Wall clock time and date at job start Tue Mar 31 2020 17:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47636 * 2 1 4 4 H 1.08995 * 109.47879 * 173.98867 * 3 2 1 5 5 C 1.53002 * 109.46892 * 53.98725 * 3 2 1 6 6 C 1.52994 * 109.47406 * 66.58634 * 5 3 2 7 7 F 1.39902 * 109.47301 * 55.45887 * 6 5 3 8 8 F 1.39900 * 109.47579 * 175.46161 * 6 5 3 9 9 F 1.39903 * 109.47134 * 295.46724 * 6 5 3 10 10 C 1.50699 * 109.47000 * 293.98895 * 3 2 1 11 11 O 1.21295 * 119.99987 * 115.89043 * 10 3 2 12 12 N 1.34771 * 120.00238 * 295.88764 * 10 3 2 13 13 C 1.46502 * 120.00234 * 185.21440 * 12 10 3 14 14 H 1.08998 * 110.56076 * 36.73798 * 13 12 10 15 15 C 1.54855 * 110.62552 * 159.81005 * 13 12 10 16 16 C 1.55837 * 103.44493 * 118.49321 * 15 13 12 17 17 H 1.09004 * 115.56152 * 159.56469 * 16 15 13 18 18 C 1.55848 * 105.06211 * 288.16975 * 16 15 13 19 19 C 1.56687 * 103.59949 * 71.59714 * 18 16 15 20 20 C 1.55840 * 110.62763 * 273.83482 * 13 12 10 21 21 H 1.09006 * 115.56055 * 82.69840 * 20 13 12 22 22 N 1.50233 * 101.05389 * 32.93313 * 16 15 13 23 23 C 1.36944 * 130.83120 * 125.32003 * 22 16 15 24 24 H 1.07998 * 120.00013 * 336.32868 * 23 22 16 25 25 C 1.38814 * 119.99621 * 156.33533 * 23 22 16 26 26 N 1.31621 * 119.99644 * 154.68190 * 25 23 22 27 27 Si 1.86793 * 120.00043 * 334.67324 * 25 23 22 28 28 H 1.48504 * 109.46929 * 84.61543 * 27 25 23 29 29 H 1.48501 * 109.47312 * 204.61600 * 27 25 23 30 30 H 1.48500 * 109.47559 * 324.61767 * 27 25 23 31 31 H 1.08998 * 109.47211 * 178.19747 * 1 2 3 32 32 H 1.09003 * 109.47114 * 298.19564 * 1 2 3 33 33 H 1.08995 * 109.47132 * 58.19433 * 1 2 3 34 34 H 1.09005 * 109.47177 * 240.00086 * 2 1 3 35 35 H 1.09004 * 109.47029 * 120.00356 * 2 1 3 36 36 H 1.09007 * 109.47253 * 186.58841 * 5 3 2 37 37 H 1.08997 * 109.47150 * 306.58262 * 5 3 2 38 38 H 0.97003 * 120.00048 * 5.21097 * 12 10 3 39 39 H 1.09007 * 110.62267 * 236.97953 * 15 13 12 40 40 H 1.08999 * 110.62672 * 359.97438 * 15 13 12 41 41 H 1.08996 * 110.62755 * 190.31408 * 18 16 15 42 42 H 1.08992 * 110.62791 * 313.18198 * 18 16 15 43 43 H 1.08994 * 110.79210 * 242.24077 * 19 18 16 44 44 H 1.08999 * 111.27085 * 118.64738 * 19 18 16 45 45 H 0.97002 * 119.99968 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1247 1.4443 0.1076 5 6 1.4105 2.2060 1.1668 6 6 1.9239 1.6315 2.4886 7 9 3.3225 1.6658 2.5001 8 9 1.4300 2.3946 3.5520 9 9 1.4890 0.3085 2.6224 10 6 1.6629 2.1085 -1.2981 11 8 0.9000 3.0515 -1.2966 12 7 2.1734 1.6567 -2.4607 13 6 1.8987 2.3728 -3.7089 14 1 1.8792 3.4488 -3.5365 15 6 2.9472 2.0087 -4.7887 16 6 2.0931 1.3579 -5.9182 17 1 2.5549 1.3389 -6.9054 18 6 1.6606 -0.0279 -5.3514 19 6 0.6036 0.3366 -4.2536 20 6 0.5540 1.8923 -4.3329 21 1 -0.3452 2.3555 -3.9265 22 7 0.8120 2.1327 -5.7933 23 6 0.1059 2.8508 -6.7211 24 1 0.6061 3.2463 -7.5927 25 6 -1.2529 3.0704 -6.5413 26 7 -1.8298 4.1153 -7.0962 27 14 -2.2627 1.8830 -5.5119 28 1 -2.1499 2.2517 -4.0778 29 1 -3.6859 1.9520 -5.9302 30 1 -1.7552 0.5015 -5.7092 31 1 -0.3633 -1.0271 -0.0323 32 1 -0.3633 0.4856 0.9057 33 1 -0.3633 0.5416 -0.8733 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.6806 3.2599 1.0994 37 1 0.3260 2.1055 1.1239 38 1 2.7228 0.8573 -2.4710 39 1 3.4487 2.9048 -5.1545 40 1 3.6718 1.2957 -4.3954 41 1 1.2100 -0.6390 -6.1334 42 1 2.5115 -0.5430 -4.9056 43 1 0.9410 0.0129 -3.2691 44 1 -0.3716 -0.0910 -4.4863 45 1 -2.7794 4.2686 -6.9708 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109987985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:58 Heat of formation + Delta-G solvation = -168.357832 kcal Electronic energy + Delta-G solvation = -31177.988378 eV Core-core repulsion = 26587.803271 eV Total energy + Delta-G solvation = -4590.185107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.13668 -48.63078 -48.57335 -41.75267 -40.25438 -36.74795 -35.51292 -34.42581 -31.66018 -31.40850 -30.89014 -29.85467 -27.76047 -25.90895 -24.47548 -23.60209 -22.79311 -21.65442 -20.73033 -20.35859 -19.59827 -19.54260 -18.88340 -18.32169 -17.94640 -17.24957 -16.95403 -16.74325 -16.19968 -15.82301 -15.63040 -15.47699 -15.25802 -15.07091 -14.94610 -14.79420 -14.72375 -14.62928 -14.24333 -14.09718 -13.94578 -13.67430 -13.34341 -13.18602 -13.16237 -12.82340 -12.71370 -12.65733 -12.47701 -12.29823 -12.24950 -11.97894 -11.84014 -11.75763 -11.59846 -11.37924 -10.97887 -10.79901 -10.74595 -10.01446 -9.04987 -8.23856 -5.44518 1.25052 1.30139 1.39820 1.61800 1.67746 2.16535 2.39296 2.83590 2.93453 3.01178 3.08668 3.25021 3.57416 3.74581 3.77973 3.86630 3.93827 4.00921 4.13856 4.25735 4.28773 4.38702 4.43378 4.51487 4.54845 4.57707 4.71258 4.78067 4.83351 4.85092 4.94176 5.02330 5.10892 5.12886 5.16095 5.28504 5.33771 5.37971 5.44153 5.63002 5.71122 6.09513 6.60226 6.62641 7.30698 7.46559 8.26248 8.96939 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018285 B = 0.003569 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.917404 B = 7843.775646 C = 8253.093355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.101 4.101 4 H 0.139 0.861 5 C -0.155 4.155 6 C 0.463 3.537 7 F -0.182 7.182 8 F -0.191 7.191 9 F -0.177 7.177 10 C 0.517 3.483 11 O -0.584 6.584 12 N -0.696 5.696 13 C 0.144 3.856 14 H 0.052 0.948 15 C -0.116 4.116 16 C 0.125 3.875 17 H 0.104 0.896 18 C -0.118 4.118 19 C -0.136 4.136 20 C 0.102 3.898 21 H 0.051 0.949 22 N -0.627 5.627 23 C -0.213 4.213 24 H 0.062 0.938 25 C -0.031 4.031 26 N -0.952 5.952 27 Si 0.926 3.074 28 H -0.291 1.291 29 H -0.312 1.312 30 H -0.249 1.249 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.029 0.971 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.419 0.581 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.050 0.950 42 H 0.109 0.891 43 H 0.096 0.904 44 H 0.034 0.966 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.744 -13.452 19.334 27.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.163 4.163 3 C -0.123 4.123 4 H 0.157 0.843 5 C -0.193 4.193 6 C 0.409 3.591 7 F -0.163 7.163 8 F -0.172 7.172 9 F -0.158 7.158 10 C 0.304 3.696 11 O -0.464 6.464 12 N -0.349 5.349 13 C 0.036 3.964 14 H 0.070 0.930 15 C -0.155 4.155 16 C 0.020 3.980 17 H 0.122 0.878 18 C -0.157 4.157 19 C -0.175 4.175 20 C -0.005 4.005 21 H 0.069 0.931 22 N -0.351 5.351 23 C -0.342 4.342 24 H 0.080 0.920 25 C -0.226 4.226 26 N -0.599 5.599 27 Si 0.756 3.244 28 H -0.219 1.219 29 H -0.241 1.241 30 H -0.173 1.173 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.258 0.742 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.069 0.931 42 H 0.127 0.873 43 H 0.114 0.886 44 H 0.053 0.947 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 14.024 -12.631 19.165 26.898 hybrid contribution -1.353 0.045 0.211 1.370 sum 12.670 -12.587 19.377 26.352 Atomic orbital electron populations 1.21914 0.96412 1.02584 1.01039 1.21872 0.95959 0.92548 1.05950 1.21376 1.04293 0.96840 0.89749 0.84293 1.22755 1.04894 1.02934 0.88750 1.20396 0.75479 0.76023 0.87188 1.93182 1.30007 1.96271 1.96876 1.93186 1.87682 1.75928 1.60408 1.93144 1.89422 1.36906 1.96324 1.20842 0.79478 0.83069 0.86192 1.90764 1.36531 1.31128 1.87948 1.45902 1.52862 1.30606 1.05518 1.22050 0.95685 0.95165 0.83451 0.92973 1.23091 0.95996 1.01854 0.94574 1.23375 0.86184 0.90675 0.97731 0.87830 1.23235 0.98539 0.96720 0.97229 1.23410 0.99116 0.94632 1.00326 1.23498 0.96251 0.95903 0.84876 0.93125 1.46867 1.26404 1.57945 1.03921 1.18494 0.89814 1.23344 1.02568 0.92020 1.25648 0.97703 0.99030 1.00262 1.69996 1.11673 1.27557 1.50628 0.86141 0.77467 0.82860 0.77896 1.21915 1.24053 1.17317 0.90861 0.92409 0.95169 0.88667 0.87757 0.86858 0.86822 0.74242 0.91457 0.86470 0.93136 0.87273 0.88574 0.94709 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.03 71.98 0.65 -2.26 16 2 C -0.13 -1.59 5.06 30.59 0.15 -1.44 16 3 C -0.10 -1.58 2.42 -11.54 -0.03 -1.61 16 4 H 0.14 1.39 7.49 -2.39 -0.02 1.37 16 5 C -0.15 -2.68 3.87 30.59 0.12 -2.56 16 6 C 0.46 7.33 3.14 71.98 0.23 7.56 16 7 F -0.18 -2.81 16.50 44.97 0.74 -2.07 16 8 F -0.19 -3.56 17.32 44.97 0.78 -2.78 16 9 F -0.18 -2.70 13.68 44.97 0.62 -2.08 16 10 C 0.52 12.93 6.10 87.66 0.53 13.46 16 11 O -0.58 -21.37 15.71 -3.07 -0.05 -21.42 16 12 N -0.70 -15.37 3.52 -434.91 -1.53 -16.90 16 13 C 0.14 4.62 3.04 46.61 0.14 4.76 16 14 H 0.05 2.07 7.77 -2.39 -0.02 2.05 16 15 C -0.12 -2.96 6.20 32.21 0.20 -2.76 16 16 C 0.13 4.03 5.48 46.23 0.25 4.29 16 17 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 18 C -0.12 -3.15 6.49 32.87 0.21 -2.94 16 19 C -0.14 -4.36 6.17 32.87 0.20 -4.16 16 20 C 0.10 4.21 3.52 46.23 0.16 4.37 16 21 H 0.05 2.59 5.15 -2.38 -0.01 2.58 16 22 N -0.63 -28.93 2.62 -615.26 -1.61 -30.54 16 23 C -0.21 -12.30 10.85 84.03 0.91 -11.39 16 24 H 0.06 3.80 8.06 -2.91 -0.02 3.78 16 25 C -0.03 -1.91 5.46 84.86 0.46 -1.45 16 26 N -0.95 -62.16 13.97 21.65 0.30 -61.86 16 27 Si 0.93 49.10 24.71 68.60 1.70 50.80 16 28 H -0.29 -15.65 6.12 99.48 0.61 -15.04 16 29 H -0.31 -16.78 7.11 99.48 0.71 -16.08 16 30 H -0.25 -12.26 5.85 99.48 0.58 -11.67 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.02 5.83 -2.39 -0.01 1.01 16 33 H 0.03 0.73 7.36 -2.39 -0.02 0.71 16 34 H 0.09 0.85 7.55 -2.38 -0.02 0.83 16 35 H 0.10 1.06 5.85 -2.38 -0.01 1.05 16 36 H 0.11 2.09 7.96 -2.38 -0.02 2.08 16 37 H 0.11 2.19 5.99 -2.39 -0.01 2.18 16 38 H 0.42 5.40 7.47 -92.71 -0.69 4.71 16 39 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 40 H 0.12 1.79 7.35 -2.39 -0.02 1.77 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.11 1.78 7.82 -2.39 -0.02 1.76 16 43 H 0.10 2.32 6.43 -2.39 -0.02 2.31 16 44 H 0.03 1.29 5.97 -2.39 -0.01 1.28 16 45 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 Total: -1.00 -78.55 348.85 5.27 -73.28 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.12 Total: 9.69 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 4.20 Total: 3.88 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -2.84 Total: -109.30 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 9 Polarization: -9.07 SS G_CDS: 2.14 Total: -6.93 kcal Atomic # 14 Polarization: 49.10 SS G_CDS: 1.70 Total: 50.80 kcal Total: -78.55 5.27 -73.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109987985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.079 kcal (2) G-P(sol) polarization free energy of solvation -78.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds