Wall clock time and date at job start Tue Mar 31 2020 17:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 C 1.50689 * 109.47386 * 239.99747 * 2 1 3 5 5 O 1.21290 * 120.00192 * 248.50736 * 4 2 1 6 6 N 1.34782 * 120.00189 * 68.50396 * 4 2 1 7 7 C 1.46797 * 119.57425 * 354.07652 * 6 4 2 8 8 C 1.53466 * 107.59495 * 232.05251 * 7 6 4 9 9 C 1.52729 * 108.44150 * 301.92343 * 8 7 6 10 10 C 1.53018 * 110.80691 * 63.76054 * 9 8 7 11 11 H 1.08999 * 111.38307 * 69.72978 * 10 9 8 12 12 C 1.45114 * 119.57976 * 173.80081 * 6 4 2 13 13 H 1.09006 * 109.97075 * 11.93319 * 12 6 4 14 14 C 1.54416 * 111.60832 * 248.64832 * 12 6 4 15 15 C 1.54574 * 102.44942 * 203.41875 * 14 12 6 16 16 N 1.48215 * 107.11576 * 191.93249 * 10 9 8 17 17 C 1.36933 * 125.76646 * 270.86074 * 16 10 9 18 18 H 1.07998 * 120.00468 * 0.02562 * 17 16 10 19 19 C 1.38813 * 119.99722 * 180.02562 * 17 16 10 20 20 N 1.31618 * 120.00210 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99893 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47410 * 89.99980 * 21 19 17 23 23 H 1.48501 * 109.47133 * 210.00006 * 21 19 17 24 24 H 1.48505 * 109.47429 * 329.99880 * 21 19 17 25 25 C 1.53003 * 109.47124 * 119.99203 * 2 1 3 26 26 F 1.39903 * 109.46732 * 60.00742 * 25 2 1 27 27 F 1.39897 * 109.46896 * 180.02562 * 25 2 1 28 28 F 1.39897 * 109.47489 * 300.00601 * 25 2 1 29 29 H 1.09000 * 109.47112 * 195.78615 * 1 2 3 30 30 H 1.08998 * 109.47032 * 75.78375 * 1 2 3 31 31 H 1.09003 * 109.47432 * 315.77528 * 1 2 3 32 32 H 1.08996 * 109.47149 * 70.18971 * 3 2 1 33 33 H 1.08995 * 109.47298 * 190.19369 * 3 2 1 34 34 H 1.09008 * 109.46984 * 310.19131 * 3 2 1 35 35 H 1.09001 * 109.83403 * 351.57443 * 7 6 4 36 36 H 1.08997 * 109.83715 * 112.52943 * 7 6 4 37 37 H 1.09007 * 109.63744 * 61.60169 * 8 7 6 38 38 H 1.08995 * 109.64348 * 182.23216 * 8 7 6 39 39 H 1.09001 * 109.21540 * 184.10685 * 9 8 7 40 40 H 1.09003 * 109.21137 * 303.46560 * 9 8 7 41 41 H 1.08997 * 110.81510 * 321.65565 * 14 12 6 42 42 H 1.09002 * 110.81535 * 85.17927 * 14 12 6 43 43 H 1.08998 * 109.88824 * 141.08594 * 15 14 12 44 44 H 1.08999 * 109.88279 * 262.10429 * 15 14 12 45 45 H 0.96994 * 120.00101 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2303 5 8 2.5974 -1.7785 -1.1257 6 7 1.8538 -0.1589 -2.4471 7 6 1.0562 1.0666 -2.5772 8 6 -0.0071 0.8159 -3.6550 9 6 0.7016 0.4394 -4.9545 10 6 1.4673 -0.8757 -4.7946 11 1 0.7875 -1.7224 -4.6996 12 6 2.4574 -0.7808 -3.6110 13 1 2.8274 -1.7732 -3.3531 14 6 3.5903 0.0893 -4.1974 15 6 3.6553 -0.3928 -5.6646 16 7 2.3472 -1.0149 -5.9792 17 6 2.0067 -1.6125 -7.1633 18 1 1.0205 -2.0337 -7.2917 19 6 2.9291 -1.6771 -8.1986 20 7 4.1308 -1.1634 -8.0423 21 14 2.4645 -2.4917 -9.8140 22 1 1.8805 -1.4786 -10.7294 23 1 3.6763 -3.0819 -10.4373 24 1 1.4672 -3.5624 -9.5598 25 6 2.0400 -0.7211 1.2494 26 9 1.5738 -2.0401 1.2494 27 9 3.4390 -0.7206 1.2496 28 9 1.5736 -0.0616 2.3916 29 1 -0.3633 -0.9889 0.2796 30 1 -0.3633 0.2524 -0.9962 31 1 -0.3634 0.7364 0.7168 32 1 1.8327 1.9012 0.9668 33 1 3.1146 1.4480 -0.1819 34 1 1.5358 2.0062 -0.7851 35 1 0.5731 1.2960 -1.6274 36 1 1.6978 1.8954 -2.8763 37 1 -0.6591 -0.0002 -3.3435 38 1 -0.5951 1.7210 -3.8072 39 1 -0.0380 0.3297 -5.7476 40 1 1.4013 1.2306 -5.2237 41 1 3.3313 1.1469 -4.1484 42 1 4.5323 -0.1040 -3.6842 43 1 3.8320 0.4554 -6.3261 44 1 4.4546 -1.1249 -5.7792 45 1 4.7755 -1.2089 -8.7656 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049855981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:55 Heat of formation + Delta-G solvation = -159.806564 kcal Electronic energy + Delta-G solvation = -31816.985188 eV Core-core repulsion = 27227.170892 eV Total energy + Delta-G solvation = -4589.814296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.16452 -48.63292 -48.61031 -42.13262 -39.71748 -37.36610 -36.12895 -33.98437 -33.75028 -30.85702 -29.84522 -28.51539 -27.37136 -26.72354 -25.95937 -23.76901 -23.29955 -21.96364 -21.48591 -19.86484 -19.40579 -19.33213 -18.79908 -18.38670 -17.87919 -16.78943 -16.65823 -16.43582 -16.04194 -15.71089 -15.59313 -15.42085 -15.16693 -15.03875 -14.98924 -14.80471 -14.71571 -14.58286 -14.23526 -14.13376 -13.89252 -13.56395 -13.43513 -13.41660 -13.13349 -13.03496 -12.78820 -12.62978 -12.49318 -12.44746 -12.30618 -12.12673 -12.03130 -11.82292 -11.55501 -11.43373 -11.18499 -10.79127 -10.71106 -9.69269 -8.89652 -7.84700 -5.19816 1.30976 1.43375 1.46554 1.47518 1.55409 1.86515 2.49036 2.58547 2.89024 2.96295 3.33515 3.41702 3.53641 3.64751 3.74533 3.86170 3.89039 4.02052 4.04089 4.12091 4.36012 4.46587 4.50378 4.55846 4.58823 4.64511 4.66993 4.72830 4.77307 4.84253 4.94852 5.05266 5.13600 5.15805 5.20709 5.36764 5.40569 5.52622 5.58296 5.65155 5.73707 6.16543 6.26109 6.92166 7.07404 7.74056 8.40284 9.25740 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.024476 B = 0.003337 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.698097 B = 8389.965421 C = 8695.164424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.121 4.121 3 C -0.166 4.166 4 C 0.517 3.483 5 O -0.574 6.574 6 N -0.576 5.576 7 C 0.074 3.926 8 C -0.125 4.125 9 C -0.120 4.120 10 C 0.151 3.849 11 H 0.047 0.953 12 C 0.146 3.854 13 H 0.066 0.934 14 C -0.132 4.132 15 C 0.190 3.810 16 N -0.620 5.620 17 C -0.235 4.235 18 H 0.081 0.919 19 C -0.064 4.064 20 N -0.951 5.951 21 Si 0.975 3.025 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.271 1.271 25 C 0.468 3.532 26 F -0.186 7.186 27 F -0.189 7.189 28 F -0.169 7.169 29 H 0.066 0.934 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.126 0.874 35 H 0.142 0.858 36 H 0.092 0.908 37 H 0.070 0.930 38 H 0.111 0.889 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.065 0.935 43 H 0.015 0.985 44 H 0.009 0.991 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 11.391 19.690 25.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.125 4.125 3 C -0.222 4.222 4 C 0.305 3.695 5 O -0.454 6.454 6 N -0.306 5.306 7 C -0.046 4.046 8 C -0.164 4.164 9 C -0.160 4.160 10 C 0.044 3.956 11 H 0.065 0.935 12 C 0.041 3.959 13 H 0.084 0.916 14 C -0.171 4.171 15 C 0.065 3.935 16 N -0.345 5.345 17 C -0.364 4.364 18 H 0.099 0.901 19 C -0.257 4.257 20 N -0.600 5.600 21 Si 0.804 3.196 22 H -0.210 1.210 23 H -0.224 1.224 24 H -0.196 1.196 25 C 0.413 3.587 26 F -0.168 7.168 27 F -0.171 7.171 28 F -0.150 7.150 29 H 0.085 0.915 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.123 0.877 33 H 0.083 0.917 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.129 0.871 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.084 0.916 43 H 0.033 0.967 44 H 0.027 0.973 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.245 10.759 19.540 24.546 hybrid contribution 0.756 -1.297 -1.236 1.945 sum -9.489 9.462 18.303 22.684 Atomic orbital electron populations 1.22341 0.86569 1.05598 1.07236 1.22108 1.02603 0.99623 0.88192 1.22541 1.02979 0.89057 1.07656 1.20454 0.79035 0.84831 0.85213 1.90785 1.44655 1.23300 1.86611 1.47393 1.50960 1.27540 1.04742 1.23043 0.93464 0.85549 1.02555 1.21958 0.97410 1.03548 0.93458 1.21915 0.98887 0.97082 0.98121 1.21639 0.91502 0.96732 0.85702 0.93452 1.21375 0.93574 0.96314 0.84660 0.91565 1.22911 0.97933 1.00262 0.95979 1.21045 0.87223 0.94683 0.90548 1.45214 1.11127 1.67244 1.10938 1.19387 0.97979 1.29320 0.89700 0.90122 1.25581 0.96132 1.02341 1.01677 1.70157 1.05787 1.51534 1.32569 0.85125 0.76605 0.78164 0.79718 1.21026 1.22411 1.19647 1.20130 0.75331 0.77476 0.85747 1.93177 1.88326 1.38497 1.96765 1.93170 1.30701 1.96378 1.96808 1.93176 1.88313 1.80406 1.53130 0.91520 0.87389 0.86225 0.87705 0.91716 0.85603 0.84105 0.88993 0.91132 0.87111 0.93363 0.92740 0.89206 0.91606 0.96671 0.97284 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 7.81 71.98 0.56 -1.27 16 2 C -0.12 -2.22 0.32 -52.93 -0.02 -2.23 16 3 C -0.17 -1.86 7.65 71.98 0.55 -1.31 16 4 C 0.52 14.53 6.17 87.65 0.54 15.07 16 5 O -0.57 -22.31 14.20 -3.06 -0.04 -22.36 16 6 N -0.58 -15.03 2.72 -793.65 -2.16 -17.18 16 7 C 0.07 1.15 3.59 86.48 0.31 1.46 16 8 C -0.13 -2.24 5.95 30.66 0.18 -2.06 16 9 C -0.12 -3.66 5.10 30.51 0.16 -3.51 16 10 C 0.15 5.93 3.61 45.21 0.16 6.10 16 11 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 12 C 0.15 5.29 3.13 46.28 0.14 5.43 16 13 H 0.07 2.91 6.93 -2.38 -0.02 2.89 16 14 C -0.13 -4.86 6.08 31.61 0.19 -4.66 16 15 C 0.19 9.38 5.23 86.58 0.45 9.83 16 16 N -0.62 -31.26 2.94 -663.46 -1.95 -33.21 16 17 C -0.23 -13.07 10.30 84.03 0.87 -12.20 16 18 H 0.08 4.31 7.83 -2.91 -0.02 4.29 16 19 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 20 N -0.95 -57.45 10.36 21.65 0.22 -57.23 16 21 Si 0.98 46.02 29.55 68.60 2.03 48.05 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 C 0.47 10.98 1.96 71.98 0.14 11.12 16 26 F -0.19 -5.34 15.46 44.97 0.70 -4.64 16 27 F -0.19 -5.34 16.28 44.97 0.73 -4.61 16 28 F -0.17 -3.16 16.35 44.97 0.74 -2.42 16 29 H 0.07 0.97 7.42 -2.39 -0.02 0.95 16 30 H 0.11 0.95 5.18 -2.39 -0.01 0.94 16 31 H 0.12 0.58 8.04 -2.39 -0.02 0.57 16 32 H 0.10 0.74 7.53 -2.39 -0.02 0.72 16 33 H 0.06 0.95 8.04 -2.39 -0.02 0.93 16 34 H 0.13 0.73 4.60 -2.38 -0.01 0.72 16 35 H 0.14 1.14 2.56 -2.39 -0.01 1.13 16 36 H 0.09 1.24 7.43 -2.39 -0.02 1.23 16 37 H 0.07 1.25 8.09 -2.38 -0.02 1.23 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.05 1.78 7.11 -2.39 -0.02 1.76 16 41 H 0.09 2.79 6.78 -2.39 -0.02 2.77 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.02 0.81 7.63 -2.39 -0.02 0.80 16 44 H 0.01 0.51 7.31 -2.39 -0.02 0.49 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -76.12 344.91 6.00 -70.13 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: 1.02 Total: 4.91 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: 4.71 Total: 18.57 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -3.88 Total: -107.62 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 9 Polarization: -13.84 SS G_CDS: 2.16 Total: -11.67 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.12 6.00 -70.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049855981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.681 kcal (2) G-P(sol) polarization free energy of solvation -76.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds