235 4.235 10 C 0.498 3.502 11 F -0.171 7.171 12 F -0.178 7.178 13 F -0.168 7.168 14 C -0.134 4.134 15 C -0.117 4.117 16 C 0.119 3.881 17 C -0.148 4.148 18 C 0.178 3.822 19 H 0.052 0.948 20 N -0.718 5.718 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.794 8.011 -6.356 18.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.016 4.016 6 N -0.317 5.317 7 C 0.337 3.663 8 O -0.406 6.406 9 C -0.240 4.240 10 C 0.443 3.557 11 F -0.152 7.152 12 F -0.159 7.159 13 F -0.149 7.149 14 C -0.171 4.171 15 C -0.154 4.154 16 C -0.002 4.002 17 C -0.189 4.189 18 C 0.067 3.933 19 H 0.070 0.930 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.206 4.206 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.325 8.478 -6.275 18.603 hybrid contribution 0.817 -0.680 0.637 1.240 sum -14.508 7.798 -5.637 17.408 Atomic orbital electron populations 1.21866 0.96883 1.01313 1.01029 1.21432 0.94190 0.95677 1.03650 1.21772 0.97804 0.96204 0.96531 0.91534 1.22116 0.97967 0.82174 0.99361 1.48079 1.08885 1.06249 1.68448 1.18659 0.85209 0.84527 0.77920 1.90702 1.73093 1.26582 1.50175 1.22506 0.95737 1.13815 0.91966 1.19023 0.75298 0.75433 0.85919 1.93239 1.87284 1.71387 1.63268 1.93168 1.29812 1.96148 1.96765 1.93237 1.90261 1.36545 1.94890 1.23306 1.01283 0.98146 0.94380 1.23195 0.99735 0.93359 0.99096 1.21667 0.77753 1.01183 0.99605 1.22535 1.01975 0.98999 0.95431 1.20232 0.89516 0.90761 0.92743 0.93008 1.42454 1.19059 1.64017 1.10508 1.19158 0.93616 1.27192 0.97097 0.91302 1.24696 0.98497 1.01421 0.95976 1.69635 1.38162 1.47957 1.02240 0.86318 0.84406 0.79158 0.76559 1.21357 1.21804 1.21370 0.92991 0.92983 0.93315 0.91832 0.90347 0.89938 0.89990 0.86263 0.86466 0.86513 0.86304 0.90290 0.89635 0.93391 0.90574 0.78125 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 37.16 0.36 -1.35 16 2 C -0.11 -1.58 5.19 -26.73 -0.14 -1.72 16 3 C -0.10 -1.49 2.14 -90.50 -0.19 -1.68 16 4 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.11 1.58 3.57 -3.72 -0.01 1.57 16 6 N -0.59 -9.37 2.97 -172.77 -0.51 -9.88 16 7 C 0.55 8.75 6.62 -10.98 -0.07 8.68 16 8 O -0.53 -9.96 16.45 5.55 0.09 -9.87 16 9 C -0.24 -2.87 1.10 -155.66 -0.17 -3.04 16 10 C 0.50 6.47 3.06 37.16 0.11 6.59 16 11 F -0.17 -2.57 17.09 2.25 0.04 -2.53 16 12 F -0.18 -1.99 15.91 2.25 0.04 -1.95 16 13 F -0.17 -2.35 14.50 2.25 0.03 -2.32 16 14 C -0.13 -1.15 8.15 -26.73 -0.22 -1.36 16 15 C -0.12 -1.05 9.59 -26.73 -0.26 -1.31 16 16 C 0.12 2.09 6.16 -3.71 -0.02 2.07 16 17 C -0.15 -2.48 5.78 -26.61 -0.15 -2.63 16 18 C 0.18 3.16 2.53 -67.88 -0.17 2.99 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -16.09 3.73 -53.38 -0.20 -16.29 16 21 C -0.24 -6.16 9.93 -15.05 -0.15 -6.31 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.32 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.93 -26.95 13.06 55.49 0.72 -26.22 16 25 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.57 6.70 -51.93 -0.35 0.22 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.35 7.70 -51.93 -0.40 0.95 16 34 H 0.08 1.05 2.56 -51.93 -0.13 0.92 16 35 H 0.08 1.46 6.65 -51.93 -0.35 1.11 16 36 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.12 0.81 7.98 -51.93 -0.41 0.39 16 38 H 0.12 0.86 7.59 -51.93 -0.39 0.46 16 39 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.38 7.04 -51.93 -0.37 1.02 16 41 H 0.09 1.75 7.74 -51.93 -0.40 1.34 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 44 H 0.38 9.26 5.95 -40.82 -0.24 9.02 16 45 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -29.72 362.83 -6.92 -36.64 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.39 Total: 8.13 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.18 Total: 2.12 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: 0.01 Total: -52.40 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 9 Polarization: -6.90 SS G_CDS: 0.11 Total: -6.80 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.72 -6.92 -36.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.551 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds