Wall clock time and date at job start Tue Mar 31 2020 17:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.50692 * 109.47732 * 120.00379 * 2 1 3 5 5 O 1.21286 * 120.00602 * 125.42100 * 4 2 1 6 6 N 1.34783 * 119.99659 * 305.42362 * 4 2 1 7 7 C 1.47140 * 121.20884 * 355.27098 * 6 4 2 8 8 C 1.52840 * 107.94253 * 237.33368 * 7 6 4 9 9 C 1.53090 * 110.57692 * 302.63523 * 8 7 6 10 10 H 1.09001 * 113.06374 * 288.99410 * 9 8 7 11 11 C 1.56030 * 106.38646 * 164.57166 * 9 8 7 12 12 C 1.54509 * 102.60823 * 281.63102 * 11 9 8 13 13 N 1.47436 * 107.14565 * 337.14487 * 12 11 9 14 14 C 1.36934 * 126.05624 * 178.42792 * 13 12 11 15 15 H 1.08003 * 119.99620 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00421 * 359.94927 * 14 13 12 17 17 N 1.31621 * 120.00105 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00289 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46972 * 59.99626 * 18 16 14 20 20 H 1.48501 * 109.47398 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46929 * 300.00034 * 18 16 14 22 22 C 1.46465 * 107.88132 * 358.38157 * 13 12 11 23 23 H 1.08997 * 107.86482 * 270.36740 * 22 13 12 24 24 C 1.46763 * 121.21396 * 175.24904 * 6 4 2 25 25 C 1.53002 * 109.46798 * 240.00241 * 2 1 3 26 26 F 1.39902 * 109.47457 * 299.99499 * 25 2 1 27 27 F 1.39909 * 109.47229 * 60.00066 * 25 2 1 28 28 F 1.39903 * 109.47358 * 179.97438 * 25 2 1 29 29 H 1.08998 * 109.47249 * 304.99322 * 1 2 3 30 30 H 1.08998 * 109.47279 * 64.99989 * 1 2 3 31 31 H 1.09007 * 109.47024 * 184.99991 * 1 2 3 32 32 H 1.08993 * 109.47551 * 175.04106 * 3 2 1 33 33 H 1.09005 * 109.47051 * 295.04286 * 3 2 1 34 34 H 1.09002 * 109.46868 * 55.03973 * 3 2 1 35 35 H 1.09004 * 109.79231 * 117.71635 * 7 6 4 36 36 H 1.08993 * 109.75796 * 356.93509 * 7 6 4 37 37 H 1.09002 * 109.25224 * 182.35460 * 8 7 6 38 38 H 1.08997 * 109.22732 * 62.90363 * 8 7 6 39 39 H 1.08999 * 110.78617 * 39.90474 * 11 9 8 40 40 H 1.09004 * 110.78517 * 163.16199 * 11 9 8 41 41 H 1.08997 * 109.90005 * 96.52833 * 12 11 9 42 42 H 1.09001 * 109.90103 * 217.58363 * 12 11 9 43 43 H 0.96999 * 120.00366 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.23123 * 7.12261 * 24 6 4 45 45 H 1.09007 * 109.22359 * 247.71507 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.8086 -1.6361 1.1217 6 7 1.6193 -0.3172 2.4515 7 6 0.7604 0.8654 2.6216 8 6 1.4758 1.8356 3.5613 9 6 1.7851 1.1591 4.8993 10 1 0.8958 0.9834 5.5047 11 6 2.8375 2.0612 5.6158 12 6 4.1514 1.6831 4.8961 13 7 3.9587 0.3416 4.3158 14 6 4.8724 -0.3519 3.5679 15 1 4.6273 -1.3335 3.1899 16 6 6.1135 0.2068 3.2952 17 7 6.4120 1.4034 3.7550 18 14 7.3602 -0.7396 2.2755 19 1 6.7906 -1.0208 0.9333 20 1 8.5968 0.0696 2.1295 21 1 7.6845 -2.0202 2.9539 22 6 2.6172 -0.1184 4.6819 23 1 2.6926 -0.6463 5.6326 24 6 2.0092 -1.0532 3.6599 25 6 2.0399 -0.7212 -1.2493 26 9 1.5737 -2.0403 -1.2494 27 9 1.5735 -0.0616 -2.3916 28 9 3.4389 -0.7208 -1.2497 29 1 -0.3634 0.5893 0.8419 30 1 -0.3634 0.4343 -0.9314 31 1 -0.3633 -1.0238 0.0896 32 1 3.1263 1.4438 0.0888 33 1 1.7510 1.9300 -0.9311 34 1 1.6059 1.9813 0.8423 35 1 -0.1945 0.5687 3.0554 36 1 0.5948 1.3425 1.6557 37 1 0.8386 2.7026 3.7357 38 1 2.4076 2.1615 3.0993 39 1 2.6062 3.1162 5.4694 40 1 2.8924 1.8225 6.6779 41 1 4.3615 2.4030 4.1051 42 1 4.9744 1.6666 5.6107 43 1 7.2794 1.7937 3.5648 44 1 2.7386 -1.8183 3.3945 45 1 1.1283 -1.5305 4.0893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042322502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:17 Heat of formation + Delta-G solvation = -138.772995 kcal Electronic energy + Delta-G solvation = -32904.065815 eV Core-core repulsion = 28315.163603 eV Total energy + Delta-G solvation = -4588.902212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.91295 -47.43684 -47.25766 -40.50899 -38.35426 -35.79280 -34.67313 -32.85192 -31.16198 -29.15314 -28.48718 -27.63563 -26.18852 -24.85917 -24.27950 -22.66338 -21.99516 -20.17369 -19.84883 -18.58084 -18.14253 -18.06582 -17.16000 -16.51373 -16.30250 -15.35747 -15.09423 -14.90957 -14.55192 -14.35695 -14.09762 -14.08179 -13.77220 -13.68766 -13.63336 -13.55773 -13.43890 -13.38943 -12.89385 -12.66968 -12.40827 -12.37475 -12.20757 -11.92921 -11.59080 -11.51801 -11.39338 -11.34249 -10.96273 -10.86529 -10.75443 -10.57876 -10.11485 -9.88946 -9.84448 -9.68031 -9.48369 -9.32516 -8.50579 -8.22249 -6.75657 -5.62363 -2.94357 2.69713 2.86150 3.25906 3.52510 3.54729 3.63009 3.78610 4.13872 4.15040 4.57749 4.61923 4.73210 4.89359 4.90641 5.03330 5.24223 5.27550 5.36471 5.39501 5.45737 5.55038 5.56813 5.60916 5.69520 5.69754 5.87696 5.92016 5.97178 6.08223 6.13984 6.21041 6.27243 6.40043 6.42106 6.59007 6.69611 6.87633 7.01187 7.61219 7.64796 7.71427 7.92941 8.31569 8.45625 9.31323 9.92098 10.55475 11.49741 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.006551 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.503091 B = 4273.334418 C = 5753.594413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.129 4.129 3 C -0.159 4.159 4 C 0.534 3.466 5 O -0.513 6.513 6 N -0.583 5.583 7 C 0.085 3.915 8 C -0.125 4.125 9 C -0.101 4.101 10 H 0.076 0.924 11 C -0.144 4.144 12 C 0.179 3.821 13 N -0.588 5.588 14 C -0.213 4.213 15 H 0.081 0.919 16 C -0.006 4.006 17 N -0.926 5.926 18 Si 0.902 3.098 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.286 1.286 22 C 0.153 3.847 23 H 0.028 0.972 24 C 0.115 3.885 25 C 0.475 3.525 26 F -0.176 7.176 27 F -0.185 7.185 28 F -0.165 7.165 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.249 0.751 44 H 0.097 0.903 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.750 2.458 -4.253 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.134 4.134 3 C -0.215 4.215 4 C 0.319 3.681 5 O -0.387 6.387 6 N -0.315 5.315 7 C -0.037 4.037 8 C -0.163 4.163 9 C -0.121 4.121 10 H 0.094 0.906 11 C -0.182 4.182 12 C 0.054 3.946 13 N -0.313 5.313 14 C -0.341 4.341 15 H 0.099 0.901 16 C -0.202 4.202 17 N -0.575 5.575 18 Si 0.733 3.267 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.213 1.213 22 C 0.045 3.955 23 H 0.045 0.955 24 C -0.008 4.008 25 C 0.420 3.580 26 F -0.158 7.158 27 F -0.167 7.167 28 F -0.146 7.146 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.115 0.885 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.046 1.950 -4.426 16.759 hybrid contribution 0.909 -0.450 -0.689 1.226 sum -15.137 1.499 -5.114 16.048 Atomic orbital electron populations 1.22302 0.89858 1.04658 1.05057 1.22015 1.00075 0.99292 0.91995 1.22204 1.04227 0.90701 1.04404 1.19363 0.81109 0.83974 0.83628 1.90797 1.32793 1.29575 1.85581 1.47532 1.49824 1.28733 1.05460 1.22374 0.93316 0.86958 1.01094 1.21871 1.01558 0.97007 0.95845 1.22356 0.97165 0.96914 0.95631 0.90610 1.23173 0.97938 0.98153 0.98977 1.21205 0.91127 0.86793 0.95471 1.44280 1.09671 1.16435 1.60947 1.18988 0.92616 0.98885 1.23646 0.90087 1.24671 0.97774 0.96840 1.00879 1.69944 1.21968 1.15605 1.49952 0.86322 0.80735 0.78804 0.80871 1.20751 1.21914 1.21317 1.20718 0.87227 0.92764 0.94836 0.95524 1.21461 0.99164 0.95711 0.84505 1.19781 0.76414 0.77440 0.84361 1.93173 1.88426 1.37496 1.96682 1.93137 1.88696 1.80941 1.53908 1.93258 1.28578 1.96223 1.96564 0.88570 0.90335 0.90801 0.89840 0.90469 0.88792 0.91480 0.88351 0.91875 0.89886 0.92333 0.92751 0.93736 0.94144 0.94037 0.88523 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 7.84 37.16 0.29 -1.32 16 2 C -0.13 -1.84 0.32 -155.67 -0.05 -1.89 16 3 C -0.16 -2.07 7.94 37.16 0.30 -1.77 16 4 C 0.53 9.70 6.26 -10.99 -0.07 9.63 16 5 O -0.51 -11.68 14.31 5.55 0.08 -11.60 16 6 N -0.58 -9.45 2.96 -174.09 -0.51 -9.97 16 7 C 0.08 1.02 4.24 -3.77 -0.02 1.00 16 8 C -0.12 -1.71 4.85 -26.77 -0.13 -1.84 16 9 C -0.10 -1.54 3.68 -88.43 -0.33 -1.86 16 10 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.14 -2.47 6.33 -24.32 -0.15 -2.62 16 12 C 0.18 4.11 4.61 -2.74 -0.01 4.10 16 13 N -0.59 -14.09 3.20 -164.42 -0.53 -14.62 16 14 C -0.21 -5.90 9.70 -15.06 -0.15 -6.04 16 15 H 0.08 2.32 6.51 -52.48 -0.34 1.97 16 16 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 17 N -0.93 -27.26 10.38 55.49 0.58 -26.68 16 18 Si 0.90 23.71 29.55 -169.99 -5.02 18.69 16 19 H -0.28 -7.61 7.11 56.52 0.40 -7.20 16 20 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 C 0.15 2.90 2.97 -68.30 -0.20 2.70 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 C 0.11 2.02 5.69 -4.77 -0.03 2.00 16 25 C 0.47 7.66 1.96 37.16 0.07 7.73 16 26 F -0.18 -2.98 16.11 2.25 0.04 -2.94 16 27 F -0.19 -2.58 16.11 2.25 0.04 -2.54 16 28 F -0.17 -3.24 15.85 2.25 0.04 -3.20 16 29 H 0.10 0.77 4.64 -51.93 -0.24 0.53 16 30 H 0.08 0.65 7.66 -51.93 -0.40 0.25 16 31 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 32 H 0.08 1.37 7.94 -51.93 -0.41 0.95 16 33 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 34 H 0.09 1.07 4.86 -51.93 -0.25 0.82 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.99 2.35 -51.93 -0.12 0.87 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.45 6.85 -51.93 -0.36 1.10 16 39 H 0.06 0.90 7.97 -51.93 -0.41 0.49 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 1.14 7.04 -51.93 -0.37 0.78 16 42 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.10 2.05 5.53 -51.93 -0.29 1.76 16 45 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -33.05 343.35 -6.76 -39.81 By element: Atomic # 1 Polarization: 4.42 SS G_CDS: -6.06 Total: -1.65 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -0.57 Total: 9.54 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.46 Total: -51.27 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 9 Polarization: -8.80 SS G_CDS: 0.11 Total: -8.69 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.02 Total: 18.69 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.05 -6.76 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042322502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.966 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds