Wall clock time and date at job start Tue Mar 31 2020 17:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 C 1.50699 * 109.47148 * 120.00092 * 2 1 3 5 5 O 1.21283 * 119.99659 * 116.75581 * 4 2 1 6 6 N 1.34775 * 119.99875 * 296.75244 * 4 2 1 7 7 C 1.48278 * 127.72064 * 355.27002 * 6 4 2 8 8 C 1.54754 * 104.66544 * 141.30125 * 7 6 4 9 9 C 1.52880 * 104.40604 * 23.67947 * 8 7 6 10 10 C 1.53938 * 111.65130 * 237.35307 * 9 8 7 11 11 C 1.54586 * 102.67185 * 273.25648 * 10 9 8 12 12 N 1.47133 * 107.45214 * 339.27740 * 11 10 9 13 13 C 1.36941 * 125.60605 * 179.02995 * 12 11 10 14 14 H 1.07999 * 119.99410 * 179.97438 * 13 12 11 15 15 C 1.38804 * 119.99928 * 359.96492 * 13 12 11 16 16 N 1.31621 * 120.00523 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99885 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46900 * 60.00595 * 17 15 13 19 19 H 1.48504 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47062 * 300.00465 * 17 15 13 21 21 C 1.47707 * 108.78434 * 358.98517 * 12 11 10 22 22 C 1.48484 * 127.71853 * 175.30687 * 6 4 2 23 23 C 1.53000 * 109.47312 * 240.00250 * 2 1 3 24 24 F 1.39898 * 109.47060 * 299.99931 * 23 2 1 25 25 F 1.39904 * 109.47491 * 59.99894 * 23 2 1 26 26 F 1.39894 * 109.47411 * 180.02562 * 23 2 1 27 27 H 1.08997 * 109.46901 * 293.73462 * 1 2 3 28 28 H 1.08999 * 109.46746 * 53.73449 * 1 2 3 29 29 H 1.08999 * 109.46761 * 173.73295 * 1 2 3 30 30 H 1.09002 * 109.47445 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47153 * 299.99900 * 3 2 1 32 32 H 1.09002 * 109.47414 * 60.00149 * 3 2 1 33 33 H 1.09005 * 110.39543 * 22.51255 * 7 6 4 34 34 H 1.08994 * 110.40161 * 260.10689 * 7 6 4 35 35 H 1.08994 * 110.45043 * 264.94294 * 8 7 6 36 36 H 1.09002 * 110.54809 * 142.45549 * 8 7 6 37 37 H 1.08998 * 110.72861 * 155.00525 * 10 9 8 38 38 H 1.08998 * 110.87301 * 31.58399 * 10 9 8 39 39 H 1.08996 * 109.87286 * 219.76521 * 11 10 9 40 40 H 1.09005 * 109.87026 * 98.78385 * 11 10 9 41 41 H 0.96997 * 120.00492 * 179.97438 * 16 15 13 42 42 H 1.09000 * 110.38800 * 141.41369 * 21 12 11 43 43 H 1.08995 * 110.39275 * 263.79798 * 21 12 11 44 44 H 1.08998 * 110.47579 * 99.51347 * 22 6 4 45 45 H 1.09008 * 110.46877 * 336.90317 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6803 -1.7297 1.1200 6 7 1.7616 -0.2130 2.4534 7 6 1.0753 1.0592 2.7839 8 6 0.1915 0.7210 4.0084 9 6 0.8677 -0.4954 4.6412 10 6 -0.0946 -1.6929 4.7394 11 6 -0.8080 -1.4450 6.0881 12 7 0.0439 -0.5428 6.8787 13 6 -0.2445 -0.0664 8.1297 14 1 0.4492 0.5936 8.6294 15 6 -1.4284 -0.4317 8.7555 16 7 -2.2737 -1.2363 8.1467 17 14 -1.8222 0.2187 10.4618 18 1 -1.8787 1.7021 10.4252 19 1 -3.1348 -0.3163 10.9048 20 1 -0.7660 -0.2132 11.4121 21 6 1.2619 -0.2361 6.1014 22 6 2.0846 -0.8162 3.7713 23 6 2.0401 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2493 25 9 1.5738 -0.0617 -2.3916 26 9 3.4390 -0.7217 -1.2490 27 1 -0.3633 0.4136 0.9407 28 1 -0.3633 0.6079 -0.8286 29 1 -0.3633 -1.0215 -0.1122 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.4570 1.3855 1.9476 34 1 1.8037 1.8280 3.0416 35 1 -0.8206 0.4715 3.6902 36 1 0.1746 1.5551 4.7100 37 1 0.4589 -2.6317 4.7621 38 1 -0.8097 -1.6850 3.9168 39 1 -0.9390 -2.3890 6.6170 40 1 -1.7785 -0.9803 5.9140 41 1 -3.1008 -1.4918 8.5842 42 1 1.5472 0.8069 6.2383 43 1 2.0775 -0.8958 6.3974 44 1 2.9825 -0.3611 4.1891 45 1 2.2115 -1.8946 3.6761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041798236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:48 Heat of formation + Delta-G solvation = -150.108578 kcal Electronic energy + Delta-G solvation = -31044.272345 eV Core-core repulsion = 26454.878586 eV Total energy + Delta-G solvation = -4589.393760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.25994 -47.76137 -47.64295 -40.72515 -38.74609 -36.05147 -35.47153 -32.61906 -30.37671 -29.44628 -28.55981 -27.95925 -26.47146 -25.85676 -24.44720 -22.80525 -22.16068 -20.27846 -19.88648 -18.96940 -18.48604 -18.45645 -17.39877 -16.88622 -16.55079 -15.93135 -15.50075 -14.89837 -14.78065 -14.57592 -14.39435 -14.25838 -14.08281 -13.91282 -13.85825 -13.80125 -13.64815 -13.52249 -13.16642 -12.90103 -12.76519 -12.65606 -12.50818 -12.09865 -12.06057 -11.83086 -11.68130 -11.42250 -11.21902 -11.05856 -10.91971 -10.75559 -10.26355 -10.10840 -10.02419 -9.94068 -9.78485 -9.67695 -8.80634 -8.62426 -6.86656 -5.74145 -3.07986 2.28244 2.32078 2.76010 3.37762 3.42502 3.43641 3.43829 3.74891 3.77685 4.22820 4.38751 4.46077 4.52038 4.61215 4.77046 4.90705 5.01721 5.08065 5.16263 5.17521 5.22389 5.29676 5.39556 5.48883 5.59621 5.67478 5.72722 5.79457 5.84187 5.87551 5.94271 6.17944 6.31125 6.32026 6.46124 6.55528 6.65871 6.78519 7.34877 7.52503 7.59537 7.79629 7.85535 8.22248 9.18633 9.78851 10.44707 11.37158 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.031268 B = 0.002725 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.258933 B =10274.417420 C =10304.523561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.159 4.159 4 C 0.547 3.453 5 O -0.525 6.525 6 N -0.610 5.610 7 C 0.085 3.915 8 C -0.111 4.111 9 C -0.086 4.086 10 C -0.130 4.130 11 C 0.180 3.820 12 N -0.603 5.603 13 C -0.230 4.230 14 H 0.077 0.923 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.151 3.849 22 C 0.124 3.876 23 C 0.476 3.524 24 F -0.170 7.170 25 F -0.181 7.181 26 F -0.174 7.174 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.046 0.954 41 H 0.253 0.747 42 H 0.041 0.959 43 H 0.020 0.980 44 H 0.074 0.926 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.218 6.503 -18.619 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.132 4.132 3 C -0.216 4.216 4 C 0.333 3.667 5 O -0.401 6.401 6 N -0.344 5.344 7 C -0.037 4.037 8 C -0.149 4.149 9 C -0.088 4.088 10 C -0.169 4.169 11 C 0.055 3.945 12 N -0.330 5.330 13 C -0.358 4.358 14 H 0.095 0.905 15 C -0.203 4.203 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.024 3.976 22 C 0.002 3.998 23 C 0.421 3.579 24 F -0.152 7.152 25 F -0.162 7.162 26 F -0.155 7.155 27 H 0.110 0.890 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.038 0.962 44 H 0.093 0.907 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.420 5.859 -18.641 20.568 hybrid contribution -0.219 0.169 0.734 0.784 sum 6.201 6.029 -17.907 19.886 Atomic orbital electron populations 1.22097 0.88924 1.04932 1.05235 1.22021 1.00926 0.98913 0.91319 1.22204 1.02969 0.91025 1.05428 1.19184 0.80172 0.84565 0.82751 1.90808 1.39257 1.24432 1.85611 1.48871 1.57763 1.22838 1.04884 1.23003 0.95982 0.86038 0.98700 1.22348 0.98547 0.98488 0.95486 1.21683 0.94717 0.96295 0.96068 1.22874 0.97786 0.95868 1.00352 1.21191 0.92679 0.94438 0.86203 1.44521 1.17627 1.55065 1.15791 1.18992 1.02573 1.23548 0.90667 0.90520 1.24788 0.97049 0.99813 0.98672 1.69953 1.11260 1.38303 1.37363 0.86215 0.77352 0.78284 0.83979 1.21187 1.21634 1.21202 1.21355 0.90785 0.97831 0.87591 1.22288 0.97519 0.99752 0.80240 1.19750 0.75900 0.77774 0.84488 1.93210 1.88265 1.37067 1.96628 1.93164 1.88585 1.80883 1.53617 1.93193 1.29300 1.96334 1.96661 0.89009 0.89867 0.90419 0.90648 0.89949 0.88849 0.89647 0.90459 0.90633 0.89437 0.92373 0.92210 0.94066 0.93610 0.93714 0.94043 0.96201 0.90741 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.01 37.16 0.30 -0.98 16 2 C -0.13 -1.29 0.32 -155.66 -0.05 -1.34 16 3 C -0.16 -1.17 7.95 37.16 0.30 -0.87 16 4 C 0.55 7.34 6.39 -10.99 -0.07 7.27 16 5 O -0.53 -9.09 15.15 5.56 0.08 -9.00 16 6 N -0.61 -7.46 3.31 -169.55 -0.56 -8.02 16 7 C 0.08 0.82 4.81 -2.14 -0.01 0.81 16 8 C -0.11 -1.42 6.27 -25.87 -0.16 -1.59 16 9 C -0.09 -1.32 0.81 -153.85 -0.12 -1.44 16 10 C -0.13 -2.31 5.87 -25.41 -0.15 -2.46 16 11 C 0.18 4.15 5.33 -2.86 -0.02 4.13 16 12 N -0.60 -14.50 3.41 -170.50 -0.58 -15.08 16 13 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 14 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 15 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 16 N -0.92 -26.35 10.30 55.49 0.57 -25.77 16 17 Si 0.91 21.52 29.55 -169.99 -5.02 16.49 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.15 2.83 6.04 -3.15 -0.02 2.81 16 22 C 0.12 1.70 6.17 -2.96 -0.02 1.68 16 23 C 0.48 5.66 1.95 37.16 0.07 5.73 16 24 F -0.17 -2.36 15.70 2.25 0.04 -2.32 16 25 F -0.18 -1.88 16.40 2.25 0.04 -1.85 16 26 F -0.17 -2.31 15.96 2.25 0.04 -2.28 16 27 H 0.09 0.70 5.29 -51.93 -0.27 0.42 16 28 H 0.08 0.52 7.98 -51.93 -0.41 0.11 16 29 H 0.08 0.72 7.63 -51.93 -0.40 0.32 16 30 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16 31 H 0.08 0.47 7.80 -51.93 -0.41 0.07 16 32 H 0.09 0.56 4.69 -51.93 -0.24 0.32 16 33 H 0.09 0.63 3.94 -51.93 -0.20 0.42 16 34 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 35 H 0.07 1.00 7.50 -51.93 -0.39 0.61 16 36 H 0.09 1.20 7.54 -51.93 -0.39 0.80 16 37 H 0.06 1.02 7.74 -51.93 -0.40 0.62 16 38 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 39 H 0.04 1.08 7.50 -51.93 -0.39 0.69 16 40 H 0.05 1.17 7.38 -51.93 -0.38 0.78 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 43 H 0.02 0.38 8.05 -51.93 -0.42 -0.03 16 44 H 0.07 0.95 7.93 -51.93 -0.41 0.53 16 45 H 0.08 1.28 7.41 -51.92 -0.38 0.90 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -31.62 352.61 -6.57 -38.19 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -6.28 Total: -2.85 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -0.20 Total: 7.18 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.57 Total: -48.88 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.00 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.62 -6.57 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041798236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.916 kcal (2) G-P(sol) polarization free energy of solvation -31.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds