Wall clock time and date at job start Tue Mar 31 2020 17:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46936 * 2 1 4 4 H 1.08998 * 109.49659 * 304.99574 * 3 2 1 5 5 C 1.53188 * 109.49833 * 65.06524 * 3 2 1 6 6 N 1.46921 * 108.77737 * 174.61418 * 5 3 2 7 7 C 1.34781 * 120.62802 * 126.37079 * 6 5 3 8 8 O 1.21284 * 119.99639 * 174.92265 * 7 6 5 9 9 C 1.50706 * 120.00161 * 354.91675 * 7 6 5 10 10 C 1.53000 * 115.54473 * 81.74559 * 9 7 6 11 11 F 1.39901 * 109.47151 * 53.37424 * 10 9 7 12 12 F 1.39901 * 109.46862 * 173.37313 * 10 9 7 13 13 F 1.39897 * 109.47571 * 293.37124 * 10 9 7 14 14 C 1.52994 * 117.49887 * 296.04355 * 9 7 6 15 15 C 1.52997 * 117.50075 * 227.41812 * 9 7 6 16 16 C 1.46921 * 118.74151 * 306.39374 * 6 5 3 17 17 C 1.53192 * 108.77523 * 53.60752 * 16 6 5 18 18 C 1.53042 * 109.52129 * 184.91874 * 3 2 1 19 19 H 1.08996 * 109.46009 * 58.64938 * 18 3 2 20 20 N 1.46502 * 109.45887 * 298.68662 * 18 3 2 21 21 C 1.36945 * 119.99554 * 154.99939 * 20 18 3 22 22 H 1.07995 * 120.00013 * 0.02562 * 21 20 18 23 23 C 1.38814 * 119.99552 * 179.97438 * 21 20 18 24 24 N 1.31618 * 120.00000 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99786 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46960 * 60.00274 * 25 23 21 27 27 H 1.48501 * 109.47344 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47342 * 300.00440 * 25 23 21 29 29 H 1.09002 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47237 * 300.00249 * 1 2 3 31 31 H 1.09004 * 109.47004 * 59.99738 * 1 2 3 32 32 H 1.08997 * 109.47067 * 240.00507 * 2 1 3 33 33 H 1.08993 * 109.47009 * 119.99827 * 2 1 3 34 34 H 1.09004 * 109.58922 * 294.40846 * 5 3 2 35 35 H 1.09002 * 109.58563 * 54.68560 * 5 3 2 36 36 H 1.09000 * 117.50468 * 359.97438 * 14 9 7 37 37 H 1.09000 * 117.50343 * 145.01834 * 14 9 7 38 38 H 1.08998 * 117.49667 * 214.97902 * 15 9 7 39 39 H 1.09001 * 117.49727 * 0.02562 * 15 9 7 40 40 H 1.09001 * 109.58910 * 173.39033 * 16 6 5 41 41 H 1.09003 * 109.58627 * 293.67837 * 16 6 5 42 42 H 1.08993 * 109.49835 * 65.31443 * 17 16 6 43 43 H 1.08996 * 109.49915 * 185.41539 * 17 16 6 44 44 H 0.96992 * 120.00102 * 335.00231 * 20 18 3 45 45 H 0.97004 * 119.99779 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6056 1.9820 -0.8417 5 6 1.6364 2.1276 1.3094 6 7 2.2423 3.4654 1.3496 7 6 1.4820 4.5574 1.5644 8 8 2.0041 5.6452 1.6871 9 6 -0.0168 4.4267 1.6520 10 6 -0.5616 3.9758 3.0087 11 9 -0.0644 4.8136 4.0127 12 9 -1.9590 4.0422 2.9955 13 9 -0.1598 2.6592 3.2585 14 6 -0.7592 3.9552 0.4000 15 6 -0.8606 5.4155 0.8450 16 6 3.6926 3.5904 1.1506 17 6 4.0731 2.8891 -0.1571 18 6 3.5654 1.4457 -0.1237 19 1 3.8562 0.9371 -1.0428 20 7 4.1496 0.7493 1.0252 21 6 5.3879 0.1741 0.9198 22 1 5.9339 0.2342 -0.0100 23 6 5.9417 -0.4853 2.0086 24 7 5.2765 -0.5581 3.1420 25 14 7.6311 -1.2694 1.8651 26 1 8.6338 -0.2267 1.5292 27 1 7.9925 -1.9064 3.1570 28 1 7.6099 -2.2988 0.7950 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5510 2.2164 1.3560 35 1 1.9913 1.5379 2.1547 36 1 -0.1637 3.7399 -0.4872 37 1 -1.6360 3.3235 0.5427 38 1 -1.8040 5.7445 1.2806 39 1 -0.3316 6.1604 0.2505 40 1 3.9639 4.6445 1.0922 41 1 4.2174 3.1236 1.9842 42 1 3.6196 3.4149 -0.9972 43 1 5.1574 2.8908 -0.2687 44 1 3.6594 0.6956 1.8604 45 1 5.6634 -1.0192 3.9027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037920172.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:42:31 Heat of formation + Delta-G solvation = -167.037909 kcal Electronic energy + Delta-G solvation = -31967.689701 eV Core-core repulsion = 27377.561830 eV Total energy + Delta-G solvation = -4590.127871 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.28710 -48.79639 -48.77656 -41.73184 -39.56757 -37.80074 -35.88417 -35.15807 -33.55942 -31.25327 -29.83089 -28.49542 -26.69369 -25.59441 -25.31525 -23.84629 -23.62527 -21.83114 -21.13906 -19.98381 -19.48644 -19.43695 -19.25753 -19.14117 -17.57059 -17.07750 -16.62644 -16.26161 -15.87153 -15.82732 -15.66612 -15.49657 -15.28499 -15.19137 -15.13129 -14.94788 -14.83734 -14.75511 -14.45708 -14.36023 -14.02312 -13.65285 -13.39800 -13.06300 -12.98620 -12.81818 -12.62984 -12.59490 -12.38617 -12.19496 -12.13960 -11.92598 -11.86991 -11.82103 -11.51502 -11.39798 -11.27390 -10.90817 -10.79499 -9.71950 -8.91810 -7.88840 -5.14620 1.01101 1.48786 1.49945 1.55679 1.65866 1.74336 2.13994 2.58805 2.59852 2.83555 3.14729 3.20826 3.45054 3.57710 3.65451 3.77217 3.89589 4.05917 4.07589 4.26572 4.34804 4.41299 4.45664 4.50715 4.56756 4.60491 4.68442 4.81143 4.84750 4.93672 4.99241 5.01735 5.11447 5.14245 5.22940 5.28977 5.33478 5.46717 5.53496 5.59773 5.70459 6.27254 6.33231 6.88887 7.40751 8.18188 8.40165 9.34326 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.015890 B = 0.004052 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.684763 B = 6909.152816 C = 7081.222972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C -0.093 4.093 4 H 0.103 0.897 5 C 0.115 3.885 6 N -0.587 5.587 7 C 0.551 3.449 8 O -0.565 6.565 9 C -0.264 4.264 10 C 0.497 3.503 11 F -0.189 7.189 12 F -0.163 7.163 13 F -0.178 7.178 14 C -0.111 4.111 15 C -0.103 4.103 16 C 0.125 3.875 17 C -0.137 4.137 18 C 0.170 3.830 19 H 0.052 0.948 20 N -0.725 5.725 21 C -0.227 4.227 22 H 0.075 0.925 23 C -0.073 4.073 24 N -0.969 5.969 25 Si 0.962 3.038 26 H -0.283 1.283 27 H -0.303 1.303 28 H -0.279 1.279 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.111 0.889 35 H 0.045 0.955 36 H 0.131 0.869 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.180 8.569 -8.995 22.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.112 4.112 4 H 0.121 0.879 5 C -0.007 4.007 6 N -0.317 5.317 7 C 0.338 3.662 8 O -0.444 6.444 9 C -0.269 4.269 10 C 0.443 3.557 11 F -0.170 7.170 12 F -0.144 7.144 13 F -0.160 7.160 14 C -0.148 4.148 15 C -0.140 4.140 16 C 0.003 3.997 17 C -0.178 4.178 18 C 0.061 3.939 19 H 0.070 0.930 20 N -0.365 5.365 21 C -0.359 4.359 22 H 0.093 0.907 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.209 1.209 27 H -0.229 1.229 28 H -0.205 1.205 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.128 0.872 35 H 0.064 0.936 36 H 0.149 0.851 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.064 0.936 42 H 0.097 0.903 43 H 0.079 0.921 44 H 0.206 0.794 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.732 9.044 -8.969 21.832 hybrid contribution 1.521 -0.783 1.421 2.224 sum -16.210 8.261 -7.548 19.697 Atomic orbital electron populations 1.21820 0.93898 1.02194 1.02536 1.21356 0.96794 0.94821 1.01618 1.21728 0.95181 0.96908 0.97399 0.87901 1.22063 0.99247 0.81109 0.98303 1.48101 1.08157 1.06975 1.68511 1.19215 0.86861 0.83608 0.76492 1.90677 1.74363 1.27861 1.51468 1.22399 0.93249 1.18283 0.92962 1.19153 0.75905 0.74771 0.85893 1.93203 1.87656 1.71904 1.64263 1.93191 1.28487 1.96045 1.96693 1.93219 1.90469 1.37272 1.94998 1.23615 1.00975 0.98106 0.92101 1.23397 0.99396 0.93704 0.97468 1.21400 0.79003 1.00630 0.98676 1.22390 1.01231 0.98276 0.95856 1.20510 0.91932 0.90617 0.90831 0.92956 1.42589 1.18195 1.64212 1.11550 1.19539 0.94471 1.25173 0.96750 0.90710 1.25372 1.01729 1.03320 0.96071 1.69796 1.39616 1.49840 1.02835 0.85375 0.80978 0.78401 0.75974 1.20945 1.22930 1.20521 0.92630 0.92681 0.90421 0.91948 0.94348 0.87159 0.93615 0.85077 0.83898 0.84542 0.86237 0.90487 0.93589 0.90309 0.92089 0.79392 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.67 71.98 0.70 -2.08 16 2 C -0.11 -2.89 5.19 30.60 0.16 -2.74 16 3 C -0.09 -2.48 2.14 -10.71 -0.02 -2.50 16 4 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 5 C 0.11 3.31 3.57 86.36 0.31 3.62 16 6 N -0.59 -18.48 2.97 -818.91 -2.43 -20.92 16 7 C 0.55 16.91 6.62 87.66 0.58 17.49 16 8 O -0.56 -21.17 16.45 -3.04 -0.05 -21.22 16 9 C -0.26 -5.78 1.10 -52.93 -0.06 -5.84 16 10 C 0.50 12.11 3.06 71.98 0.22 12.33 16 11 F -0.19 -5.64 17.09 44.97 0.77 -4.87 16 12 F -0.16 -3.18 15.91 44.97 0.72 -2.46 16 13 F -0.18 -4.83 14.50 44.97 0.65 -4.18 16 14 C -0.11 -1.37 8.15 30.59 0.25 -1.12 16 15 C -0.10 -1.46 9.59 30.59 0.29 -1.17 16 16 C 0.13 4.48 6.16 86.36 0.53 5.01 16 17 C -0.14 -4.45 5.78 30.67 0.18 -4.27 16 18 C 0.17 5.90 2.53 45.02 0.11 6.01 16 19 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 20 N -0.72 -33.29 3.73 -322.80 -1.20 -34.49 16 21 C -0.23 -11.89 9.93 84.03 0.83 -11.05 16 22 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 23 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 24 N -0.97 -58.40 13.06 21.65 0.28 -58.11 16 25 Si 0.96 45.67 29.55 68.60 2.03 47.70 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 1.01 6.70 -2.39 -0.02 0.99 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.34 7.70 -2.39 -0.02 1.32 16 34 H 0.11 2.55 2.56 -2.38 -0.01 2.54 16 35 H 0.05 1.68 6.65 -2.39 -0.02 1.67 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.14 1.10 7.98 -2.39 -0.02 1.08 16 38 H 0.14 1.41 7.59 -2.39 -0.02 1.39 16 39 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.76 7.04 -2.39 -0.02 2.74 16 41 H 0.05 2.00 7.74 -2.39 -0.02 1.98 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.37 18.86 5.95 -92.71 -0.55 18.31 16 45 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -68.07 362.83 5.78 -62.29 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 0.47 Total: 26.17 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 4.55 Total: 10.10 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -3.35 Total: -113.52 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 2.14 Total: -11.51 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -68.07 5.78 -62.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037920172.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.750 kcal (2) G-P(sol) polarization free energy of solvation -68.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds