Wall clock time and date at job start Tue Mar 31 2020 17:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46790 * 2 1 4 4 H 1.09004 * 109.99558 * 311.50437 * 3 2 1 5 5 C 1.54334 * 109.98811 * 190.47005 * 3 2 1 6 6 H 1.08990 * 110.51620 * 336.97710 * 5 3 2 7 7 N 1.46506 * 110.84605 * 100.19608 * 5 3 2 8 8 C 1.34782 * 119.99755 * 200.14303 * 7 5 3 9 9 O 1.21695 * 119.99664 * 0.02562 * 8 7 5 10 10 C 1.46656 * 119.99952 * 180.02562 * 8 7 5 11 11 O 1.35396 * 126.11661 * 0.02671 * 10 8 7 12 12 C 1.34395 * 109.47424 * 179.90025 * 11 10 8 13 13 C 1.33898 * 108.55947 * 359.97438 * 12 11 10 14 14 C 1.35183 * 126.11617 * 179.71410 * 10 8 7 15 15 C 1.50725 * 130.57658 * 0.94068 * 14 10 8 16 16 C 1.53678 * 107.49221 * 163.75877 * 15 14 10 17 17 O 1.42901 * 109.97217 * 48.05261 * 16 15 14 18 18 C 1.43517 * 114.76205 * 287.61105 * 17 16 15 19 19 C 1.55153 * 103.01853 * 218.66133 * 5 3 2 20 20 C 1.54913 * 101.58371 * 35.30948 * 19 5 3 21 21 N 1.47023 * 109.88140 * 72.60261 * 3 2 1 22 22 C 1.36933 * 125.65060 * 298.38933 * 21 3 2 23 23 H 1.07999 * 119.99450 * 46.92747 * 22 21 3 24 24 C 1.38808 * 120.00266 * 226.92697 * 22 21 3 25 25 N 1.31615 * 119.99860 * 192.98878 * 24 22 21 26 26 Si 1.86801 * 119.99950 * 12.98663 * 24 22 21 27 27 H 1.48498 * 109.47048 * 267.29772 * 26 24 22 28 28 H 1.48498 * 109.47148 * 27.29592 * 26 24 22 29 29 H 1.48503 * 109.46870 * 147.29832 * 26 24 22 30 30 H 1.09004 * 109.46464 * 158.57866 * 1 2 3 31 31 H 1.08997 * 109.47332 * 278.57757 * 1 2 3 32 32 H 1.09002 * 109.47252 * 38.58508 * 1 2 3 33 33 H 1.08995 * 109.47450 * 239.99999 * 2 1 3 34 34 H 1.09006 * 109.46711 * 119.99224 * 2 1 3 35 35 H 0.97002 * 120.00382 * 20.15012 * 7 5 3 36 36 H 1.08001 * 125.71892 * 179.97438 * 12 11 10 37 37 H 1.09003 * 109.99668 * 44.17151 * 15 14 10 38 38 H 1.08992 * 109.73527 * 283.20440 * 15 14 10 39 39 H 1.08996 * 109.39001 * 287.89681 * 16 15 14 40 40 H 1.08999 * 109.38561 * 168.20099 * 16 15 14 41 41 H 1.09000 * 109.82528 * 291.96257 * 18 17 16 42 42 H 1.09005 * 109.87584 * 171.06598 * 18 17 16 43 43 H 1.08996 * 111.00845 * 277.23300 * 19 5 3 44 44 H 1.09003 * 110.99996 * 153.38430 * 19 5 3 45 45 H 1.08990 * 110.36642 * 204.15055 * 20 19 5 46 46 H 1.09002 * 110.45698 * 81.87214 * 20 19 5 47 47 H 0.97002 * 120.00217 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5242 2.0202 -0.7671 5 6 3.5605 1.4646 -0.2636 6 1 4.0087 0.5083 0.0054 7 7 3.8424 1.7956 -1.6626 8 6 5.0363 1.4798 -2.2025 9 8 5.8799 0.9193 -1.5278 10 6 5.3187 1.8116 -3.6028 11 8 4.4754 2.4314 -4.4618 12 6 5.0750 2.5700 -5.6566 13 6 6.3042 2.0445 -5.5801 14 6 6.4697 1.5586 -4.2651 15 6 7.7360 0.8815 -3.8070 16 6 8.5396 0.5068 -5.0622 17 8 8.6139 1.6268 -5.9466 18 6 7.3877 1.9409 -6.6230 19 6 4.0623 2.5905 0.6787 20 6 3.1226 2.4175 1.8981 21 7 1.8169 2.0518 1.3194 22 6 0.5985 2.2426 1.9146 23 1 -0.1239 1.4401 1.9352 24 6 0.2921 3.4674 2.4914 25 7 -0.7564 3.5800 3.2790 26 14 1.3679 4.9559 2.1499 27 1 2.4093 5.0659 3.2027 28 1 2.0186 4.8026 0.8240 29 1 0.5307 6.1825 2.1516 30 1 -0.3632 -0.9567 -0.3754 31 1 -0.3634 0.1533 1.0161 32 1 -0.3634 0.8033 -0.6409 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.1698 2.2421 -2.2005 36 1 4.6386 3.0285 -6.5317 37 1 7.4939 -0.0176 -3.2402 38 1 8.3153 1.5653 -3.1867 39 1 8.0501 -0.3239 -5.5706 40 1 9.5467 0.2081 -4.7712 41 1 7.1438 1.1501 -7.3324 42 1 7.4871 2.8908 -7.1483 43 1 3.9313 3.5708 0.2205 44 1 5.1026 2.4289 0.9611 45 1 3.0435 3.3529 2.4518 46 1 3.4853 1.6218 2.5487 47 1 -0.9704 4.4358 3.6824 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087673649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:01 Heat of formation + Delta-G solvation = -62.253098 kcal Electronic energy + Delta-G solvation = -29533.709089 eV Core-core repulsion = 25489.981769 eV Total energy + Delta-G solvation = -4043.727320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.89407 -41.04446 -39.54667 -39.42211 -35.78153 -34.64380 -34.26182 -33.95327 -33.06151 -31.42630 -30.19224 -28.62145 -27.20541 -26.36237 -24.81428 -24.00843 -23.60671 -22.05536 -21.68711 -20.82413 -20.73631 -19.11518 -18.89235 -18.06354 -17.61434 -17.35728 -17.03842 -16.67512 -16.22710 -16.07773 -15.91759 -15.72667 -15.65365 -15.31774 -14.57618 -14.46330 -14.39865 -14.24592 -14.15154 -13.82059 -13.67541 -13.55947 -13.24044 -13.18773 -13.03479 -12.71943 -12.58546 -12.37326 -12.23740 -11.94363 -11.87337 -11.78115 -11.58167 -11.40573 -11.27493 -10.81256 -10.66897 -10.52520 -10.23301 -9.65077 -8.57354 -8.15385 -5.73148 -0.04266 1.19619 1.29826 1.37433 1.49233 1.57409 1.99524 2.09195 2.41367 2.82854 3.06895 3.30285 3.39562 3.58790 3.64687 3.77098 3.79492 3.93622 4.07039 4.19928 4.26193 4.29407 4.35086 4.38724 4.43517 4.51413 4.57184 4.67266 4.71675 4.78941 4.81652 4.82773 4.86976 4.95310 4.96918 5.04445 5.07352 5.14589 5.19400 5.25356 5.31573 5.51135 5.54058 5.73681 5.96525 6.14414 6.34663 6.37640 6.84879 6.93232 7.51823 8.22953 8.99283 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019988 B = 0.002851 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.539156 B = 9818.397976 C =10019.401182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.118 4.118 3 C 0.153 3.847 4 H 0.045 0.955 5 C 0.150 3.850 6 H 0.100 0.900 7 N -0.698 5.698 8 C 0.604 3.396 9 O -0.547 6.547 10 C -0.093 4.093 11 O -0.175 6.175 12 C 0.035 3.965 13 C -0.255 4.255 14 C -0.094 4.094 15 C -0.089 4.089 16 C 0.066 3.934 17 O -0.398 6.398 18 C 0.134 3.866 19 C -0.137 4.137 20 C 0.113 3.887 21 N -0.613 5.613 22 C -0.236 4.236 23 H 0.068 0.932 24 C -0.014 4.014 25 N -0.950 5.950 26 Si 0.942 3.058 27 H -0.283 1.283 28 H -0.255 1.255 29 H -0.309 1.309 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.413 0.587 36 H 0.259 0.741 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.128 0.872 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.029 0.971 46 H 0.040 0.960 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.294 -4.567 -23.630 29.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.063 0.937 5 C 0.045 3.955 6 H 0.118 0.882 7 N -0.348 5.348 8 C 0.391 3.609 9 O -0.427 6.427 10 C -0.144 4.144 11 O -0.071 6.071 12 C -0.033 4.033 13 C -0.256 4.256 14 C -0.097 4.097 15 C -0.126 4.126 16 C -0.010 4.010 17 O -0.316 6.316 18 C 0.058 3.942 19 C -0.176 4.176 20 C -0.011 4.011 21 N -0.340 5.340 22 C -0.365 4.365 23 H 0.085 0.915 24 C -0.210 4.210 25 N -0.594 5.594 26 Si 0.772 3.228 27 H -0.210 1.210 28 H -0.179 1.179 29 H -0.237 1.237 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.249 0.751 36 H 0.275 0.725 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.146 0.854 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.577 -4.667 -22.939 28.684 hybrid contribution -0.625 1.112 0.542 1.386 sum 15.953 -3.555 -22.396 27.726 Atomic orbital electron populations 1.21755 0.95911 1.00509 1.01357 1.21838 0.96363 0.96379 1.01107 1.21406 0.91686 0.93943 0.88256 0.93737 1.21859 0.95416 0.98583 0.79648 0.88193 1.45816 1.16065 1.60167 1.12760 1.16675 0.82241 0.78419 0.83539 1.90836 1.46972 1.44002 1.60857 1.21138 0.92077 1.09369 0.91830 1.84330 1.40940 1.61362 1.20493 1.24594 0.92001 0.99236 0.87497 1.21342 0.99225 1.07931 0.97147 1.20565 0.95532 0.99362 0.94233 1.20913 0.91732 1.00759 0.99223 1.22754 1.01863 0.87960 0.88461 1.87960 1.33183 1.50749 1.59747 1.21321 0.79383 1.03376 0.90161 1.23121 0.99543 0.98775 0.96190 1.21965 0.86334 0.97759 0.95048 1.44580 1.01063 1.72987 1.15378 1.18679 0.91668 0.95539 1.30623 0.91480 1.26303 0.96814 1.00110 0.97823 1.69894 1.30345 1.25839 1.33334 0.85801 0.78051 0.79434 0.79553 1.20967 1.17927 1.23728 0.92195 0.94074 0.93736 0.90846 0.92958 0.75081 0.72513 0.89182 0.90269 0.91659 0.86463 0.89490 0.85446 0.91684 0.89447 0.95259 0.94208 0.92790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.12 71.98 0.66 -4.24 16 2 C -0.12 -3.96 5.40 30.60 0.17 -3.80 16 3 C 0.15 5.63 2.93 45.35 0.13 5.77 16 4 H 0.04 1.67 7.44 -2.38 -0.02 1.65 16 5 C 0.15 4.84 2.75 46.18 0.13 4.97 16 6 H 0.10 3.26 7.40 -2.39 -0.02 3.24 16 7 N -0.70 -19.58 5.20 -440.87 -2.29 -21.88 16 8 C 0.60 17.59 7.78 86.44 0.67 18.26 16 9 O -0.55 -18.44 15.37 -4.33 -0.07 -18.51 16 10 C -0.09 -2.34 7.11 23.77 0.17 -2.17 16 11 O -0.17 -3.59 10.44 -14.54 -0.15 -3.74 16 12 C 0.04 0.47 12.06 66.83 0.81 1.27 16 13 C -0.25 -4.17 6.04 -20.12 -0.12 -4.29 16 14 C -0.09 -2.13 6.02 -19.84 -0.12 -2.25 16 15 C -0.09 -1.85 5.70 30.08 0.17 -1.67 16 16 C 0.07 1.00 6.75 72.21 0.49 1.49 16 17 O -0.40 -6.84 10.70 -148.98 -1.59 -8.44 16 18 C 0.13 1.56 7.27 71.25 0.52 2.08 16 19 C -0.14 -4.76 6.77 31.99 0.22 -4.55 16 20 C 0.11 4.72 6.25 86.86 0.54 5.26 16 21 N -0.61 -27.93 2.47 -668.23 -1.65 -29.58 16 22 C -0.24 -12.87 9.56 84.03 0.80 -12.06 16 23 H 0.07 3.95 5.24 -2.91 -0.02 3.93 16 24 C -0.01 -0.77 5.48 84.86 0.46 -0.31 16 25 N -0.95 -58.57 13.97 21.65 0.30 -58.27 16 26 Si 0.94 46.28 25.12 68.60 1.72 48.01 16 27 H -0.28 -13.60 6.83 99.48 0.68 -12.92 16 28 H -0.26 -11.84 6.93 99.48 0.69 -11.15 16 29 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.74 5.54 -2.39 -0.01 1.72 16 32 H 0.04 1.60 7.79 -2.39 -0.02 1.58 16 33 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 34 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.41 10.33 8.08 -92.71 -0.75 9.58 16 36 H 0.26 0.60 8.06 -2.91 -0.02 0.57 16 37 H 0.09 1.98 7.64 -2.39 -0.02 1.96 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.13 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.06 2.32 7.97 -2.39 -0.02 2.30 16 44 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 45 H 0.03 1.32 4.20 -2.39 -0.01 1.31 16 46 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -71.59 370.14 2.17 -69.42 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.21 Total: 19.23 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 5.69 Total: 3.76 kcal Atomic # 7 Polarization: -106.08 SS G_CDS: -3.64 Total: -109.72 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -1.81 Total: -30.69 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.72 Total: 48.01 kcal Total: -71.59 2.17 -69.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087673649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.163 kcal (2) G-P(sol) polarization free energy of solvation -71.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds