Wall clock time and date at job start Tue Mar 31 2020 17:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 C 1.50689 * 109.47386 * 239.99747 * 2 1 3 5 5 O 1.21290 * 120.00192 * 248.50736 * 4 2 1 6 6 N 1.34782 * 120.00189 * 68.50396 * 4 2 1 7 7 C 1.46797 * 119.57425 * 354.07652 * 6 4 2 8 8 C 1.53466 * 107.59495 * 232.05251 * 7 6 4 9 9 C 1.52729 * 108.44150 * 301.92343 * 8 7 6 10 10 C 1.53018 * 110.80691 * 63.76054 * 9 8 7 11 11 H 1.08999 * 111.38307 * 69.72978 * 10 9 8 12 12 C 1.45114 * 119.57976 * 173.80081 * 6 4 2 13 13 H 1.09006 * 109.97075 * 11.93319 * 12 6 4 14 14 C 1.54416 * 111.60832 * 248.64832 * 12 6 4 15 15 C 1.54574 * 102.44942 * 203.41875 * 14 12 6 16 16 N 1.48215 * 107.11576 * 191.93249 * 10 9 8 17 17 C 1.36933 * 125.76646 * 270.86074 * 16 10 9 18 18 H 1.07998 * 120.00468 * 0.02562 * 17 16 10 19 19 C 1.38813 * 119.99722 * 180.02562 * 17 16 10 20 20 N 1.31618 * 120.00210 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47410 * 89.99980 * 21 19 17 23 23 H 1.48501 * 109.47133 * 210.00006 * 21 19 17 24 24 H 1.48505 * 109.47429 * 329.99880 * 21 19 17 25 25 C 1.53003 * 109.47124 * 119.99203 * 2 1 3 26 26 F 1.39903 * 109.46732 * 60.00742 * 25 2 1 27 27 F 1.39897 * 109.46896 * 180.02562 * 25 2 1 28 28 F 1.39897 * 109.47489 * 300.00601 * 25 2 1 29 29 H 1.09000 * 109.47112 * 195.78615 * 1 2 3 30 30 H 1.08998 * 109.47032 * 75.78375 * 1 2 3 31 31 H 1.09003 * 109.47432 * 315.77528 * 1 2 3 32 32 H 1.08996 * 109.47149 * 70.18971 * 3 2 1 33 33 H 1.08995 * 109.47298 * 190.19369 * 3 2 1 34 34 H 1.09008 * 109.46984 * 310.19131 * 3 2 1 35 35 H 1.09001 * 109.83403 * 351.57443 * 7 6 4 36 36 H 1.08997 * 109.83715 * 112.52943 * 7 6 4 37 37 H 1.09007 * 109.63744 * 61.60169 * 8 7 6 38 38 H 1.08995 * 109.64348 * 182.23216 * 8 7 6 39 39 H 1.09001 * 109.21540 * 184.10685 * 9 8 7 40 40 H 1.09003 * 109.21137 * 303.46560 * 9 8 7 41 41 H 1.08997 * 110.81510 * 321.65565 * 14 12 6 42 42 H 1.09002 * 110.81535 * 85.17927 * 14 12 6 43 43 H 1.08998 * 109.88824 * 141.08594 * 15 14 12 44 44 H 1.08999 * 109.88279 * 262.10429 * 15 14 12 45 45 H 0.96994 * 120.00101 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.5974 -1.7785 -1.1257 6 7 1.8538 -0.1589 -2.4471 7 6 1.0562 1.0666 -2.5772 8 6 -0.0071 0.8159 -3.6550 9 6 0.7016 0.4394 -4.9545 10 6 1.4673 -0.8757 -4.7946 11 1 0.7875 -1.7224 -4.6996 12 6 2.4574 -0.7808 -3.6110 13 1 2.8274 -1.7732 -3.3531 14 6 3.5903 0.0893 -4.1974 15 6 3.6553 -0.3928 -5.6646 16 7 2.3472 -1.0149 -5.9792 17 6 2.0067 -1.6125 -7.1633 18 1 1.0205 -2.0337 -7.2917 19 6 2.9291 -1.6771 -8.1986 20 7 4.1308 -1.1634 -8.0423 21 14 2.4645 -2.4917 -9.8140 22 1 1.8805 -1.4786 -10.7294 23 1 3.6763 -3.0819 -10.4373 24 1 1.4672 -3.5624 -9.5598 25 6 2.0400 -0.7211 1.2494 26 9 1.5738 -2.0401 1.2494 27 9 3.4390 -0.7206 1.2496 28 9 1.5736 -0.0616 2.3916 29 1 -0.3633 -0.9889 0.2796 30 1 -0.3633 0.2524 -0.9962 31 1 -0.3634 0.7364 0.7168 32 1 1.8327 1.9012 0.9668 33 1 3.1146 1.4480 -0.1819 34 1 1.5358 2.0062 -0.7851 35 1 0.5731 1.2960 -1.6274 36 1 1.6978 1.8954 -2.8763 37 1 -0.6591 -0.0002 -3.3435 38 1 -0.5951 1.7210 -3.8072 39 1 -0.0380 0.3297 -5.7476 40 1 1.4013 1.2306 -5.2237 41 1 3.3313 1.1469 -4.1484 42 1 4.5323 -0.1040 -3.6842 43 1 3.8320 0.4554 -6.3261 44 1 4.4546 -1.1249 -5.7792 45 1 4.7755 -1.2089 -8.7656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049855981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:56 Heat of formation + Delta-G solvation = -140.388594 kcal Electronic energy + Delta-G solvation = -31816.143162 eV Core-core repulsion = 27227.170892 eV Total energy + Delta-G solvation = -4588.972270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.18432 -47.68578 -47.55912 -40.95948 -38.28743 -36.23315 -34.80639 -32.53240 -32.11672 -29.08352 -28.38937 -27.91755 -26.45052 -25.23921 -24.32800 -22.62801 -22.10223 -20.47213 -20.05351 -18.70745 -18.40281 -18.17737 -17.38604 -16.92979 -16.73841 -15.57579 -15.34517 -14.86671 -14.67036 -14.55376 -14.45631 -14.28429 -14.08975 -13.99743 -13.80641 -13.71306 -13.67967 -13.35214 -13.16734 -12.77440 -12.67969 -12.52157 -12.38395 -12.06758 -12.01480 -11.76258 -11.55413 -11.35626 -11.06209 -10.90931 -10.81958 -10.66744 -10.46592 -10.17213 -10.10495 -9.69693 -9.68058 -9.58759 -8.66959 -8.41252 -6.90153 -5.74102 -3.08136 2.37465 2.48936 2.93044 3.38592 3.44115 3.45937 3.51200 3.83469 3.85176 4.28588 4.45776 4.46410 4.58683 4.75387 4.95890 5.03848 5.09349 5.17473 5.20457 5.27701 5.30806 5.38292 5.48629 5.54278 5.57771 5.66484 5.71277 5.78937 5.88488 6.03146 6.12729 6.23614 6.27934 6.43500 6.50221 6.64476 6.86680 6.98656 7.39240 7.50732 7.55853 7.78287 8.06221 8.18906 9.15708 9.76539 10.42312 11.37542 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.003337 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.698097 B = 8389.965421 C = 8695.164424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.131 4.131 3 C -0.166 4.166 4 C 0.523 3.477 5 O -0.522 6.522 6 N -0.581 5.581 7 C 0.081 3.919 8 C -0.135 4.135 9 C -0.130 4.130 10 C 0.157 3.843 11 H 0.061 0.939 12 C 0.131 3.869 13 H 0.104 0.896 14 C -0.151 4.151 15 C 0.180 3.820 16 N -0.599 5.599 17 C -0.227 4.227 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.476 3.524 26 F -0.170 7.170 27 F -0.174 7.174 28 F -0.182 7.182 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.053 0.947 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 8.744 17.917 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.136 4.136 3 C -0.223 4.223 4 C 0.308 3.692 5 O -0.397 6.397 6 N -0.312 5.312 7 C -0.041 4.041 8 C -0.174 4.174 9 C -0.171 4.171 10 C 0.048 3.952 11 H 0.079 0.921 12 C 0.027 3.973 13 H 0.122 0.878 14 C -0.190 4.190 15 C 0.055 3.945 16 N -0.323 5.323 17 C -0.355 4.355 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.421 3.579 26 F -0.151 7.151 27 F -0.155 7.155 28 F -0.164 7.164 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.518 8.074 17.726 20.878 hybrid contribution -0.058 -0.417 -0.748 0.859 sum -7.576 7.657 16.977 20.106 Atomic orbital electron populations 1.22205 0.89229 1.04894 1.05380 1.22055 1.00746 0.98975 0.91809 1.22414 1.03517 0.91127 1.05231 1.19685 0.80077 0.85379 0.84075 1.90802 1.42387 1.20761 1.85785 1.47421 1.50970 1.26583 1.06195 1.22589 0.93712 0.87147 1.00680 1.21973 0.97340 1.01584 0.96491 1.22137 0.99600 0.99976 0.95351 1.21421 0.91717 0.95118 0.86948 0.92127 1.21952 0.94102 0.97662 0.83601 0.87814 1.23111 0.97346 0.98782 0.99800 1.21365 0.88436 0.96994 0.87686 1.44964 1.09917 1.67274 1.10192 1.19027 0.97947 1.29972 0.88582 0.90427 1.24783 0.96019 1.01053 0.98387 1.69938 1.04894 1.49919 1.32081 0.86130 0.77163 0.78925 0.83593 1.21657 1.21678 1.20692 1.19749 0.75948 0.77793 0.84411 1.93210 1.88235 1.37018 1.96612 1.93201 1.29275 1.96343 1.96660 1.93155 1.88613 1.80898 1.53725 0.90394 0.88729 0.89786 0.90167 0.90460 0.88178 0.88117 0.90757 0.91673 0.91055 0.92023 0.91771 0.92160 0.91936 0.93909 0.92853 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 7.81 37.16 0.29 -0.99 16 2 C -0.13 -1.41 0.32 -155.66 -0.05 -1.46 16 3 C -0.17 -1.32 7.65 37.16 0.28 -1.04 16 4 C 0.52 7.70 6.17 -10.99 -0.07 7.64 16 5 O -0.52 -9.92 14.20 5.55 0.08 -9.84 16 6 N -0.58 -8.17 2.72 -164.79 -0.45 -8.61 16 7 C 0.08 0.83 3.59 -3.64 -0.01 0.81 16 8 C -0.14 -1.52 5.95 -26.63 -0.16 -1.68 16 9 C -0.13 -2.10 5.10 -26.86 -0.14 -2.24 16 10 C 0.16 3.04 3.61 -66.14 -0.24 2.80 16 11 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 12 C 0.13 2.34 3.13 -67.09 -0.21 2.13 16 13 H 0.10 2.16 6.93 -51.93 -0.36 1.80 16 14 C -0.15 -2.77 6.08 -25.16 -0.15 -2.92 16 15 C 0.18 4.22 5.23 -2.26 -0.01 4.21 16 16 N -0.60 -14.55 2.94 -161.05 -0.47 -15.02 16 17 C -0.23 -6.12 10.30 -15.06 -0.16 -6.28 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.17 5.49 -17.43 -0.10 -0.26 16 20 N -0.92 -26.56 10.36 55.49 0.57 -25.98 16 21 Si 0.91 21.83 29.55 -169.99 -5.02 16.81 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.48 5.99 1.96 37.16 0.07 6.06 16 26 F -0.17 -2.46 15.46 2.25 0.03 -2.43 16 27 F -0.17 -2.50 16.28 2.25 0.04 -2.46 16 28 F -0.18 -1.97 16.35 2.25 0.04 -1.93 16 29 H 0.08 0.69 7.42 -51.93 -0.39 0.30 16 30 H 0.09 0.69 5.18 -51.93 -0.27 0.42 16 31 H 0.08 0.47 8.04 -51.93 -0.42 0.05 16 32 H 0.08 0.51 7.53 -51.93 -0.39 0.12 16 33 H 0.08 0.70 8.04 -51.93 -0.42 0.28 16 34 H 0.10 0.62 4.60 -51.92 -0.24 0.38 16 35 H 0.10 0.74 2.56 -51.93 -0.13 0.60 16 36 H 0.07 0.73 7.43 -51.93 -0.39 0.34 16 37 H 0.06 0.72 8.09 -51.92 -0.42 0.30 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 1.11 7.11 -51.93 -0.37 0.74 16 41 H 0.06 0.99 6.78 -51.93 -0.35 0.64 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.04 1.10 7.63 -51.93 -0.40 0.70 16 44 H 0.05 1.42 7.31 -51.93 -0.38 1.04 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -31.60 344.91 -6.78 -38.38 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -6.15 Total: -0.88 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.64 Total: 6.78 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: -0.35 Total: -49.62 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 9 Polarization: -6.93 SS G_CDS: 0.11 Total: -6.82 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.60 -6.78 -38.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049855981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.013 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds