Wall clock time and date at job start Tue Mar 31 2020 17:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47534 * 2 1 4 4 C 1.50698 * 109.47425 * 120.00425 * 2 1 3 5 5 O 1.21277 * 120.00654 * 113.12965 * 4 2 1 6 6 N 1.34781 * 119.99643 * 293.13476 * 4 2 1 7 7 C 1.47385 * 125.74009 * 175.12153 * 6 4 2 8 8 C 1.55409 * 106.73920 * 179.03218 * 7 6 4 9 9 H 1.08997 * 112.76144 * 146.41332 * 8 7 6 10 10 C 1.52906 * 106.57101 * 270.29045 * 8 7 6 11 11 C 1.51878 * 111.49782 * 169.08653 * 10 8 7 12 12 N 1.44347 * 113.48215 * 321.32869 * 11 10 8 13 13 C 1.36936 * 116.42810 * 187.48119 * 12 11 10 14 14 H 1.07999 * 120.00271 * 145.24969 * 13 12 11 15 15 C 1.38812 * 119.99579 * 325.24392 * 13 12 11 16 16 N 1.31619 * 120.00347 * 346.02504 * 15 13 12 17 17 Si 1.86802 * 119.99743 * 166.02993 * 15 13 12 18 18 H 1.48504 * 109.47329 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47356 * 120.00147 * 17 15 13 20 20 H 1.48503 * 109.46878 * 239.99991 * 17 15 13 21 21 C 1.43979 * 127.14863 * 7.49761 * 12 11 10 22 22 C 1.49786 * 116.29719 * 2.85318 * 21 12 11 23 23 H 1.09001 * 108.74605 * 141.03239 * 22 21 12 24 24 C 1.47936 * 125.74079 * 355.08781 * 6 4 2 25 25 C 1.53004 * 109.46873 * 240.00030 * 2 1 3 26 26 F 1.39898 * 109.47161 * 300.00311 * 25 2 1 27 27 F 1.39906 * 109.47265 * 60.00229 * 25 2 1 28 28 F 1.39902 * 109.47340 * 180.02562 * 25 2 1 29 29 H 1.09006 * 109.46594 * 289.26449 * 1 2 3 30 30 H 1.09003 * 109.46762 * 49.25497 * 1 2 3 31 31 H 1.08995 * 109.47195 * 169.25737 * 1 2 3 32 32 H 1.09001 * 109.47124 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47150 * 300.00338 * 3 2 1 34 34 H 1.09000 * 109.46906 * 60.00317 * 3 2 1 35 35 H 1.08997 * 110.00777 * 298.35818 * 7 6 4 36 36 H 1.09004 * 110.00333 * 59.71743 * 7 6 4 37 37 H 1.08998 * 109.04138 * 290.43547 * 10 8 7 38 38 H 1.08998 * 109.04422 * 49.31667 * 10 8 7 39 39 H 1.08997 * 108.95960 * 199.97545 * 11 10 8 40 40 H 1.09009 * 108.01882 * 82.00750 * 11 10 8 41 41 H 0.96998 * 120.00153 * 179.97438 * 16 15 13 42 42 H 1.09010 * 108.11613 * 241.08122 * 21 12 11 43 43 H 1.08994 * 108.11622 * 124.63076 * 21 12 11 44 44 H 1.09000 * 110.56397 * 274.16510 * 24 6 4 45 45 H 1.08991 * 110.56687 * 37.02438 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.6235 -1.7640 1.1235 6 7 1.8247 -0.1751 2.4497 7 6 2.1687 -0.8055 3.7367 8 6 1.7634 0.2001 4.8502 9 1 1.4171 -0.2933 5.7583 10 6 2.9810 1.0915 5.0970 11 6 2.6304 2.2830 5.9712 12 7 1.3333 2.8466 5.6822 13 6 1.0208 4.0163 6.3218 14 1 0.4240 4.7635 5.8199 15 6 1.4710 4.2416 7.6155 16 7 1.9541 3.2453 8.3271 17 14 1.3911 5.9588 8.3464 18 1 0.8116 6.8947 7.3496 19 1 0.5389 5.9401 9.5624 20 1 2.7599 6.4069 8.7081 21 6 0.3319 2.3139 4.7954 22 6 0.6491 1.0007 4.1485 23 1 -0.2586 0.3981 4.1155 24 6 1.2136 1.1446 2.7213 25 6 2.0399 -0.7213 -1.2493 26 9 1.5735 -2.0402 -1.2493 27 9 1.5736 -0.0617 -2.3916 28 9 3.4390 -0.7218 -1.2491 29 1 -0.3633 0.3391 0.9702 30 1 -0.3633 0.6708 -0.7786 31 1 -0.3633 -1.0096 -0.1915 32 1 3.1301 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6149 -1.7367 3.8556 36 1 3.2402 -1.0000 3.7820 37 1 3.7627 0.5012 5.5750 38 1 3.3507 1.4613 4.1407 39 1 3.3868 3.0560 5.8362 40 1 2.6466 1.9549 7.0106 41 1 2.2690 3.4028 9.2309 42 1 0.1532 3.0455 4.0073 43 1 -0.5937 2.1990 5.3595 44 1 1.9681 1.9305 2.6854 45 1 0.4123 1.3489 2.0113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088177942.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:53 Heat of formation + Delta-G solvation = -154.540738 kcal Electronic energy + Delta-G solvation = -31315.626178 eV Core-core repulsion = 26726.040226 eV Total energy + Delta-G solvation = -4589.585953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.23158 -47.72882 -47.62135 -40.84950 -38.72075 -35.90420 -35.56083 -32.59741 -31.59364 -30.32721 -28.20983 -27.80196 -26.48475 -25.73264 -24.18179 -22.68737 -21.96381 -21.33474 -19.88750 -18.51610 -18.44482 -17.97879 -17.42800 -17.15394 -16.49436 -15.89766 -15.46395 -15.02506 -14.84200 -14.51326 -14.34181 -14.10046 -14.06559 -13.87780 -13.82209 -13.78780 -13.69598 -13.63646 -13.41435 -13.00738 -12.89863 -12.83228 -12.44756 -12.33147 -12.18502 -11.84147 -11.76185 -11.51298 -11.19094 -11.08917 -10.86855 -10.55711 -10.30760 -10.24583 -10.03400 -9.78183 -9.72650 -9.59981 -8.71686 -8.59746 -6.60528 -5.62845 -3.44603 2.29481 2.37081 2.81211 3.31954 3.40356 3.42078 3.47225 3.78456 3.81886 4.27153 4.41580 4.43280 4.55093 4.60594 4.77317 4.95207 5.08800 5.18851 5.21645 5.23118 5.29163 5.33549 5.38854 5.45742 5.53308 5.70426 5.75176 5.77761 5.81557 5.96975 6.03104 6.08753 6.27680 6.47531 6.51261 6.59904 6.71939 6.79830 7.25759 7.33537 7.73689 7.87564 7.93802 8.53073 9.25897 9.91571 10.23581 11.18245 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.025859 B = 0.003002 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.533047 B = 9325.028396 C = 9731.315569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.167 4.167 4 C 0.541 3.459 5 O -0.528 6.528 6 N -0.606 5.606 7 C 0.109 3.891 8 C -0.079 4.079 9 H 0.100 0.900 10 C -0.122 4.122 11 C 0.153 3.847 12 N -0.585 5.585 13 C -0.269 4.269 14 H 0.063 0.937 15 C 0.011 3.989 16 N -0.893 5.893 17 Si 0.903 3.097 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.289 1.289 21 C 0.176 3.824 22 C -0.099 4.099 23 H 0.075 0.925 24 C 0.094 3.906 25 C 0.476 3.524 26 F -0.171 7.171 27 F -0.181 7.181 28 F -0.174 7.174 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.018 0.982 40 H 0.085 0.915 41 H 0.253 0.747 42 H 0.012 0.988 43 H 0.025 0.975 44 H 0.083 0.917 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 -6.168 -15.807 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.131 4.131 3 C -0.223 4.223 4 C 0.327 3.673 5 O -0.404 6.404 6 N -0.339 5.339 7 C -0.012 4.012 8 C -0.098 4.098 9 H 0.119 0.881 10 C -0.161 4.161 11 C 0.028 3.972 12 N -0.310 5.310 13 C -0.399 4.399 14 H 0.081 0.919 15 C -0.189 4.189 16 N -0.537 5.537 17 Si 0.733 3.267 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.215 1.215 21 C 0.050 3.950 22 C -0.118 4.118 23 H 0.094 0.906 24 C -0.027 4.027 25 C 0.421 3.579 26 F -0.153 7.153 27 F -0.162 7.162 28 F -0.155 7.155 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.030 0.970 43 H 0.043 0.957 44 H 0.101 0.899 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.954 -6.862 -15.846 17.378 hybrid contribution 0.134 0.786 0.196 0.821 sum -1.820 -6.076 -15.649 16.886 Atomic orbital electron populations 1.22059 0.89005 1.04629 1.05285 1.22005 1.00843 0.99040 0.91217 1.22334 1.03084 0.90993 1.05931 1.19278 0.79939 0.85038 0.83030 1.90791 1.41178 1.22732 1.85725 1.48484 1.60577 1.19808 1.04985 1.22502 1.00840 0.96302 0.81587 1.22064 0.96268 0.94895 0.96614 0.88145 1.21733 0.95975 0.97971 1.00371 1.20344 0.85348 0.91393 1.00091 1.42559 1.11966 1.26258 1.50228 1.19147 1.32639 0.93430 0.94714 0.91934 1.25250 1.00562 0.97356 0.95703 1.69847 1.45230 1.29285 1.09321 0.86221 0.77406 0.84184 0.78933 1.20157 1.21607 1.21513 1.19274 0.92615 0.90330 0.92787 1.21637 0.98192 0.98882 0.93111 0.90634 1.22931 0.97633 0.84607 0.97578 1.19765 0.75902 0.77686 0.84552 1.93198 1.88268 1.37149 1.96641 1.93166 1.88575 1.80873 1.53587 1.93196 1.29324 1.96332 1.96669 0.89180 0.89723 0.90585 0.90646 0.89933 0.88235 0.91573 0.91001 0.92196 0.93640 0.96418 0.89791 0.93647 0.96985 0.95723 0.89860 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.03 37.16 0.30 -1.00 16 2 C -0.13 -1.39 0.32 -155.66 -0.05 -1.44 16 3 C -0.17 -1.53 7.86 37.16 0.29 -1.24 16 4 C 0.54 7.58 6.34 -10.98 -0.07 7.51 16 5 O -0.53 -9.24 15.20 5.56 0.08 -9.16 16 6 N -0.61 -7.95 3.32 -169.60 -0.56 -8.52 16 7 C 0.11 1.49 6.25 -2.28 -0.01 1.48 16 8 C -0.08 -1.19 3.60 -88.81 -0.32 -1.51 16 9 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 10 C -0.12 -2.09 4.83 -27.35 -0.13 -2.22 16 11 C 0.15 3.39 5.22 -5.76 -0.03 3.36 16 12 N -0.59 -13.44 3.20 -179.51 -0.57 -14.01 16 13 C -0.27 -6.96 9.25 -15.06 -0.14 -7.10 16 14 H 0.06 1.60 7.87 -52.49 -0.41 1.19 16 15 C 0.01 0.29 5.14 -17.43 -0.09 0.20 16 16 N -0.89 -24.53 10.73 55.49 0.60 -23.94 16 17 Si 0.90 20.77 29.58 -169.99 -5.03 15.74 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.18 3.27 5.75 -6.97 -0.04 3.23 16 22 C -0.10 -1.42 2.83 -91.03 -0.26 -1.68 16 23 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 24 C 0.09 1.14 3.46 -2.65 -0.01 1.13 16 25 C 0.48 5.91 1.96 37.16 0.07 5.98 16 26 F -0.17 -2.37 15.55 2.25 0.04 -2.34 16 27 F -0.18 -1.98 16.48 2.25 0.04 -1.95 16 28 F -0.17 -2.44 16.05 2.25 0.04 -2.41 16 29 H 0.09 0.71 5.46 -51.93 -0.28 0.43 16 30 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 31 H 0.08 0.67 7.52 -51.93 -0.39 0.28 16 32 H 0.07 0.75 7.80 -51.93 -0.41 0.34 16 33 H 0.08 0.61 7.80 -51.93 -0.41 0.21 16 34 H 0.10 0.87 4.06 -51.93 -0.21 0.66 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.02 7.78 -51.93 -0.40 0.61 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.04 0.75 6.71 -51.93 -0.35 0.40 16 39 H 0.02 0.43 8.12 -51.93 -0.42 0.00 16 40 H 0.08 2.15 5.66 -51.92 -0.29 1.85 16 41 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 42 H 0.01 0.22 7.81 -51.92 -0.41 -0.18 16 43 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 44 H 0.08 1.09 6.47 -51.93 -0.34 0.75 16 45 H 0.08 0.80 4.47 -51.93 -0.23 0.57 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -29.83 346.86 -6.85 -36.68 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.22 Total: -2.03 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -0.49 Total: 6.70 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.54 Total: -46.47 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 9 Polarization: -6.80 SS G_CDS: 0.11 Total: -6.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.83 -6.85 -36.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088177942.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.860 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds