Wall clock time and date at job start Tue Mar 31 2020 17:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47067 * 2 1 4 4 C 1.50699 * 109.47148 * 120.00092 * 2 1 3 5 5 O 1.21283 * 119.99659 * 116.75581 * 4 2 1 6 6 N 1.34775 * 119.99875 * 296.75244 * 4 2 1 7 7 C 1.48278 * 127.72064 * 355.27002 * 6 4 2 8 8 C 1.54754 * 104.66544 * 141.30125 * 7 6 4 9 9 C 1.52880 * 104.40604 * 23.67947 * 8 7 6 10 10 C 1.53938 * 111.65130 * 237.35307 * 9 8 7 11 11 C 1.54586 * 102.67185 * 273.25648 * 10 9 8 12 12 N 1.47133 * 107.45214 * 339.27740 * 11 10 9 13 13 C 1.36941 * 125.60605 * 179.02995 * 12 11 10 14 14 H 1.07999 * 119.99410 * 179.97438 * 13 12 11 15 15 C 1.38804 * 119.99928 * 359.96492 * 13 12 11 16 16 N 1.31621 * 120.00523 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99885 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.46900 * 60.00595 * 17 15 13 19 19 H 1.48504 * 109.47181 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47062 * 300.00465 * 17 15 13 21 21 C 1.47707 * 108.78434 * 358.98517 * 12 11 10 22 22 C 1.48484 * 127.71853 * 175.30687 * 6 4 2 23 23 C 1.53000 * 109.47312 * 240.00250 * 2 1 3 24 24 F 1.39898 * 109.47060 * 299.99931 * 23 2 1 25 25 F 1.39904 * 109.47491 * 59.99894 * 23 2 1 26 26 F 1.39894 * 109.47411 * 180.02562 * 23 2 1 27 27 H 1.08997 * 109.46901 * 293.73462 * 1 2 3 28 28 H 1.08999 * 109.46746 * 53.73449 * 1 2 3 29 29 H 1.08999 * 109.46761 * 173.73295 * 1 2 3 30 30 H 1.09002 * 109.47445 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47153 * 299.99900 * 3 2 1 32 32 H 1.09002 * 109.47414 * 60.00149 * 3 2 1 33 33 H 1.09005 * 110.39543 * 22.51255 * 7 6 4 34 34 H 1.08994 * 110.40161 * 260.10689 * 7 6 4 35 35 H 1.08994 * 110.45043 * 264.94294 * 8 7 6 36 36 H 1.09002 * 110.54809 * 142.45549 * 8 7 6 37 37 H 1.08998 * 110.72861 * 155.00525 * 10 9 8 38 38 H 1.08998 * 110.87301 * 31.58399 * 10 9 8 39 39 H 1.08996 * 109.87286 * 219.76521 * 11 10 9 40 40 H 1.09005 * 109.87026 * 98.78385 * 11 10 9 41 41 H 0.96997 * 120.00492 * 179.97438 * 16 15 13 42 42 H 1.09000 * 110.38800 * 141.41369 * 21 12 11 43 43 H 1.08995 * 110.39275 * 263.79798 * 21 12 11 44 44 H 1.08998 * 110.47579 * 99.51347 * 22 6 4 45 45 H 1.09008 * 110.46877 * 336.90317 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6803 -1.7297 1.1200 6 7 1.7616 -0.2130 2.4534 7 6 1.0753 1.0592 2.7839 8 6 0.1915 0.7210 4.0084 9 6 0.8677 -0.4954 4.6412 10 6 -0.0946 -1.6929 4.7394 11 6 -0.8080 -1.4450 6.0881 12 7 0.0439 -0.5428 6.8787 13 6 -0.2445 -0.0664 8.1297 14 1 0.4492 0.5936 8.6294 15 6 -1.4284 -0.4317 8.7555 16 7 -2.2737 -1.2363 8.1467 17 14 -1.8222 0.2187 10.4618 18 1 -1.8787 1.7021 10.4252 19 1 -3.1348 -0.3163 10.9048 20 1 -0.7660 -0.2132 11.4121 21 6 1.2619 -0.2361 6.1014 22 6 2.0846 -0.8162 3.7713 23 6 2.0401 -0.7212 -1.2493 24 9 1.5738 -2.0402 -1.2493 25 9 1.5738 -0.0617 -2.3916 26 9 3.4390 -0.7217 -1.2490 27 1 -0.3633 0.4136 0.9407 28 1 -0.3633 0.6079 -0.8286 29 1 -0.3633 -1.0215 -0.1122 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.4570 1.3855 1.9476 34 1 1.8037 1.8280 3.0416 35 1 -0.8206 0.4715 3.6902 36 1 0.1746 1.5551 4.7100 37 1 0.4589 -2.6317 4.7621 38 1 -0.8097 -1.6850 3.9168 39 1 -0.9390 -2.3890 6.6170 40 1 -1.7785 -0.9803 5.9140 41 1 -3.1008 -1.4918 8.5842 42 1 1.5472 0.8069 6.2383 43 1 2.0775 -0.8958 6.3974 44 1 2.9825 -0.3611 4.1891 45 1 2.2115 -1.8946 3.6761 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041798236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:47 Heat of formation + Delta-G solvation = -169.295084 kcal Electronic energy + Delta-G solvation = -31045.104335 eV Core-core repulsion = 26454.878586 eV Total energy + Delta-G solvation = -4590.225749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.17812 -48.64945 -48.62492 -41.78182 -40.02342 -37.32275 -36.50015 -34.35392 -31.86670 -30.81562 -29.99295 -28.53365 -27.45483 -27.23468 -25.92787 -24.11327 -23.03678 -22.09727 -20.82735 -20.22177 -19.43694 -19.39881 -18.81259 -18.20937 -17.66105 -16.94687 -16.69958 -16.38925 -15.90077 -15.76178 -15.66306 -15.46781 -15.23249 -15.02865 -14.81137 -14.76135 -14.57515 -14.42314 -14.33998 -14.12363 -13.87526 -13.68366 -13.59760 -13.31571 -13.07727 -13.00297 -12.94963 -12.67951 -12.58766 -12.48193 -12.33892 -12.06032 -12.01790 -11.79414 -11.53632 -11.32281 -11.23119 -10.97974 -10.65797 -9.83611 -8.85340 -7.81186 -5.16199 1.33789 1.38320 1.48591 1.51196 1.57289 1.84074 2.52494 2.57797 2.88835 2.94763 3.35526 3.39824 3.54370 3.62858 3.66105 3.68875 3.76445 3.88925 4.20004 4.27598 4.39402 4.44596 4.53281 4.55461 4.61852 4.63190 4.65673 4.72667 4.77552 4.88342 4.90416 5.01241 5.05595 5.10896 5.12930 5.22141 5.34177 5.45691 5.49910 5.68398 5.80411 6.22427 6.37802 6.85287 7.13589 7.81500 8.46111 9.28851 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.031268 B = 0.002725 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.258933 B =10274.417420 C =10304.523561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.158 4.158 4 C 0.542 3.458 5 O -0.572 6.572 6 N -0.607 5.607 7 C 0.092 3.908 8 C -0.110 4.110 9 C -0.073 4.073 10 C -0.118 4.118 11 C 0.191 3.809 12 N -0.623 5.623 13 C -0.238 4.238 14 H 0.085 0.915 15 C -0.066 4.066 16 N -0.952 5.952 17 Si 0.976 3.024 18 H -0.273 1.273 19 H -0.299 1.299 20 H -0.281 1.281 21 C 0.147 3.853 22 C 0.129 3.871 23 C 0.468 3.532 24 F -0.187 7.187 25 F -0.171 7.171 26 F -0.185 7.185 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.075 0.925 39 H -0.004 1.004 40 H 0.015 0.985 41 H 0.245 0.755 42 H 0.058 0.942 43 H 0.019 0.981 44 H 0.091 0.909 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 9.261 -19.825 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.124 4.124 3 C -0.214 4.214 4 C 0.330 3.670 5 O -0.452 6.452 6 N -0.339 5.339 7 C -0.029 4.029 8 C -0.148 4.148 9 C -0.075 4.075 10 C -0.156 4.156 11 C 0.066 3.934 12 N -0.349 5.349 13 C -0.367 4.367 14 H 0.103 0.897 15 C -0.259 4.259 16 N -0.602 5.602 17 Si 0.804 3.196 18 H -0.199 1.199 19 H -0.225 1.225 20 H -0.207 1.207 21 C 0.022 3.978 22 C 0.006 3.994 23 C 0.414 3.586 24 F -0.169 7.169 25 F -0.152 7.152 26 F -0.167 7.167 27 H 0.121 0.879 28 H 0.128 0.872 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.014 0.986 40 H 0.033 0.967 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.037 0.963 44 H 0.109 0.891 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.057 8.661 -19.860 22.787 hybrid contribution -0.368 -0.728 1.113 1.380 sum 6.689 7.933 -18.747 21.427 Atomic orbital electron populations 1.22180 0.87246 1.04776 1.06939 1.22068 1.02024 0.99818 0.88453 1.22308 1.02720 0.88941 1.07473 1.19770 0.79431 0.84062 0.83724 1.90789 1.41437 1.26590 1.86349 1.48869 1.57464 1.23508 1.04056 1.23188 0.96321 0.85169 0.98212 1.22315 0.98873 0.96901 0.96685 1.21524 0.95007 0.96300 0.94633 1.22716 0.98224 0.97145 0.97541 1.20878 0.92312 0.91886 0.88315 1.44799 1.19381 1.55027 1.15738 1.19426 1.02474 1.22928 0.91864 0.89697 1.25605 0.97339 1.00639 1.02331 1.70185 1.11407 1.39903 1.38658 0.85195 0.76517 0.78119 0.79755 1.19904 1.22508 1.20695 1.21548 0.88751 0.98560 0.88944 1.22100 0.97113 0.99158 0.80995 1.20110 0.75433 0.77407 0.85669 1.93176 1.88387 1.38519 1.96771 1.93179 1.88358 1.80474 1.53218 1.93167 1.30381 1.96352 1.96783 0.87894 0.87249 0.91879 0.91240 0.87753 0.86934 0.86543 0.87676 0.90985 0.89772 0.92519 0.90678 0.98567 0.96674 0.94616 0.92427 0.96301 0.89070 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.01 71.98 0.58 -1.45 16 2 C -0.12 -2.09 0.32 -52.93 -0.02 -2.11 16 3 C -0.16 -1.64 7.95 71.98 0.57 -1.07 16 4 C 0.54 13.50 6.39 87.66 0.56 14.05 16 5 O -0.57 -19.58 15.15 -3.04 -0.05 -19.62 16 6 N -0.61 -13.13 3.31 -808.71 -2.68 -15.81 16 7 C 0.09 1.36 4.81 86.64 0.42 1.78 16 8 C -0.11 -2.51 6.27 31.15 0.20 -2.32 16 9 C -0.07 -2.13 0.81 -51.76 -0.04 -2.17 16 10 C -0.12 -4.19 5.87 31.45 0.18 -4.00 16 11 C 0.19 9.17 5.33 86.80 0.46 9.63 16 12 N -0.62 -30.25 3.41 -693.34 -2.36 -32.61 16 13 C -0.24 -12.78 10.28 84.03 0.86 -11.92 16 14 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 15 C -0.07 -3.68 5.49 84.86 0.47 -3.22 16 16 N -0.95 -56.46 10.30 21.65 0.22 -56.24 16 17 Si 0.98 44.68 29.55 68.60 2.03 46.70 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 C 0.15 5.35 6.04 86.30 0.52 5.87 16 22 C 0.13 3.29 6.17 85.99 0.53 3.82 16 23 C 0.47 10.42 1.95 71.98 0.14 10.56 16 24 F -0.19 -5.11 15.70 44.97 0.71 -4.41 16 25 F -0.17 -3.15 16.40 44.97 0.74 -2.42 16 26 F -0.19 -4.78 15.96 44.97 0.72 -4.06 16 27 H 0.10 1.11 5.29 -2.39 -0.01 1.10 16 28 H 0.11 0.89 7.98 -2.39 -0.02 0.87 16 29 H 0.06 1.04 7.63 -2.39 -0.02 1.02 16 30 H 0.07 0.85 7.80 -2.39 -0.02 0.84 16 31 H 0.10 0.68 7.80 -2.39 -0.02 0.66 16 32 H 0.11 0.72 4.69 -2.39 -0.01 0.71 16 33 H 0.12 1.06 3.94 -2.38 -0.01 1.05 16 34 H 0.11 1.11 8.07 -2.39 -0.02 1.10 16 35 H 0.07 1.73 7.50 -2.39 -0.02 1.71 16 36 H 0.08 2.05 7.54 -2.39 -0.02 2.03 16 37 H 0.06 2.02 7.74 -2.39 -0.02 2.00 16 38 H 0.07 2.43 7.70 -2.39 -0.02 2.41 16 39 H 0.00 -0.22 7.50 -2.39 -0.02 -0.24 16 40 H 0.02 0.80 7.38 -2.38 -0.02 0.79 16 41 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 42 H 0.06 1.92 7.75 -2.39 -0.02 1.91 16 43 H 0.02 0.71 8.05 -2.39 -0.02 0.69 16 44 H 0.09 2.07 7.93 -2.39 -0.02 2.05 16 45 H 0.07 1.99 7.41 -2.38 -0.02 1.98 16 Total: -1.00 -72.54 352.61 5.78 -66.77 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: 1.02 Total: 4.22 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 5.43 Total: 17.47 kcal Atomic # 7 Polarization: -99.84 SS G_CDS: -4.81 Total: -104.66 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 9 Polarization: -13.05 SS G_CDS: 2.16 Total: -10.88 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -72.54 5.78 -66.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041798236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.529 kcal (2) G-P(sol) polarization free energy of solvation -72.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds