Wall clock time and date at job start Tue Mar 31 2020 17:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46790 * 2 1 4 4 H 1.09004 * 109.99558 * 311.50437 * 3 2 1 5 5 C 1.54334 * 109.98811 * 190.47005 * 3 2 1 6 6 H 1.08990 * 110.51620 * 336.97710 * 5 3 2 7 7 N 1.46506 * 110.84605 * 100.19608 * 5 3 2 8 8 C 1.34782 * 119.99755 * 200.14303 * 7 5 3 9 9 O 1.21695 * 119.99664 * 0.02562 * 8 7 5 10 10 C 1.46656 * 119.99952 * 180.02562 * 8 7 5 11 11 O 1.35396 * 126.11661 * 0.02671 * 10 8 7 12 12 C 1.34395 * 109.47424 * 179.90025 * 11 10 8 13 13 C 1.33898 * 108.55947 * 359.97438 * 12 11 10 14 14 C 1.35183 * 126.11617 * 179.71410 * 10 8 7 15 15 C 1.50725 * 130.57658 * 0.94068 * 14 10 8 16 16 C 1.53678 * 107.49221 * 163.75877 * 15 14 10 17 17 O 1.42901 * 109.97217 * 48.05261 * 16 15 14 18 18 C 1.43517 * 114.76205 * 287.61105 * 17 16 15 19 19 C 1.55153 * 103.01853 * 218.66133 * 5 3 2 20 20 C 1.54913 * 101.58371 * 35.30948 * 19 5 3 21 21 N 1.47023 * 109.88140 * 72.60261 * 3 2 1 22 22 C 1.36933 * 125.65060 * 298.38933 * 21 3 2 23 23 H 1.07999 * 119.99450 * 46.92747 * 22 21 3 24 24 C 1.38808 * 120.00266 * 226.92697 * 22 21 3 25 25 N 1.31615 * 119.99860 * 192.98878 * 24 22 21 26 26 Si 1.86801 * 119.99950 * 12.98663 * 24 22 21 27 27 H 1.48498 * 109.47048 * 267.29772 * 26 24 22 28 28 H 1.48498 * 109.47148 * 27.29592 * 26 24 22 29 29 H 1.48503 * 109.46870 * 147.29832 * 26 24 22 30 30 H 1.09004 * 109.46464 * 158.57866 * 1 2 3 31 31 H 1.08997 * 109.47332 * 278.57757 * 1 2 3 32 32 H 1.09002 * 109.47252 * 38.58508 * 1 2 3 33 33 H 1.08995 * 109.47450 * 239.99999 * 2 1 3 34 34 H 1.09006 * 109.46711 * 119.99224 * 2 1 3 35 35 H 0.97002 * 120.00382 * 20.15012 * 7 5 3 36 36 H 1.08001 * 125.71892 * 179.97438 * 12 11 10 37 37 H 1.09003 * 109.99668 * 44.17151 * 15 14 10 38 38 H 1.08992 * 109.73527 * 283.20440 * 15 14 10 39 39 H 1.08996 * 109.39001 * 287.89681 * 16 15 14 40 40 H 1.08999 * 109.38561 * 168.20099 * 16 15 14 41 41 H 1.09000 * 109.82528 * 291.96257 * 18 17 16 42 42 H 1.09005 * 109.87584 * 171.06598 * 18 17 16 43 43 H 1.08996 * 111.00845 * 277.23300 * 19 5 3 44 44 H 1.09003 * 110.99996 * 153.38430 * 19 5 3 45 45 H 1.08990 * 110.36642 * 204.15055 * 20 19 5 46 46 H 1.09002 * 110.45698 * 81.87214 * 20 19 5 47 47 H 0.97002 * 120.00217 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5242 2.0202 -0.7671 5 6 3.5605 1.4646 -0.2636 6 1 4.0087 0.5083 0.0054 7 7 3.8424 1.7956 -1.6626 8 6 5.0363 1.4798 -2.2025 9 8 5.8799 0.9193 -1.5278 10 6 5.3187 1.8116 -3.6028 11 8 4.4754 2.4314 -4.4618 12 6 5.0750 2.5700 -5.6566 13 6 6.3042 2.0445 -5.5801 14 6 6.4697 1.5586 -4.2651 15 6 7.7360 0.8815 -3.8070 16 6 8.5396 0.5068 -5.0622 17 8 8.6139 1.6268 -5.9466 18 6 7.3877 1.9409 -6.6230 19 6 4.0623 2.5905 0.6787 20 6 3.1226 2.4175 1.8981 21 7 1.8169 2.0518 1.3194 22 6 0.5985 2.2426 1.9146 23 1 -0.1239 1.4401 1.9352 24 6 0.2921 3.4674 2.4914 25 7 -0.7564 3.5800 3.2790 26 14 1.3679 4.9559 2.1499 27 1 2.4093 5.0659 3.2027 28 1 2.0186 4.8026 0.8240 29 1 0.5307 6.1825 2.1516 30 1 -0.3632 -0.9567 -0.3754 31 1 -0.3634 0.1533 1.0161 32 1 -0.3634 0.8033 -0.6409 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.1698 2.2421 -2.2005 36 1 4.6386 3.0285 -6.5317 37 1 7.4939 -0.0176 -3.2402 38 1 8.3153 1.5653 -3.1867 39 1 8.0501 -0.3239 -5.5706 40 1 9.5467 0.2081 -4.7712 41 1 7.1438 1.1501 -7.3324 42 1 7.4871 2.8908 -7.1483 43 1 3.9313 3.5708 0.2205 44 1 5.1026 2.4289 0.9611 45 1 3.0435 3.3529 2.4518 46 1 3.4853 1.6218 2.5487 47 1 -0.9704 4.4358 3.6824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087673649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:02 Heat of formation + Delta-G solvation = -40.045367 kcal Electronic energy + Delta-G solvation = -29532.746090 eV Core-core repulsion = 25489.981769 eV Total energy + Delta-G solvation = -4042.764320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.09474 -39.75015 -38.86763 -37.95255 -34.43424 -33.71992 -32.60868 -32.42729 -32.10903 -29.99925 -28.98257 -27.14071 -26.56952 -24.76886 -23.80590 -22.96410 -22.01587 -20.71599 -20.36212 -19.94054 -19.48424 -18.11994 -16.96826 -16.83211 -16.59113 -16.48225 -16.21769 -15.54648 -15.31204 -15.04636 -14.52249 -14.40472 -14.14624 -14.01445 -13.73286 -13.40693 -12.97506 -12.87436 -12.64986 -12.52366 -12.45870 -12.25150 -11.93657 -11.88666 -11.50320 -11.25717 -11.21051 -10.95982 -10.83833 -10.53925 -10.41786 -10.24612 -10.06471 -10.02020 -9.91544 -9.74033 -9.43923 -9.06604 -8.74997 -8.54812 -6.65156 -6.01791 -3.60982 0.86424 1.92886 2.45428 3.07776 3.16283 3.29777 3.42158 3.43272 3.48196 4.12425 4.32633 4.48288 4.55783 4.63626 4.85823 4.91757 4.92966 4.99397 5.10850 5.14080 5.19232 5.33831 5.39628 5.49196 5.53575 5.57429 5.68014 5.76657 5.80472 5.86780 5.90552 6.02820 6.05032 6.14616 6.30529 6.35662 6.48940 6.51936 6.55565 6.61613 6.72755 6.76034 6.82851 7.01435 7.06451 7.49229 7.99901 8.07047 8.38762 8.83802 9.61122 10.23977 11.10630 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.002851 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.539156 B = 9818.397976 C =10019.401182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.154 3.846 4 H 0.045 0.955 5 C 0.134 3.866 6 H 0.099 0.901 7 N -0.703 5.703 8 C 0.601 3.399 9 O -0.519 6.519 10 C -0.060 4.060 11 O -0.166 6.166 12 C 0.014 3.986 13 C -0.240 4.240 14 C -0.087 4.087 15 C -0.086 4.086 16 C 0.063 3.937 17 O -0.379 6.379 18 C 0.136 3.864 19 C -0.147 4.147 20 C 0.119 3.881 21 N -0.598 5.598 22 C -0.253 4.253 23 H 0.091 0.909 24 C 0.042 3.958 25 N -0.903 5.903 26 Si 0.887 3.113 27 H -0.285 1.285 28 H -0.267 1.267 29 H -0.302 1.302 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.405 0.595 36 H 0.212 0.788 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.034 0.966 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.491 -4.507 -20.181 25.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.047 3.953 4 H 0.063 0.937 5 C 0.030 3.970 6 H 0.117 0.883 7 N -0.352 5.352 8 C 0.387 3.613 9 O -0.397 6.397 10 C -0.112 4.112 11 O -0.062 6.062 12 C -0.056 4.056 13 C -0.242 4.242 14 C -0.090 4.090 15 C -0.123 4.123 16 C -0.014 4.014 17 O -0.298 6.298 18 C 0.060 3.940 19 C -0.186 4.186 20 C -0.005 4.005 21 N -0.325 5.325 22 C -0.381 4.381 23 H 0.108 0.892 24 C -0.160 4.160 25 N -0.543 5.543 26 Si 0.718 3.282 27 H -0.213 1.213 28 H -0.192 1.192 29 H -0.230 1.230 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.240 0.760 36 H 0.228 0.772 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.751 -4.595 -19.450 24.839 hybrid contribution -0.089 1.188 -0.426 1.265 sum 14.662 -3.407 -19.876 24.932 Atomic orbital electron populations 1.21848 0.95449 0.99229 1.03571 1.21910 0.96908 0.97307 1.00203 1.21315 0.89997 0.93545 0.90410 0.93691 1.22179 0.97347 0.98959 0.78528 0.88335 1.45982 1.15627 1.59906 1.13694 1.16496 0.82862 0.79201 0.82767 1.90859 1.46283 1.42776 1.59799 1.21538 0.90962 1.06510 0.92149 1.84341 1.40823 1.61366 1.19649 1.23615 0.92579 1.01654 0.87719 1.21012 0.97986 1.07541 0.97666 1.20178 0.95724 1.00161 0.92979 1.20880 0.91765 1.01480 0.98216 1.22710 1.01212 0.87976 0.89521 1.87984 1.31894 1.50341 1.59558 1.21025 0.80884 1.01457 0.90662 1.23207 0.99463 0.98509 0.97409 1.21896 0.86483 0.98453 0.93712 1.44494 1.01608 1.72808 1.13565 1.18710 0.90906 0.96420 1.32037 0.89210 1.25730 0.95443 0.97558 0.97278 1.69775 1.27958 1.25415 1.31195 0.86695 0.79653 0.82684 0.79212 1.21273 1.19205 1.22955 0.94917 0.90662 0.93151 0.93711 0.92056 0.75989 0.77188 0.88338 0.89122 0.92774 0.88034 0.91520 0.87628 0.91333 0.91015 0.93608 0.94794 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.12 37.16 0.34 -2.25 16 2 C -0.12 -2.17 5.40 -26.73 -0.14 -2.31 16 3 C 0.15 2.92 2.93 -66.94 -0.20 2.72 16 4 H 0.05 0.88 7.44 -51.93 -0.39 0.49 16 5 C 0.13 2.27 2.75 -66.09 -0.18 2.09 16 6 H 0.10 1.69 7.40 -51.93 -0.38 1.31 16 7 N -0.70 -10.44 5.20 -53.34 -0.28 -10.71 16 8 C 0.60 9.10 7.78 -12.86 -0.10 9.00 16 9 O -0.52 -8.93 15.37 5.19 0.08 -8.85 16 10 C -0.06 -0.80 7.11 -37.27 -0.27 -1.07 16 11 O -0.17 -1.91 10.44 2.34 0.02 -1.89 16 12 C 0.01 0.12 12.06 29.21 0.35 0.47 16 13 C -0.24 -2.34 6.04 -105.01 -0.63 -2.98 16 14 C -0.09 -1.06 6.02 -104.59 -0.63 -1.69 16 15 C -0.09 -0.93 5.70 -27.52 -0.16 -1.09 16 16 C 0.06 0.54 6.75 37.51 0.25 0.79 16 17 O -0.38 -3.76 10.70 -35.23 -0.38 -4.13 16 18 C 0.14 1.04 7.27 36.03 0.26 1.30 16 19 C -0.15 -2.66 6.77 -24.58 -0.17 -2.83 16 20 C 0.12 2.52 6.25 -2.53 -0.02 2.51 16 21 N -0.60 -13.68 2.47 -162.56 -0.40 -14.08 16 22 C -0.25 -6.76 9.56 -15.06 -0.14 -6.90 16 23 H 0.09 2.53 5.24 -52.49 -0.27 2.26 16 24 C 0.04 1.17 5.48 -17.43 -0.10 1.07 16 25 N -0.90 -26.94 13.97 55.49 0.78 -26.17 16 26 Si 0.89 22.11 25.12 -169.99 -4.27 17.84 16 27 H -0.29 -7.03 6.83 56.52 0.39 -6.65 16 28 H -0.27 -6.47 6.93 56.52 0.39 -6.08 16 29 H -0.30 -7.65 7.11 56.52 0.40 -7.24 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 1.56 5.54 -51.93 -0.29 1.27 16 32 H 0.05 0.92 7.79 -51.93 -0.40 0.51 16 33 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.40 5.44 8.08 -40.82 -0.33 5.11 16 36 H 0.21 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.10 1.09 7.64 -51.93 -0.40 0.70 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.29 7.97 -51.93 -0.41 0.87 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.05 1.05 4.20 -51.93 -0.22 0.83 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 370.14 15.07 5.58 5.58 Total: -1.00 -32.20 370.14 -7.29 -39.50 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -6.90 Total: 4.07 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.52 Total: -1.15 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.10 Total: -50.96 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: -0.27 Total: -14.88 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.27 Total: 17.84 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.20 -7.29 -39.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087673649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.549 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds