Wall clock time and date at job start Tue Mar 31 2020 17:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 C 1.50698 * 109.47350 * 239.99787 * 2 1 3 5 5 O 1.21283 * 120.00092 * 241.46904 * 4 2 1 6 6 N 1.34778 * 119.99764 * 61.46854 * 4 2 1 7 7 C 1.47148 * 121.22293 * 354.79468 * 6 4 2 8 8 C 1.52835 * 107.97888 * 122.70225 * 7 6 4 9 9 C 1.53090 * 110.58477 * 57.34490 * 8 7 6 10 10 H 1.09009 * 112.49258 * 71.38534 * 9 8 7 11 11 C 1.56023 * 106.39122 * 195.44731 * 9 8 7 12 12 C 1.54500 * 102.61272 * 78.38475 * 11 9 8 13 13 N 1.47431 * 107.14767 * 22.85028 * 12 11 9 14 14 C 1.36942 * 126.06111 * 181.57650 * 13 12 11 15 15 H 1.07993 * 120.00262 * 190.20494 * 14 13 12 16 16 C 1.38815 * 119.99660 * 10.20741 * 14 13 12 17 17 N 1.31618 * 120.00056 * 12.04652 * 16 14 13 18 18 Si 1.86801 * 119.99733 * 192.05021 * 16 14 13 19 19 H 1.48498 * 109.47147 * 94.93482 * 18 16 14 20 20 H 1.48502 * 109.47047 * 214.93427 * 18 16 14 21 21 H 1.48504 * 109.47197 * 334.93016 * 18 16 14 22 22 C 1.46469 * 107.88178 * 1.61540 * 13 12 11 23 23 H 1.08998 * 108.42715 * 89.91230 * 22 13 12 24 24 C 1.46761 * 121.21873 * 174.51679 * 6 4 2 25 25 C 1.53002 * 109.46845 * 119.99711 * 2 1 3 26 26 F 1.39900 * 109.46859 * 179.97438 * 25 2 1 27 27 F 1.39892 * 109.47157 * 60.00478 * 25 2 1 28 28 F 1.39903 * 109.47248 * 299.99714 * 25 2 1 29 29 H 1.09001 * 109.47141 * 314.62610 * 1 2 3 30 30 H 1.08997 * 109.46881 * 74.62206 * 1 2 3 31 31 H 1.08994 * 109.47281 * 194.62471 * 1 2 3 32 32 H 1.09001 * 109.46839 * 172.91672 * 3 2 1 33 33 H 1.09003 * 109.46731 * 292.91394 * 3 2 1 34 34 H 1.09000 * 109.47290 * 52.91530 * 3 2 1 35 35 H 1.09004 * 109.76713 * 242.32740 * 7 6 4 36 36 H 1.08998 * 109.76029 * 3.08362 * 7 6 4 37 37 H 1.09006 * 109.25664 * 177.62558 * 8 7 6 38 38 H 1.09002 * 109.25574 * 297.09436 * 8 7 6 39 39 H 1.09008 * 110.78176 * 196.66305 * 11 9 8 40 40 H 1.08992 * 110.78538 * 320.10297 * 11 9 8 41 41 H 1.09002 * 109.90371 * 142.22886 * 12 11 9 42 42 H 1.09000 * 109.90454 * 263.29108 * 12 11 9 43 43 H 0.97003 * 119.99703 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.22802 * 352.86111 * 24 6 4 45 45 H 1.09006 * 109.22501 * 112.22243 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7075 -1.7118 -1.1193 6 7 1.7314 -0.2330 -2.4543 7 6 0.8225 0.9118 -2.6242 8 6 1.5721 1.9992 -3.3932 9 6 2.0690 1.4622 -4.7380 10 1 1.2579 1.3019 -5.4484 11 6 3.1333 2.4804 -5.2526 12 6 4.3822 2.1123 -4.4210 13 7 4.2139 0.7160 -3.9787 14 6 5.0830 0.0096 -3.1907 15 1 4.9503 -1.0540 -3.0593 16 6 6.1346 0.6610 -2.5607 17 7 6.1652 1.9762 -2.5215 18 14 7.5062 -0.3293 -1.7686 19 1 8.6319 -0.4702 -2.7268 20 1 7.9802 0.3703 -0.5474 21 1 6.9969 -1.6752 -1.4017 22 6 2.9526 0.2178 -4.5323 23 1 3.1556 -0.2256 -5.5072 24 6 2.3028 -0.8319 -3.6662 25 6 2.0399 -0.7212 1.2493 26 9 3.4389 -0.7217 1.2490 27 9 1.5737 -2.0401 1.2493 28 9 1.5736 -0.0616 2.3916 29 1 -0.3633 0.7219 0.7314 30 1 -0.3633 0.2725 -0.9909 31 1 -0.3633 -0.9943 0.2595 32 1 3.1226 1.4451 0.1267 33 1 1.7838 1.9184 -0.9466 34 1 1.5769 1.9917 0.8198 35 1 -0.0582 0.6028 -3.1872 36 1 0.5219 1.2917 -1.6478 37 1 0.9033 2.8420 -3.5678 38 1 2.4253 2.3337 -2.8030 39 1 3.3216 2.3383 -6.3169 40 1 2.8201 3.5040 -5.0476 41 1 5.2774 2.2011 -5.0366 42 1 4.4598 2.7714 -3.5563 43 1 6.8999 2.4313 -2.0809 44 1 3.0495 -1.5736 -3.3823 45 1 1.5103 -1.3203 -4.2332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042322500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:11 Heat of formation + Delta-G solvation = -140.654593 kcal Electronic energy + Delta-G solvation = -33085.042361 eV Core-core repulsion = 28496.058557 eV Total energy + Delta-G solvation = -4588.983804 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.83111 -47.34903 -47.18289 -40.50423 -38.33871 -35.75190 -34.63089 -32.86364 -31.19144 -29.18151 -28.50956 -27.55511 -26.06607 -24.84614 -24.27668 -22.62687 -21.98072 -20.16683 -19.85483 -18.49498 -18.09717 -17.99496 -17.11111 -16.51168 -16.23530 -15.32441 -15.05549 -14.86389 -14.55916 -14.28847 -14.16545 -14.04880 -13.69310 -13.65690 -13.53198 -13.49032 -13.35990 -13.29697 -12.90145 -12.70176 -12.35552 -12.25488 -12.12229 -11.94124 -11.56848 -11.44490 -11.35315 -11.27673 -10.96553 -10.91233 -10.71823 -10.60200 -10.09659 -9.89020 -9.85388 -9.73309 -9.53982 -9.29349 -8.57790 -8.19855 -6.75513 -5.63639 -3.01803 2.75869 2.93261 3.31130 3.47866 3.54479 3.60163 3.87254 4.20270 4.23926 4.57986 4.67685 4.82382 4.95692 4.98907 5.03096 5.25396 5.32312 5.42676 5.46124 5.49475 5.60599 5.62690 5.67062 5.68025 5.72792 5.88837 5.94086 5.99601 6.09012 6.21439 6.26231 6.28923 6.40906 6.45374 6.56624 6.70940 6.89537 7.02247 7.40772 7.72338 7.74921 7.86302 8.30822 8.48896 9.25111 9.88041 10.52514 11.43111 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.006919 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.938944 B = 4045.830163 C = 5486.290572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.128 4.128 3 C -0.159 4.159 4 C 0.540 3.460 5 O -0.519 6.519 6 N -0.583 5.583 7 C 0.086 3.914 8 C -0.128 4.128 9 C -0.100 4.100 10 H 0.075 0.925 11 C -0.140 4.140 12 C 0.162 3.838 13 N -0.584 5.584 14 C -0.216 4.216 15 H 0.078 0.922 16 C -0.002 4.002 17 N -0.916 5.916 18 Si 0.899 3.101 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.277 1.277 22 C 0.152 3.848 23 H 0.028 0.972 24 C 0.117 3.883 25 C 0.474 3.526 26 F -0.165 7.165 27 F -0.176 7.176 28 F -0.185 7.185 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.249 0.751 44 H 0.096 0.904 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.740 1.555 1.402 15.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.133 4.133 3 C -0.216 4.216 4 C 0.325 3.675 5 O -0.394 6.394 6 N -0.316 5.316 7 C -0.037 4.037 8 C -0.166 4.166 9 C -0.120 4.120 10 H 0.093 0.907 11 C -0.179 4.179 12 C 0.037 3.963 13 N -0.309 5.309 14 C -0.345 4.345 15 H 0.095 0.905 16 C -0.198 4.198 17 N -0.564 5.564 18 Si 0.730 3.270 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.202 1.202 22 C 0.044 3.956 23 H 0.045 0.955 24 C -0.006 4.006 25 C 0.419 3.581 26 F -0.147 7.147 27 F -0.158 7.158 28 F -0.167 7.167 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.059 0.941 44 H 0.114 0.886 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.139 1.013 1.634 15.261 hybrid contribution 0.994 -0.430 0.586 1.232 sum -14.145 0.583 2.220 14.330 Atomic orbital electron populations 1.22320 0.89975 1.04373 1.05291 1.22005 0.99910 0.99470 0.91887 1.22261 1.04117 0.90338 1.04901 1.19318 0.80185 0.84401 0.83573 1.90770 1.37914 1.24985 1.85687 1.47520 1.46183 1.32536 1.05330 1.22294 0.92389 0.87419 1.01582 1.21933 1.00852 0.96695 0.97117 1.22360 0.96717 0.97057 0.95876 0.90656 1.23099 0.97670 0.97744 0.99357 1.21396 0.91804 0.86857 0.96243 1.44313 1.17954 1.10710 1.57931 1.18933 1.03808 0.91125 1.20593 0.90471 1.24683 0.99785 0.95490 0.99881 1.69914 1.32321 1.06011 1.48144 0.86260 0.82493 0.79775 0.78508 1.21892 1.21897 1.20226 1.20683 0.87674 0.92340 0.94943 0.95461 1.21360 0.97555 0.97077 0.84644 1.19800 0.76411 0.77413 0.84428 1.93254 1.28628 1.96215 1.96564 1.93164 1.88400 1.37520 1.96674 1.93139 1.88694 1.80958 1.53909 0.90099 0.88765 0.90845 0.89748 0.88520 0.90739 0.91468 0.88429 0.91900 0.89429 0.92885 0.92209 0.96168 0.91077 0.94061 0.88578 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 7.81 37.16 0.29 -1.45 16 2 C -0.13 -1.94 0.32 -155.66 -0.05 -1.99 16 3 C -0.16 -2.31 7.87 37.16 0.29 -2.02 16 4 C 0.54 10.12 6.26 -10.99 -0.07 10.05 16 5 O -0.52 -11.94 14.32 5.55 0.08 -11.86 16 6 N -0.58 -9.73 2.97 -174.36 -0.52 -10.25 16 7 C 0.09 1.07 4.06 -3.77 -0.02 1.05 16 8 C -0.13 -1.78 4.63 -26.77 -0.12 -1.91 16 9 C -0.10 -1.53 3.68 -88.44 -0.33 -1.85 16 10 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 11 C -0.14 -2.37 6.33 -24.33 -0.15 -2.52 16 12 C 0.16 3.65 4.91 -2.75 -0.01 3.63 16 13 N -0.58 -13.79 3.19 -164.68 -0.53 -14.32 16 14 C -0.22 -5.89 9.54 -15.06 -0.14 -6.04 16 15 H 0.08 2.19 6.71 -52.49 -0.35 1.84 16 16 C 0.00 -0.05 5.40 -17.43 -0.09 -0.15 16 17 N -0.92 -26.29 10.68 55.49 0.59 -25.69 16 18 Si 0.90 23.31 29.57 -169.99 -5.03 18.29 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 20 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 21 H -0.28 -7.31 7.11 56.52 0.40 -6.91 16 22 C 0.15 2.86 2.97 -68.52 -0.20 2.66 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 C 0.12 2.09 5.63 -5.00 -0.03 2.06 16 25 C 0.47 8.07 1.95 37.16 0.07 8.15 16 26 F -0.17 -3.41 15.79 2.25 0.04 -3.37 16 27 F -0.18 -3.10 15.63 2.25 0.04 -3.07 16 28 F -0.19 -2.75 16.65 2.25 0.04 -2.72 16 29 H 0.08 0.69 7.98 -51.93 -0.41 0.28 16 30 H 0.09 0.86 4.75 -51.93 -0.25 0.61 16 31 H 0.07 0.79 7.44 -51.93 -0.39 0.41 16 32 H 0.08 1.53 7.61 -51.93 -0.40 1.14 16 33 H 0.10 1.33 3.72 -51.93 -0.19 1.14 16 34 H 0.07 0.86 7.89 -51.93 -0.41 0.45 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.10 1.04 2.93 -51.93 -0.15 0.89 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.56 5.98 -51.93 -0.31 1.25 16 39 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 40 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 1.80 6.28 -51.93 -0.33 1.48 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.10 2.07 5.63 -51.93 -0.29 1.78 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 341.67 15.07 5.15 5.15 Total: -1.00 -32.16 341.67 -6.69 -38.85 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -5.99 Total: -0.69 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -0.56 Total: 9.68 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.45 Total: -50.26 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 9 Polarization: -9.26 SS G_CDS: 0.11 Total: -9.15 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -5.03 Total: 18.29 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.16 -6.69 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042322500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.807 kcal (2) G-P(sol) polarization free energy of solvation -32.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds