Wall clock time and date at job start Tue Mar 31 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46735 * 2 1 4 4 H 1.08996 * 109.46890 * 306.20654 * 3 2 1 5 5 C 1.53002 * 109.47087 * 66.20838 * 3 2 1 6 6 C 1.53004 * 109.46838 * 185.64300 * 5 3 2 7 7 F 1.39897 * 109.46965 * 64.64264 * 6 5 3 8 8 F 1.39904 * 109.46622 * 184.63946 * 6 5 3 9 9 F 1.39889 * 109.47348 * 304.64045 * 6 5 3 10 10 C 1.50703 * 109.46903 * 186.20584 * 3 2 1 11 11 O 1.21283 * 119.99843 * 274.52644 * 10 3 2 12 12 N 1.34776 * 119.99789 * 94.52094 * 10 3 2 13 13 C 1.46499 * 119.99733 * 179.72354 * 12 10 3 14 14 H 1.08997 * 110.55788 * 34.58213 * 13 12 10 15 15 C 1.54851 * 110.62926 * 271.67680 * 13 12 10 16 16 C 1.56222 * 103.27326 * 241.54866 * 15 13 12 17 17 H 1.08998 * 116.12229 * 159.09149 * 16 15 13 18 18 C 1.55835 * 104.99905 * 288.06160 * 16 15 13 19 19 C 1.54858 * 103.44608 * 71.88103 * 18 16 15 20 20 C 1.55845 * 110.62347 * 157.48172 * 13 12 10 21 21 H 1.08996 * 115.55993 * 318.92237 * 20 13 12 22 22 N 1.50239 * 101.05364 * 85.55109 * 20 13 12 23 23 C 1.36935 * 130.84148 * 233.94827 * 22 20 13 24 24 H 1.08005 * 119.99831 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00270 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99795 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00042 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47488 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.46950 * 119.99688 * 27 25 23 30 30 H 1.48496 * 109.47326 * 239.99881 * 27 25 23 31 31 H 1.08995 * 109.47267 * 293.79353 * 1 2 3 32 32 H 1.08998 * 109.47231 * 53.79595 * 1 2 3 33 33 H 1.09000 * 109.46931 * 173.79653 * 1 2 3 34 34 H 1.08991 * 109.47051 * 240.00313 * 2 1 3 35 35 H 1.08992 * 109.47167 * 119.99750 * 2 1 3 36 36 H 1.08999 * 109.46926 * 305.64232 * 5 3 2 37 37 H 1.08997 * 109.46979 * 65.64495 * 5 3 2 38 38 H 0.97001 * 120.00258 * 0.02562 * 12 10 3 39 39 H 1.09005 * 110.62665 * 0.02562 * 15 13 12 40 40 H 1.08998 * 110.62991 * 123.02170 * 15 13 12 41 41 H 1.09001 * 110.63103 * 313.39201 * 18 16 15 42 42 H 1.09008 * 110.62665 * 190.36992 * 18 16 15 43 43 H 1.08996 * 110.62838 * 241.50783 * 19 18 16 44 44 H 1.09004 * 110.76103 * 118.55132 * 19 18 16 45 45 H 0.97001 * 120.00381 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5887 1.9874 -0.8292 5 6 1.6613 2.1174 1.3199 6 6 2.0458 3.5973 1.2648 7 9 1.2865 4.2400 0.2812 8 9 1.7972 4.1902 2.5074 9 9 3.4050 3.7148 0.9555 10 6 3.5392 1.4454 -0.1536 11 8 4.2490 1.3260 0.8226 12 7 4.0911 1.5805 -1.3757 13 6 5.5485 1.5893 -1.5243 14 1 6.0113 0.9217 -0.7977 15 6 6.1034 3.0273 -1.3750 16 6 6.7688 3.3007 -2.7618 17 1 6.9162 4.3481 -3.0252 18 6 8.0525 2.4172 -2.7743 19 6 7.4980 0.9786 -2.9194 20 6 5.9548 1.1889 -2.9746 21 1 5.3841 0.3708 -3.4139 22 7 5.8698 2.5157 -3.6743 23 6 5.1844 2.8932 -4.7981 24 1 4.5797 2.1729 -5.3292 25 6 5.2676 4.2012 -5.2553 26 7 6.0050 5.0787 -4.6083 27 14 4.3332 4.7159 -6.7886 28 1 3.5838 3.5518 -7.3257 29 1 3.3802 5.8022 -6.4462 30 1 5.2921 5.2030 -7.8125 31 1 -0.3633 0.4146 0.9403 32 1 -0.3633 0.6070 -0.8292 33 1 -0.3633 -1.0217 -0.1111 34 1 1.8934 -0.5137 -0.8899 35 1 1.8934 -0.5138 0.8899 36 1 0.5868 2.0268 1.4791 37 1 2.1921 1.6344 2.1403 38 1 3.5234 1.6763 -2.1564 39 1 5.2943 3.7339 -1.1900 40 1 6.8436 3.0723 -0.5762 41 1 8.6018 2.5245 -1.8390 42 1 8.6858 2.6721 -3.6242 43 1 7.7723 0.3725 -2.0560 44 1 7.8559 0.5175 -3.8400 45 1 6.0635 5.9927 -4.9279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111285556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:04 Heat of formation + Delta-G solvation = -162.912746 kcal Electronic energy + Delta-G solvation = -31396.576518 eV Core-core repulsion = 26806.627528 eV Total energy + Delta-G solvation = -4589.948990 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.97404 -47.52069 -47.37803 -39.98200 -38.66517 -35.72550 -33.77121 -32.51620 -31.08643 -29.11797 -28.92783 -28.07636 -26.50382 -24.21332 -23.25258 -22.35562 -20.83945 -19.86545 -19.62655 -18.66133 -18.42302 -18.23288 -17.48036 -17.02117 -16.96862 -15.75894 -14.88015 -14.78164 -14.56033 -14.40697 -14.27224 -14.14135 -13.91897 -13.88511 -13.57099 -13.54000 -13.44708 -13.33009 -13.19351 -12.62787 -12.20461 -12.01563 -12.01228 -11.82325 -11.75235 -11.28887 -11.10159 -11.07832 -10.98237 -10.93524 -10.91254 -10.49498 -10.34902 -10.08329 -9.90599 -9.63484 -9.22600 -9.11990 -8.96143 -8.43343 -6.94930 -5.74813 -3.14099 2.82974 2.90236 3.35590 3.40197 3.43603 3.49460 3.84820 3.94640 4.14818 4.39940 4.64200 4.73724 4.76094 5.01048 5.11389 5.12944 5.16883 5.32934 5.37276 5.47834 5.55455 5.65482 5.71919 5.75652 5.83782 5.87915 6.00310 6.06999 6.13107 6.15816 6.33441 6.43807 6.51105 6.61687 6.76008 6.85851 6.97546 7.13382 7.35667 7.46987 7.79823 7.98686 8.17639 8.60618 9.06699 9.70140 10.51346 11.34139 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.004374 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.988760 B = 6399.510393 C = 6939.920251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.113 4.113 4 H 0.101 0.899 5 C -0.151 4.151 6 C 0.446 3.554 7 F -0.185 7.185 8 F -0.189 7.189 9 F -0.166 7.166 10 C 0.512 3.488 11 O -0.545 6.545 12 N -0.700 5.700 13 C 0.130 3.870 14 H 0.078 0.922 15 C -0.141 4.141 16 C 0.154 3.846 17 H 0.153 0.847 18 C -0.139 4.139 19 C -0.128 4.128 20 C 0.125 3.875 21 H 0.087 0.913 22 N -0.590 5.590 23 C -0.215 4.215 24 H 0.078 0.922 25 C -0.010 4.010 26 N -0.918 5.918 27 Si 0.914 3.086 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.114 0.886 37 H 0.121 0.879 38 H 0.402 0.598 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.054 0.946 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 -8.726 10.427 16.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.135 4.135 4 H 0.119 0.881 5 C -0.189 4.189 6 C 0.392 3.608 7 F -0.167 7.167 8 F -0.170 7.170 9 F -0.147 7.147 10 C 0.297 3.703 11 O -0.424 6.424 12 N -0.349 5.349 13 C 0.024 3.976 14 H 0.095 0.905 15 C -0.181 4.181 16 C 0.047 3.953 17 H 0.169 0.831 18 C -0.178 4.178 19 C -0.168 4.168 20 C 0.017 3.983 21 H 0.105 0.895 22 N -0.311 5.311 23 C -0.343 4.343 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.566 5.566 27 Si 0.745 3.255 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.236 0.764 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.619 -8.555 10.852 16.286 hybrid contribution -0.657 0.665 -1.165 1.494 sum -9.277 -7.890 9.686 15.561 Atomic orbital electron populations 1.21863 0.94857 1.02317 1.02205 1.21386 0.96374 0.93034 1.03686 1.21403 0.94729 0.99473 0.97911 0.88110 1.22842 1.05498 0.89018 1.01583 1.20622 0.75637 0.91189 0.73363 1.93189 1.76029 1.84450 1.63028 1.93163 1.94130 1.86473 1.43250 1.93294 1.32252 1.96602 1.92587 1.20206 0.89495 0.76713 0.83852 1.90662 1.63190 1.50429 1.38086 1.45996 1.08701 1.71977 1.08207 1.22624 0.78543 0.98031 0.98420 0.90451 1.23487 0.99981 0.95328 0.99353 1.23825 0.86413 0.99357 0.85672 0.83068 1.23068 0.99561 0.95827 0.99392 1.22882 0.96861 0.97285 0.99766 1.23142 0.94572 0.90431 0.90174 0.89515 1.46517 1.53235 1.03936 1.27365 1.19031 1.21014 0.94298 0.99927 0.90384 1.24701 1.00503 0.95978 0.99362 1.69475 1.43117 1.03619 1.40343 0.86013 0.78929 0.78212 0.82377 1.20619 1.21837 1.21815 0.92456 0.92082 0.92075 0.90586 0.90724 0.86739 0.86115 0.76359 0.92086 0.92938 0.93343 0.92667 0.93069 0.92495 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.55 37.16 0.35 -0.72 16 2 C -0.11 -0.95 5.37 -26.72 -0.14 -1.10 16 3 C -0.11 -1.30 2.14 -91.77 -0.20 -1.49 16 4 H 0.10 1.11 7.76 -51.93 -0.40 0.71 16 5 C -0.15 -1.60 4.52 -26.73 -0.12 -1.72 16 6 C 0.45 6.17 3.16 37.16 0.12 6.29 16 7 F -0.19 -2.66 16.89 2.25 0.04 -2.62 16 8 F -0.19 -2.57 17.32 2.25 0.04 -2.53 16 9 F -0.17 -2.92 14.15 2.25 0.03 -2.89 16 10 C 0.51 8.03 5.00 -10.98 -0.05 7.98 16 11 O -0.55 -10.13 14.79 5.55 0.08 -10.04 16 12 N -0.70 -11.72 5.08 -51.40 -0.26 -11.98 16 13 C 0.13 2.41 2.75 -65.44 -0.18 2.23 16 14 H 0.08 1.44 7.30 -51.93 -0.38 1.06 16 15 C -0.14 -2.95 6.25 -24.03 -0.15 -3.10 16 16 C 0.15 3.53 4.73 -62.59 -0.30 3.23 16 17 H 0.15 4.00 5.52 -51.93 -0.29 3.72 16 18 C -0.14 -2.77 6.44 -24.24 -0.16 -2.92 16 19 C -0.13 -2.31 6.44 -24.23 -0.16 -2.47 16 20 C 0.13 2.40 5.05 -62.80 -0.32 2.09 16 21 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 22 N -0.59 -13.83 2.99 -145.59 -0.44 -14.27 16 23 C -0.21 -5.56 10.59 -15.06 -0.16 -5.72 16 24 H 0.08 1.94 7.83 -52.48 -0.41 1.53 16 25 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 26 N -0.92 -25.81 10.47 55.49 0.58 -25.23 16 27 Si 0.91 21.36 29.55 -169.99 -5.02 16.34 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 31 H 0.06 0.34 6.78 -51.93 -0.35 -0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.86 6.50 -51.93 -0.34 0.52 16 37 H 0.12 1.29 7.65 -51.93 -0.40 0.89 16 38 H 0.40 6.53 8.62 -40.82 -0.35 6.18 16 39 H 0.06 1.40 7.98 -51.93 -0.41 0.99 16 40 H 0.05 1.04 7.82 -51.93 -0.41 0.64 16 41 H 0.05 0.87 7.82 -51.93 -0.41 0.46 16 42 H 0.05 1.15 8.14 -51.92 -0.42 0.73 16 43 H 0.05 0.82 7.82 -51.93 -0.41 0.41 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -30.20 364.73 -7.65 -37.85 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -6.64 Total: 7.65 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.55 Total: 2.23 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.12 Total: -51.48 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.11 Total: -8.04 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.20 -7.65 -37.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111285556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.065 kcal (2) G-P(sol) polarization free energy of solvation -30.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds