Wall clock time and date at job start Tue Mar 31 2020 17:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 C 1.50698 * 109.47350 * 239.99787 * 2 1 3 5 5 O 1.21283 * 120.00092 * 241.46904 * 4 2 1 6 6 N 1.34778 * 119.99764 * 61.46854 * 4 2 1 7 7 C 1.47148 * 121.22293 * 354.79468 * 6 4 2 8 8 C 1.52835 * 107.97888 * 122.70225 * 7 6 4 9 9 C 1.53090 * 110.58477 * 57.34490 * 8 7 6 10 10 H 1.09009 * 112.49258 * 71.38534 * 9 8 7 11 11 C 1.56023 * 106.39122 * 195.44731 * 9 8 7 12 12 C 1.54500 * 102.61272 * 78.38475 * 11 9 8 13 13 N 1.47431 * 107.14767 * 22.85028 * 12 11 9 14 14 C 1.36942 * 126.06111 * 181.57650 * 13 12 11 15 15 H 1.07993 * 120.00262 * 190.20494 * 14 13 12 16 16 C 1.38815 * 119.99660 * 10.20741 * 14 13 12 17 17 N 1.31618 * 120.00056 * 12.04652 * 16 14 13 18 18 Si 1.86801 * 119.99733 * 192.05021 * 16 14 13 19 19 H 1.48498 * 109.47147 * 94.93482 * 18 16 14 20 20 H 1.48502 * 109.47047 * 214.93427 * 18 16 14 21 21 H 1.48504 * 109.47197 * 334.93016 * 18 16 14 22 22 C 1.46469 * 107.88178 * 1.61540 * 13 12 11 23 23 H 1.08998 * 108.42715 * 89.91230 * 22 13 12 24 24 C 1.46761 * 121.21873 * 174.51679 * 6 4 2 25 25 C 1.53002 * 109.46845 * 119.99711 * 2 1 3 26 26 F 1.39900 * 109.46859 * 179.97438 * 25 2 1 27 27 F 1.39892 * 109.47157 * 60.00478 * 25 2 1 28 28 F 1.39903 * 109.47248 * 299.99714 * 25 2 1 29 29 H 1.09001 * 109.47141 * 314.62610 * 1 2 3 30 30 H 1.08997 * 109.46881 * 74.62206 * 1 2 3 31 31 H 1.08994 * 109.47281 * 194.62471 * 1 2 3 32 32 H 1.09001 * 109.46839 * 172.91672 * 3 2 1 33 33 H 1.09003 * 109.46731 * 292.91394 * 3 2 1 34 34 H 1.09000 * 109.47290 * 52.91530 * 3 2 1 35 35 H 1.09004 * 109.76713 * 242.32740 * 7 6 4 36 36 H 1.08998 * 109.76029 * 3.08362 * 7 6 4 37 37 H 1.09006 * 109.25664 * 177.62558 * 8 7 6 38 38 H 1.09002 * 109.25574 * 297.09436 * 8 7 6 39 39 H 1.09008 * 110.78176 * 196.66305 * 11 9 8 40 40 H 1.08992 * 110.78538 * 320.10297 * 11 9 8 41 41 H 1.09002 * 109.90371 * 142.22886 * 12 11 9 42 42 H 1.09000 * 109.90454 * 263.29108 * 12 11 9 43 43 H 0.97003 * 119.99703 * 179.97438 * 17 16 14 44 44 H 1.09000 * 109.22802 * 352.86111 * 24 6 4 45 45 H 1.09006 * 109.22501 * 112.22243 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7075 -1.7118 -1.1193 6 7 1.7314 -0.2330 -2.4543 7 6 0.8225 0.9118 -2.6242 8 6 1.5721 1.9992 -3.3932 9 6 2.0690 1.4622 -4.7380 10 1 1.2579 1.3019 -5.4484 11 6 3.1333 2.4804 -5.2526 12 6 4.3822 2.1123 -4.4210 13 7 4.2139 0.7160 -3.9787 14 6 5.0830 0.0096 -3.1907 15 1 4.9503 -1.0540 -3.0593 16 6 6.1346 0.6610 -2.5607 17 7 6.1652 1.9762 -2.5215 18 14 7.5062 -0.3293 -1.7686 19 1 8.6319 -0.4702 -2.7268 20 1 7.9802 0.3703 -0.5474 21 1 6.9969 -1.6752 -1.4017 22 6 2.9526 0.2178 -4.5323 23 1 3.1556 -0.2256 -5.5072 24 6 2.3028 -0.8319 -3.6662 25 6 2.0399 -0.7212 1.2493 26 9 3.4389 -0.7217 1.2490 27 9 1.5737 -2.0401 1.2493 28 9 1.5736 -0.0616 2.3916 29 1 -0.3633 0.7219 0.7314 30 1 -0.3633 0.2725 -0.9909 31 1 -0.3633 -0.9943 0.2595 32 1 3.1226 1.4451 0.1267 33 1 1.7838 1.9184 -0.9466 34 1 1.5769 1.9917 0.8198 35 1 -0.0582 0.6028 -3.1872 36 1 0.5219 1.2917 -1.6478 37 1 0.9033 2.8420 -3.5678 38 1 2.4253 2.3337 -2.8030 39 1 3.3216 2.3383 -6.3169 40 1 2.8201 3.5040 -5.0476 41 1 5.2774 2.2011 -5.0366 42 1 4.4598 2.7714 -3.5563 43 1 6.8999 2.4313 -2.0809 44 1 3.0495 -1.5736 -3.3823 45 1 1.5103 -1.3203 -4.2332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042322500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:10 Heat of formation + Delta-G solvation = -161.637547 kcal Electronic energy + Delta-G solvation = -33085.952251 eV Core-core repulsion = 28496.058557 eV Total energy + Delta-G solvation = -4589.893693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.19484 -48.66387 -48.64190 -41.83540 -39.82014 -37.13616 -36.02005 -34.63258 -32.79610 -30.70186 -30.12508 -28.53793 -27.34028 -26.49138 -25.95224 -23.90838 -23.29314 -21.71941 -21.33807 -19.90431 -19.45006 -19.38091 -18.50555 -18.30083 -17.58671 -16.87416 -16.49158 -16.38073 -16.12784 -15.71989 -15.56861 -15.54249 -15.19059 -15.05252 -14.83984 -14.83424 -14.74042 -14.52506 -14.43833 -14.00307 -13.85233 -13.48716 -13.40395 -13.29117 -13.08881 -13.03420 -12.77913 -12.63746 -12.54154 -12.45007 -12.28233 -12.11640 -11.91396 -11.72251 -11.34384 -11.19203 -11.11751 -10.70512 -10.62112 -9.52785 -8.75577 -7.80207 -5.15720 1.32298 1.35836 1.43495 1.44179 1.59316 2.02811 2.46714 2.58390 2.95946 2.98696 3.32660 3.47577 3.62802 3.65165 3.78722 3.88586 3.93527 4.15035 4.28164 4.44143 4.47439 4.51523 4.53036 4.56785 4.63966 4.68764 4.72281 4.78061 4.86284 4.91829 5.03410 5.10082 5.12332 5.18998 5.22601 5.37034 5.51520 5.64421 5.67707 5.75299 5.90015 6.28369 6.44274 7.12381 7.15151 7.84386 8.47648 9.23247 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011297 B = 0.006919 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.938944 B = 4045.830163 C = 5486.290572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.120 4.120 3 C -0.153 4.153 4 C 0.525 3.475 5 O -0.578 6.578 6 N -0.582 5.582 7 C 0.079 3.921 8 C -0.127 4.127 9 C -0.083 4.083 10 H 0.125 0.875 11 C -0.126 4.126 12 C 0.166 3.834 13 N -0.599 5.599 14 C -0.202 4.202 15 H 0.057 0.943 16 C -0.052 4.052 17 N -0.932 5.932 18 Si 0.937 3.063 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.289 1.289 22 C 0.140 3.860 23 H 0.029 0.971 24 C 0.119 3.881 25 C 0.466 3.534 26 F -0.196 7.196 27 F -0.182 7.182 28 F -0.171 7.171 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.042 0.958 39 H 0.065 0.935 40 H 0.084 0.916 41 H -0.021 1.021 42 H 0.039 0.961 43 H 0.242 0.758 44 H 0.047 0.953 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.285 3.035 0.291 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.125 4.125 3 C -0.210 4.210 4 C 0.312 3.688 5 O -0.458 6.458 6 N -0.313 5.313 7 C -0.041 4.041 8 C -0.165 4.165 9 C -0.102 4.102 10 H 0.142 0.858 11 C -0.164 4.164 12 C 0.041 3.959 13 N -0.324 5.324 14 C -0.332 4.332 15 H 0.075 0.925 16 C -0.246 4.246 17 N -0.582 5.582 18 Si 0.769 3.231 19 H -0.213 1.213 20 H -0.222 1.222 21 H -0.215 1.215 22 C 0.033 3.967 23 H 0.046 0.954 24 C -0.005 4.005 25 C 0.411 3.589 26 F -0.177 7.177 27 F -0.163 7.163 28 F -0.152 7.152 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.102 0.898 41 H -0.003 1.003 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.733 2.515 0.487 19.899 hybrid contribution 2.401 -0.950 0.888 2.731 sum -17.332 1.565 1.375 17.457 Atomic orbital electron populations 1.22444 0.85673 1.05546 1.07784 1.22061 1.03049 0.98469 0.88886 1.22263 1.01238 0.90517 1.06999 1.20041 0.79521 0.84049 0.85197 1.90738 1.40566 1.27773 1.86689 1.47693 1.46040 1.33324 1.04229 1.22727 0.92510 0.85418 1.03468 1.21928 1.00278 0.98567 0.95680 1.22418 0.96638 0.93439 0.97703 0.85753 1.22973 0.95026 0.99603 0.98816 1.21220 0.93547 0.85882 0.95259 1.44441 1.19723 1.11150 1.57093 1.18857 1.04185 0.90517 1.19623 0.92524 1.25141 1.01588 0.96239 1.01605 1.70059 1.32383 1.06382 1.49357 0.85650 0.81323 0.78211 0.77931 1.21264 1.22199 1.21515 1.20986 0.86650 0.94633 0.94421 0.95377 1.21233 0.97811 0.95989 0.85432 1.20219 0.75155 0.77611 0.85907 1.93193 1.31376 1.96363 1.96789 1.93144 1.88240 1.38173 1.96789 1.93157 1.88260 1.80507 1.53276 0.86982 0.86375 0.90888 0.94587 0.87374 0.87136 0.86843 0.86336 0.87361 0.93941 0.91640 0.89773 1.00290 0.94339 0.94858 0.93413 0.88577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 7.81 71.98 0.56 -2.14 16 2 C -0.12 -3.48 0.32 -52.93 -0.02 -3.50 16 3 C -0.15 -4.25 7.87 71.98 0.57 -3.68 16 4 C 0.52 19.63 6.26 87.66 0.55 20.18 16 5 O -0.58 -27.93 14.32 -3.04 -0.04 -27.98 16 6 N -0.58 -18.25 2.97 -823.93 -2.44 -20.69 16 7 C 0.08 1.55 4.06 86.20 0.35 1.90 16 8 C -0.13 -2.91 4.63 30.57 0.14 -2.77 16 9 C -0.08 -2.13 3.68 -9.38 -0.03 -2.16 16 10 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 11 C -0.13 -3.87 6.33 32.15 0.20 -3.67 16 12 C 0.17 7.62 4.91 86.71 0.43 8.04 16 13 N -0.60 -28.97 3.19 -674.92 -2.16 -31.12 16 14 C -0.20 -11.56 9.54 84.03 0.80 -10.76 16 15 H 0.06 3.44 6.71 -2.91 -0.02 3.42 16 16 C -0.05 -3.08 5.40 84.86 0.46 -2.62 16 17 N -0.93 -56.25 10.68 21.65 0.23 -56.02 16 18 Si 0.94 50.48 29.57 68.60 2.03 52.51 16 19 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16 20 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 21 H -0.29 -15.96 7.11 99.48 0.71 -15.25 16 22 C 0.14 5.05 2.97 44.62 0.13 5.18 16 23 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 24 C 0.12 4.12 5.63 85.62 0.48 4.60 16 25 C 0.47 15.91 1.95 71.98 0.14 16.05 16 26 F -0.20 -8.53 15.79 44.97 0.71 -7.82 16 27 F -0.18 -6.48 15.63 44.97 0.70 -5.78 16 28 F -0.17 -4.85 16.65 44.97 0.75 -4.10 16 29 H 0.11 1.27 7.98 -2.39 -0.02 1.25 16 30 H 0.12 1.45 4.75 -2.39 -0.01 1.44 16 31 H 0.07 1.32 7.44 -2.39 -0.02 1.30 16 32 H 0.03 1.34 7.61 -2.39 -0.02 1.33 16 33 H 0.11 2.72 3.72 -2.39 -0.01 2.71 16 34 H 0.11 2.21 7.89 -2.39 -0.02 2.19 16 35 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.12 1.85 2.93 -2.39 -0.01 1.84 16 37 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.04 1.41 5.98 -2.39 -0.01 1.39 16 39 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 40 H 0.08 2.22 7.97 -2.39 -0.02 2.20 16 41 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 42 H 0.04 2.02 6.28 -2.39 -0.01 2.01 16 43 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 44 H 0.05 2.14 5.63 -2.39 -0.01 2.12 16 45 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -80.33 341.67 5.57 -74.75 By element: Atomic # 1 Polarization: 0.57 SS G_CDS: 1.03 Total: 1.60 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 4.76 Total: 24.65 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -4.37 Total: -107.83 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.04 Total: -27.98 kcal Atomic # 9 Polarization: -19.86 SS G_CDS: 2.16 Total: -17.70 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.03 Total: 52.51 kcal Total: -80.33 5.57 -74.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042322500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.884 kcal (2) G-P(sol) polarization free energy of solvation -80.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds