Wall clock time and date at job start Tue Mar 31 2020 17:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47636 * 2 1 4 4 H 1.08995 * 109.47879 * 173.98867 * 3 2 1 5 5 C 1.53002 * 109.46892 * 53.98725 * 3 2 1 6 6 C 1.52994 * 109.47406 * 66.58634 * 5 3 2 7 7 F 1.39902 * 109.47301 * 55.45887 * 6 5 3 8 8 F 1.39900 * 109.47579 * 175.46161 * 6 5 3 9 9 F 1.39903 * 109.47134 * 295.46724 * 6 5 3 10 10 C 1.50699 * 109.47000 * 293.98895 * 3 2 1 11 11 O 1.21295 * 119.99987 * 115.89043 * 10 3 2 12 12 N 1.34771 * 120.00238 * 295.88764 * 10 3 2 13 13 C 1.46502 * 120.00234 * 185.21440 * 12 10 3 14 14 H 1.08998 * 110.56076 * 36.73798 * 13 12 10 15 15 C 1.54855 * 110.62552 * 159.81005 * 13 12 10 16 16 C 1.55837 * 103.44493 * 118.49321 * 15 13 12 17 17 H 1.09004 * 115.56152 * 159.56469 * 16 15 13 18 18 C 1.55848 * 105.06211 * 288.16975 * 16 15 13 19 19 C 1.56687 * 103.59949 * 71.59714 * 18 16 15 20 20 C 1.55840 * 110.62763 * 273.83482 * 13 12 10 21 21 H 1.09006 * 115.56055 * 82.69840 * 20 13 12 22 22 N 1.50233 * 101.05389 * 32.93313 * 16 15 13 23 23 C 1.36944 * 130.83120 * 125.32003 * 22 16 15 24 24 H 1.07998 * 120.00013 * 336.32868 * 23 22 16 25 25 C 1.38814 * 119.99621 * 156.33533 * 23 22 16 26 26 N 1.31621 * 119.99644 * 154.68190 * 25 23 22 27 27 Si 1.86793 * 120.00043 * 334.67324 * 25 23 22 28 28 H 1.48504 * 109.46929 * 84.61543 * 27 25 23 29 29 H 1.48501 * 109.47312 * 204.61600 * 27 25 23 30 30 H 1.48500 * 109.47559 * 324.61767 * 27 25 23 31 31 H 1.08998 * 109.47211 * 178.19747 * 1 2 3 32 32 H 1.09003 * 109.47114 * 298.19564 * 1 2 3 33 33 H 1.08995 * 109.47132 * 58.19433 * 1 2 3 34 34 H 1.09005 * 109.47177 * 240.00086 * 2 1 3 35 35 H 1.09004 * 109.47029 * 120.00356 * 2 1 3 36 36 H 1.09007 * 109.47253 * 186.58841 * 5 3 2 37 37 H 1.08997 * 109.47150 * 306.58262 * 5 3 2 38 38 H 0.97003 * 120.00048 * 5.21097 * 12 10 3 39 39 H 1.09007 * 110.62267 * 236.97953 * 15 13 12 40 40 H 1.08999 * 110.62672 * 359.97438 * 15 13 12 41 41 H 1.08996 * 110.62755 * 190.31408 * 18 16 15 42 42 H 1.08992 * 110.62791 * 313.18198 * 18 16 15 43 43 H 1.08994 * 110.79210 * 242.24077 * 19 18 16 44 44 H 1.08999 * 111.27085 * 118.64738 * 19 18 16 45 45 H 0.97002 * 119.99968 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1247 1.4443 0.1076 5 6 1.4105 2.2060 1.1668 6 6 1.9239 1.6315 2.4886 7 9 3.3225 1.6658 2.5001 8 9 1.4300 2.3946 3.5520 9 9 1.4890 0.3085 2.6224 10 6 1.6629 2.1085 -1.2981 11 8 0.9000 3.0515 -1.2966 12 7 2.1734 1.6567 -2.4607 13 6 1.8987 2.3728 -3.7089 14 1 1.8792 3.4488 -3.5365 15 6 2.9472 2.0087 -4.7887 16 6 2.0931 1.3579 -5.9182 17 1 2.5549 1.3389 -6.9054 18 6 1.6606 -0.0279 -5.3514 19 6 0.6036 0.3366 -4.2536 20 6 0.5540 1.8923 -4.3329 21 1 -0.3452 2.3555 -3.9265 22 7 0.8120 2.1327 -5.7933 23 6 0.1059 2.8508 -6.7211 24 1 0.6061 3.2463 -7.5927 25 6 -1.2529 3.0704 -6.5413 26 7 -1.8298 4.1153 -7.0962 27 14 -2.2627 1.8830 -5.5119 28 1 -2.1499 2.2517 -4.0778 29 1 -3.6859 1.9520 -5.9302 30 1 -1.7552 0.5015 -5.7092 31 1 -0.3633 -1.0271 -0.0323 32 1 -0.3633 0.4856 0.9057 33 1 -0.3633 0.5416 -0.8733 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6806 3.2599 1.0994 37 1 0.3260 2.1055 1.1239 38 1 2.7228 0.8573 -2.4710 39 1 3.4487 2.9048 -5.1545 40 1 3.6718 1.2957 -4.3954 41 1 1.2100 -0.6390 -6.1334 42 1 2.5115 -0.5430 -4.9056 43 1 0.9410 0.0129 -3.2691 44 1 -0.3716 -0.0910 -4.4863 45 1 -2.7794 4.2686 -6.9708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109987985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:58 Heat of formation + Delta-G solvation = -146.917699 kcal Electronic energy + Delta-G solvation = -31177.058664 eV Core-core repulsion = 26587.803271 eV Total energy + Delta-G solvation = -4589.255393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.39996 -47.88558 -47.84452 -40.49821 -38.96712 -35.84156 -34.10948 -32.45426 -30.89663 -29.69425 -29.45873 -28.52683 -26.78159 -24.07127 -23.73962 -22.54633 -21.52678 -20.15836 -19.52634 -19.04176 -18.84844 -18.71407 -17.52293 -17.00931 -16.63771 -15.98128 -15.90708 -15.57744 -15.19902 -14.72170 -14.47797 -14.37746 -14.21611 -14.01977 -13.92285 -13.79177 -13.57561 -13.29693 -13.18407 -12.93906 -12.45342 -12.42616 -12.25493 -12.02557 -11.81928 -11.44071 -11.37336 -11.24618 -11.20372 -11.06593 -11.00363 -10.88826 -10.55414 -10.34177 -9.90423 -9.70232 -9.56342 -9.42486 -8.87750 -8.50567 -7.13013 -6.00053 -3.28513 2.46628 2.68596 3.16602 3.36131 3.48073 3.50740 3.63077 3.76041 3.81952 4.36341 4.49247 4.54391 4.60385 4.72994 4.94013 5.02538 5.13570 5.16786 5.21108 5.27599 5.42969 5.50557 5.53567 5.55845 5.59476 5.77669 5.78007 5.82328 5.86026 5.93614 5.95756 6.12801 6.21543 6.30770 6.42003 6.46734 6.61034 6.68336 6.88126 6.91993 7.48235 7.63857 8.28403 8.32843 8.71174 9.62580 10.27106 11.15846 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018285 B = 0.003569 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.917404 B = 7843.775646 C = 8253.093355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.130 4.130 3 C -0.113 4.113 4 H 0.108 0.892 5 C -0.154 4.154 6 C 0.453 3.547 7 F -0.185 7.185 8 F -0.184 7.184 9 F -0.179 7.179 10 C 0.519 3.481 11 O -0.532 6.532 12 N -0.712 5.712 13 C 0.130 3.870 14 H 0.089 0.911 15 C -0.133 4.133 16 C 0.134 3.866 17 H 0.096 0.904 18 C -0.131 4.131 19 C -0.143 4.143 20 C 0.118 3.882 21 H 0.100 0.900 22 N -0.598 5.598 23 C -0.236 4.236 24 H 0.090 0.910 25 C 0.031 3.969 26 N -0.900 5.900 27 Si 0.867 3.133 28 H -0.282 1.282 29 H -0.302 1.302 30 H -0.266 1.266 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.395 0.605 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.344 -9.889 17.288 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.167 4.167 3 C -0.134 4.134 4 H 0.126 0.874 5 C -0.192 4.192 6 C 0.399 3.601 7 F -0.166 7.166 8 F -0.165 7.165 9 F -0.161 7.161 10 C 0.304 3.696 11 O -0.408 6.408 12 N -0.363 5.363 13 C 0.024 3.976 14 H 0.107 0.893 15 C -0.173 4.173 16 C 0.027 3.973 17 H 0.114 0.886 18 C -0.171 4.171 19 C -0.182 4.182 20 C 0.010 3.990 21 H 0.118 0.882 22 N -0.320 5.320 23 C -0.363 4.363 24 H 0.108 0.892 25 C -0.169 4.169 26 N -0.542 5.542 27 Si 0.697 3.303 28 H -0.210 1.210 29 H -0.230 1.230 30 H -0.192 1.192 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.230 0.770 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.546 -8.978 17.083 21.992 hybrid contribution -0.395 -1.115 0.807 1.432 sum 10.151 -10.093 17.890 22.912 Atomic orbital electron populations 1.21896 0.94813 1.02428 1.02540 1.21814 0.97487 0.93365 1.04067 1.21366 1.02545 0.96786 0.92714 0.87405 1.22794 1.05241 1.02944 0.88213 1.20617 0.75531 0.76134 0.87786 1.93175 1.30243 1.96279 1.96916 1.93195 1.87543 1.75663 1.60121 1.93139 1.89422 1.37158 1.96365 1.20093 0.80793 0.83874 0.84883 1.90766 1.34261 1.28642 1.87174 1.46175 1.52870 1.30141 1.07105 1.22559 0.97018 0.96731 0.81253 0.89311 1.23165 0.96465 1.00840 0.96836 1.23011 0.88473 0.89861 0.95941 0.88553 1.23263 0.97569 0.98103 0.98118 1.23450 0.99254 0.97980 0.97524 1.23474 0.96050 0.93462 0.85978 0.88226 1.46692 1.24964 1.57002 1.03368 1.18516 0.89832 1.24808 1.03125 0.89215 1.25104 0.96329 0.97481 0.97963 1.69878 1.11757 1.25403 1.47144 0.87093 0.79411 0.83881 0.79910 1.20957 1.22984 1.19166 0.92008 0.92330 0.91979 0.90732 0.89514 0.86365 0.85953 0.76992 0.91092 0.91886 0.92296 0.92873 0.92238 0.92193 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.03 37.16 0.34 -1.28 16 2 C -0.13 -1.10 5.06 -26.74 -0.14 -1.24 16 3 C -0.11 -1.07 2.42 -91.77 -0.22 -1.29 16 4 H 0.11 0.82 7.49 -51.93 -0.39 0.43 16 5 C -0.15 -1.47 3.87 -26.73 -0.10 -1.57 16 6 C 0.45 4.16 3.14 37.15 0.12 4.28 16 7 F -0.18 -1.74 16.50 2.25 0.04 -1.70 16 8 F -0.18 -1.87 17.32 2.25 0.04 -1.83 16 9 F -0.18 -1.65 13.68 2.25 0.03 -1.62 16 10 C 0.52 7.02 6.10 -10.99 -0.07 6.95 16 11 O -0.53 -9.62 15.71 5.54 0.09 -9.53 16 12 N -0.71 -9.16 3.52 -51.40 -0.18 -9.34 16 13 C 0.13 2.21 3.04 -65.44 -0.20 2.01 16 14 H 0.09 1.74 7.77 -51.93 -0.40 1.34 16 15 C -0.13 -1.97 6.20 -24.24 -0.15 -2.12 16 16 C 0.13 2.37 5.48 -62.81 -0.34 2.02 16 17 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 18 C -0.13 -2.07 6.49 -23.22 -0.15 -2.22 16 19 C -0.14 -2.51 6.17 -23.22 -0.14 -2.65 16 20 C 0.12 2.46 3.52 -62.80 -0.22 2.24 16 21 H 0.10 2.45 5.15 -51.93 -0.27 2.18 16 22 N -0.60 -13.78 2.62 -145.82 -0.38 -14.16 16 23 C -0.24 -6.56 10.85 -15.06 -0.16 -6.73 16 24 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 25 C 0.03 0.91 5.46 -17.43 -0.10 0.81 16 26 N -0.90 -27.76 13.97 55.49 0.78 -26.98 16 27 Si 0.87 22.48 24.71 -169.99 -4.20 18.28 16 28 H -0.28 -7.30 6.12 56.52 0.35 -6.95 16 29 H -0.30 -7.98 7.11 56.52 0.40 -7.57 16 30 H -0.27 -6.65 5.85 56.52 0.33 -6.32 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.56 5.83 -51.93 -0.30 0.26 16 33 H 0.06 0.79 7.36 -51.93 -0.38 0.41 16 34 H 0.07 0.57 7.55 -51.93 -0.39 0.17 16 35 H 0.09 0.66 5.85 -51.93 -0.30 0.36 16 36 H 0.12 1.14 7.96 -51.93 -0.41 0.73 16 37 H 0.12 1.22 5.99 -51.93 -0.31 0.91 16 38 H 0.40 3.83 7.47 -40.82 -0.30 3.52 16 39 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 40 H 0.06 0.72 7.35 -51.93 -0.38 0.34 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.65 7.82 -51.93 -0.41 0.25 16 43 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 44 H 0.06 1.18 5.97 -51.93 -0.31 0.87 16 45 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 348.85 15.07 5.26 5.26 Total: -1.00 -32.42 348.85 -6.36 -38.77 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.28 Total: 3.65 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.54 Total: -0.79 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: 0.21 Total: -50.49 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 9 Polarization: -5.26 SS G_CDS: 0.11 Total: -5.15 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.20 Total: 18.28 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.42 -6.36 -38.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109987985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.145 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds