Wall clock time and date at job start Tue Mar 31 2020 17:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47237 * 2 1 4 4 C 1.50692 * 109.47732 * 120.00379 * 2 1 3 5 5 O 1.21286 * 120.00602 * 125.42100 * 4 2 1 6 6 N 1.34783 * 119.99659 * 305.42362 * 4 2 1 7 7 C 1.47140 * 121.20884 * 355.27098 * 6 4 2 8 8 C 1.52840 * 107.94253 * 237.33368 * 7 6 4 9 9 C 1.53090 * 110.57692 * 302.63523 * 8 7 6 10 10 H 1.09001 * 113.06374 * 288.99410 * 9 8 7 11 11 C 1.56030 * 106.38646 * 164.57166 * 9 8 7 12 12 C 1.54509 * 102.60823 * 281.63102 * 11 9 8 13 13 N 1.47436 * 107.14565 * 337.14487 * 12 11 9 14 14 C 1.36934 * 126.05624 * 178.42792 * 13 12 11 15 15 H 1.08003 * 119.99620 * 179.97438 * 14 13 12 16 16 C 1.38809 * 120.00421 * 359.94927 * 14 13 12 17 17 N 1.31621 * 120.00105 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00289 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46972 * 59.99626 * 18 16 14 20 20 H 1.48501 * 109.47398 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46929 * 300.00034 * 18 16 14 22 22 C 1.46465 * 107.88132 * 358.38157 * 13 12 11 23 23 H 1.08997 * 107.86482 * 270.36740 * 22 13 12 24 24 C 1.46763 * 121.21396 * 175.24904 * 6 4 2 25 25 C 1.53002 * 109.46798 * 240.00241 * 2 1 3 26 26 F 1.39902 * 109.47457 * 299.99499 * 25 2 1 27 27 F 1.39909 * 109.47229 * 60.00066 * 25 2 1 28 28 F 1.39903 * 109.47358 * 179.97438 * 25 2 1 29 29 H 1.08998 * 109.47249 * 304.99322 * 1 2 3 30 30 H 1.08998 * 109.47279 * 64.99989 * 1 2 3 31 31 H 1.09007 * 109.47024 * 184.99991 * 1 2 3 32 32 H 1.08993 * 109.47551 * 175.04106 * 3 2 1 33 33 H 1.09005 * 109.47051 * 295.04286 * 3 2 1 34 34 H 1.09002 * 109.46868 * 55.03973 * 3 2 1 35 35 H 1.09004 * 109.79231 * 117.71635 * 7 6 4 36 36 H 1.08993 * 109.75796 * 356.93509 * 7 6 4 37 37 H 1.09002 * 109.25224 * 182.35460 * 8 7 6 38 38 H 1.08997 * 109.22732 * 62.90363 * 8 7 6 39 39 H 1.08999 * 110.78617 * 39.90474 * 11 9 8 40 40 H 1.09004 * 110.78517 * 163.16199 * 11 9 8 41 41 H 1.08997 * 109.90005 * 96.52833 * 12 11 9 42 42 H 1.09001 * 109.90103 * 217.58363 * 12 11 9 43 43 H 0.96999 * 120.00366 * 179.97438 * 17 16 14 44 44 H 1.08997 * 109.23123 * 7.12261 * 24 6 4 45 45 H 1.09007 * 109.22359 * 247.71507 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 8 2.8086 -1.6361 1.1217 6 7 1.6193 -0.3172 2.4515 7 6 0.7604 0.8654 2.6216 8 6 1.4758 1.8356 3.5613 9 6 1.7851 1.1591 4.8993 10 1 0.8958 0.9834 5.5047 11 6 2.8375 2.0612 5.6158 12 6 4.1514 1.6831 4.8961 13 7 3.9587 0.3416 4.3158 14 6 4.8724 -0.3519 3.5679 15 1 4.6273 -1.3335 3.1899 16 6 6.1135 0.2068 3.2952 17 7 6.4120 1.4034 3.7550 18 14 7.3602 -0.7396 2.2755 19 1 6.7906 -1.0208 0.9333 20 1 8.5968 0.0696 2.1295 21 1 7.6845 -2.0202 2.9539 22 6 2.6172 -0.1184 4.6819 23 1 2.6926 -0.6463 5.6326 24 6 2.0092 -1.0532 3.6599 25 6 2.0399 -0.7212 -1.2493 26 9 1.5737 -2.0403 -1.2494 27 9 1.5735 -0.0616 -2.3916 28 9 3.4389 -0.7208 -1.2497 29 1 -0.3634 0.5893 0.8419 30 1 -0.3634 0.4343 -0.9314 31 1 -0.3633 -1.0238 0.0896 32 1 3.1263 1.4438 0.0888 33 1 1.7510 1.9300 -0.9311 34 1 1.6059 1.9813 0.8423 35 1 -0.1945 0.5687 3.0554 36 1 0.5948 1.3425 1.6557 37 1 0.8386 2.7026 3.7357 38 1 2.4076 2.1615 3.0993 39 1 2.6062 3.1162 5.4694 40 1 2.8924 1.8225 6.6779 41 1 4.3615 2.4030 4.1051 42 1 4.9744 1.6666 5.6107 43 1 7.2794 1.7937 3.5648 44 1 2.7386 -1.8183 3.3945 45 1 1.1283 -1.5305 4.0893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042322502.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:16 Heat of formation + Delta-G solvation = -160.695920 kcal Electronic energy + Delta-G solvation = -32905.016464 eV Core-core repulsion = 28315.163603 eV Total energy + Delta-G solvation = -4589.852861 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.20154 -48.67453 -48.64648 -41.80955 -39.82736 -37.13095 -36.03834 -34.63557 -32.77304 -30.66922 -30.12284 -28.53585 -27.38320 -26.50233 -25.96388 -23.93704 -23.26217 -21.71548 -21.32914 -19.96299 -19.43982 -19.38674 -18.50083 -18.31419 -17.60164 -16.90400 -16.50284 -16.35778 -16.06860 -15.73131 -15.56521 -15.50660 -15.21335 -15.06137 -14.89017 -14.83286 -14.74797 -14.59383 -14.39804 -13.96308 -13.87654 -13.48890 -13.37022 -13.28402 -13.14239 -13.00520 -12.85720 -12.65013 -12.59662 -12.47848 -12.27974 -12.11503 -11.93761 -11.64856 -11.34032 -11.22018 -11.07713 -10.67125 -10.61897 -9.52888 -8.78413 -7.84220 -5.12425 1.32422 1.35778 1.44030 1.47611 1.53872 2.01639 2.46682 2.57381 2.94750 2.98074 3.34772 3.46126 3.62124 3.63341 3.76885 3.87032 3.93109 4.14230 4.26627 4.37457 4.48373 4.49344 4.53818 4.57472 4.62541 4.68160 4.72333 4.76888 4.84490 4.92306 5.03593 5.08135 5.15698 5.18272 5.21329 5.35692 5.55747 5.66060 5.71104 5.76403 5.85349 6.24709 6.44313 7.13320 7.17048 7.85239 8.47079 9.25966 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011584 B = 0.006551 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.503091 B = 4273.334418 C = 5753.594413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.121 4.121 3 C -0.155 4.155 4 C 0.520 3.480 5 O -0.576 6.576 6 N -0.582 5.582 7 C 0.079 3.921 8 C -0.124 4.124 9 C -0.082 4.082 10 H 0.126 0.874 11 C -0.130 4.130 12 C 0.185 3.815 13 N -0.604 5.604 14 C -0.197 4.197 15 H 0.064 0.936 16 C -0.060 4.060 17 N -0.946 5.946 18 Si 0.944 3.056 19 H -0.298 1.298 20 H -0.289 1.289 21 H -0.283 1.283 22 C 0.140 3.860 23 H 0.025 0.975 24 C 0.117 3.883 25 C 0.466 3.534 26 F -0.184 7.184 27 F -0.170 7.170 28 F -0.195 7.195 29 H 0.125 0.875 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.009 0.991 42 H -0.006 1.006 43 H 0.242 0.758 44 H 0.049 0.951 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.568 3.963 -3.672 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.125 4.125 3 C -0.211 4.211 4 C 0.307 3.693 5 O -0.455 6.455 6 N -0.313 5.313 7 C -0.041 4.041 8 C -0.162 4.162 9 C -0.101 4.101 10 H 0.144 0.856 11 C -0.168 4.168 12 C 0.060 3.940 13 N -0.329 5.329 14 C -0.327 4.327 15 H 0.082 0.918 16 C -0.253 4.253 17 N -0.597 5.597 18 Si 0.776 3.224 19 H -0.226 1.226 20 H -0.214 1.214 21 H -0.209 1.209 22 C 0.033 3.967 23 H 0.043 0.957 24 C -0.006 4.006 25 C 0.411 3.589 26 F -0.165 7.165 27 F -0.151 7.151 28 F -0.176 7.176 29 H 0.144 0.856 30 H 0.122 0.878 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.126 0.874 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.128 0.872 38 H 0.055 0.945 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.027 0.973 42 H 0.013 0.987 43 H 0.051 0.949 44 H 0.067 0.933 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -20.923 3.473 -3.815 21.550 hybrid contribution 2.374 -0.978 -0.849 2.704 sum -18.549 2.495 -4.664 19.289 Atomic orbital electron populations 1.22420 0.85669 1.05502 1.07713 1.22075 1.03096 0.98593 0.88777 1.22237 1.01411 0.90451 1.07013 1.20128 0.80353 0.83518 0.85306 1.90766 1.35595 1.32505 1.86644 1.47706 1.49578 1.29645 1.04328 1.22804 0.93943 0.84947 1.02396 1.21879 1.00615 0.98881 0.94816 1.22423 0.97400 0.93352 0.96961 0.85633 1.23032 0.94793 1.00104 0.98884 1.20969 0.93528 0.85737 0.93717 1.44444 1.11573 1.16735 1.60129 1.18990 0.93185 0.98241 1.22241 0.91799 1.25175 0.99416 0.97859 1.02839 1.70107 1.21694 1.16415 1.51490 0.85648 0.79553 0.78205 0.79041 1.22567 1.21440 1.20928 1.21063 0.85559 0.95294 0.94761 0.95741 1.21325 0.99724 0.94634 0.84949 1.20211 0.75190 0.77582 0.85872 1.93151 1.88288 1.38270 1.96805 1.93157 1.88262 1.80466 1.53249 1.93199 1.31267 1.96361 1.96787 0.85650 0.87850 0.90970 0.94355 0.87434 0.86591 0.86681 0.86202 0.87244 0.94466 0.89808 0.91659 0.97299 0.98731 0.94900 0.93280 0.88156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 7.84 71.98 0.56 -1.86 16 2 C -0.12 -3.25 0.32 -52.93 -0.02 -3.27 16 3 C -0.15 -3.77 7.94 71.98 0.57 -3.19 16 4 C 0.52 18.79 6.26 87.65 0.55 19.34 16 5 O -0.58 -27.58 14.31 -3.05 -0.04 -27.63 16 6 N -0.58 -17.59 2.96 -823.10 -2.43 -20.02 16 7 C 0.08 1.46 4.24 86.20 0.37 1.82 16 8 C -0.12 -2.78 4.85 30.57 0.15 -2.64 16 9 C -0.08 -2.11 3.68 -9.37 -0.03 -2.15 16 10 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 11 C -0.13 -4.08 6.33 32.16 0.20 -3.88 16 12 C 0.19 8.75 4.61 86.71 0.40 9.15 16 13 N -0.60 -29.71 3.20 -674.10 -2.15 -31.86 16 14 C -0.20 -11.44 9.70 84.03 0.81 -10.63 16 15 H 0.06 3.91 6.51 -2.91 -0.02 3.89 16 16 C -0.06 -3.66 5.49 84.86 0.47 -3.19 16 17 N -0.95 -58.77 10.38 21.65 0.22 -58.55 16 18 Si 0.94 51.53 29.55 68.60 2.03 53.55 16 19 H -0.30 -16.93 7.11 99.48 0.71 -16.22 16 20 H -0.29 -15.38 7.11 99.48 0.71 -14.67 16 21 H -0.28 -15.04 7.11 99.48 0.71 -14.33 16 22 C 0.14 5.09 2.97 44.77 0.13 5.22 16 23 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 24 C 0.12 3.98 5.69 85.76 0.49 4.46 16 25 C 0.47 14.99 1.96 71.98 0.14 15.13 16 26 F -0.18 -6.26 16.11 44.97 0.72 -5.53 16 27 F -0.17 -4.47 16.11 44.97 0.72 -3.74 16 28 F -0.19 -8.06 15.85 44.97 0.71 -7.35 16 29 H 0.13 1.18 4.64 -2.39 -0.01 1.17 16 30 H 0.10 1.15 7.66 -2.39 -0.02 1.14 16 31 H 0.07 1.20 7.94 -2.38 -0.02 1.18 16 32 H 0.04 1.28 7.94 -2.39 -0.02 1.27 16 33 H 0.11 1.94 7.67 -2.38 -0.02 1.93 16 34 H 0.12 2.25 4.86 -2.39 -0.01 2.23 16 35 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.12 1.69 2.35 -2.39 -0.01 1.69 16 37 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.04 1.21 6.85 -2.39 -0.02 1.19 16 39 H 0.08 2.25 7.97 -2.39 -0.02 2.23 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.01 0.47 7.04 -2.39 -0.02 0.46 16 42 H -0.01 -0.31 7.57 -2.39 -0.02 -0.33 16 43 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 44 H 0.05 2.15 5.53 -2.39 -0.01 2.14 16 45 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -83.13 343.35 5.60 -77.53 By element: Atomic # 1 Polarization: -1.75 SS G_CDS: 1.03 Total: -0.72 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: 4.79 Total: 24.33 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.36 Total: -110.43 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.04 Total: -27.63 kcal Atomic # 9 Polarization: -18.78 SS G_CDS: 2.16 Total: -16.62 kcal Atomic # 14 Polarization: 51.53 SS G_CDS: 2.03 Total: 53.55 kcal Total: -83.13 5.60 -77.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042322502.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.170 kcal (2) G-P(sol) polarization free energy of solvation -83.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds