Wall clock time and date at job start Tue Mar 31 2020 17:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46735 * 2 1 4 4 H 1.08996 * 109.46890 * 306.20654 * 3 2 1 5 5 C 1.53002 * 109.47087 * 66.20838 * 3 2 1 6 6 C 1.53004 * 109.46838 * 185.64300 * 5 3 2 7 7 F 1.39897 * 109.46965 * 64.64264 * 6 5 3 8 8 F 1.39904 * 109.46622 * 184.63946 * 6 5 3 9 9 F 1.39889 * 109.47348 * 304.64045 * 6 5 3 10 10 C 1.50703 * 109.46903 * 186.20584 * 3 2 1 11 11 O 1.21283 * 119.99843 * 274.52644 * 10 3 2 12 12 N 1.34776 * 119.99789 * 94.52094 * 10 3 2 13 13 C 1.46499 * 119.99733 * 179.72354 * 12 10 3 14 14 H 1.08997 * 110.55788 * 34.58213 * 13 12 10 15 15 C 1.54851 * 110.62926 * 271.67680 * 13 12 10 16 16 C 1.56222 * 103.27326 * 241.54866 * 15 13 12 17 17 H 1.08998 * 116.12229 * 159.09149 * 16 15 13 18 18 C 1.55835 * 104.99905 * 288.06160 * 16 15 13 19 19 C 1.54858 * 103.44608 * 71.88103 * 18 16 15 20 20 C 1.55845 * 110.62347 * 157.48172 * 13 12 10 21 21 H 1.08996 * 115.55993 * 318.92237 * 20 13 12 22 22 N 1.50239 * 101.05364 * 85.55109 * 20 13 12 23 23 C 1.36935 * 130.84148 * 233.94827 * 22 20 13 24 24 H 1.08005 * 119.99831 * 359.97438 * 23 22 20 25 25 C 1.38811 * 120.00270 * 180.02562 * 23 22 20 26 26 N 1.31619 * 119.99795 * 359.97438 * 25 23 22 27 27 Si 1.86795 * 120.00042 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47488 * 0.02562 * 27 25 23 29 29 H 1.48508 * 109.46950 * 119.99688 * 27 25 23 30 30 H 1.48496 * 109.47326 * 239.99881 * 27 25 23 31 31 H 1.08995 * 109.47267 * 293.79353 * 1 2 3 32 32 H 1.08998 * 109.47231 * 53.79595 * 1 2 3 33 33 H 1.09000 * 109.46931 * 173.79653 * 1 2 3 34 34 H 1.08991 * 109.47051 * 240.00313 * 2 1 3 35 35 H 1.08992 * 109.47167 * 119.99750 * 2 1 3 36 36 H 1.08999 * 109.46926 * 305.64232 * 5 3 2 37 37 H 1.08997 * 109.46979 * 65.64495 * 5 3 2 38 38 H 0.97001 * 120.00258 * 0.02562 * 12 10 3 39 39 H 1.09005 * 110.62665 * 0.02562 * 15 13 12 40 40 H 1.08998 * 110.62991 * 123.02170 * 15 13 12 41 41 H 1.09001 * 110.63103 * 313.39201 * 18 16 15 42 42 H 1.09008 * 110.62665 * 190.36992 * 18 16 15 43 43 H 1.08996 * 110.62838 * 241.50783 * 19 18 16 44 44 H 1.09004 * 110.76103 * 118.55132 * 19 18 16 45 45 H 0.97001 * 120.00381 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5887 1.9874 -0.8292 5 6 1.6613 2.1174 1.3199 6 6 2.0458 3.5973 1.2648 7 9 1.2865 4.2400 0.2812 8 9 1.7972 4.1902 2.5074 9 9 3.4050 3.7148 0.9555 10 6 3.5392 1.4454 -0.1536 11 8 4.2490 1.3260 0.8226 12 7 4.0911 1.5805 -1.3757 13 6 5.5485 1.5893 -1.5243 14 1 6.0113 0.9217 -0.7977 15 6 6.1034 3.0273 -1.3750 16 6 6.7688 3.3007 -2.7618 17 1 6.9162 4.3481 -3.0252 18 6 8.0525 2.4172 -2.7743 19 6 7.4980 0.9786 -2.9194 20 6 5.9548 1.1889 -2.9746 21 1 5.3841 0.3708 -3.4139 22 7 5.8698 2.5157 -3.6743 23 6 5.1844 2.8932 -4.7981 24 1 4.5797 2.1729 -5.3292 25 6 5.2676 4.2012 -5.2553 26 7 6.0050 5.0787 -4.6083 27 14 4.3332 4.7159 -6.7886 28 1 3.5838 3.5518 -7.3257 29 1 3.3802 5.8022 -6.4462 30 1 5.2921 5.2030 -7.8125 31 1 -0.3633 0.4146 0.9403 32 1 -0.3633 0.6070 -0.8292 33 1 -0.3633 -1.0217 -0.1111 34 1 1.8934 -0.5137 -0.8899 35 1 1.8934 -0.5138 0.8899 36 1 0.5868 2.0268 1.4791 37 1 2.1921 1.6344 2.1403 38 1 3.5234 1.6763 -2.1564 39 1 5.2943 3.7339 -1.1900 40 1 6.8436 3.0723 -0.5762 41 1 8.6018 2.5245 -1.8390 42 1 8.6858 2.6721 -3.6242 43 1 7.7723 0.3725 -2.0560 44 1 7.8559 0.5175 -3.8400 45 1 6.0635 5.9927 -4.9279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111285556.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:03 Heat of formation + Delta-G solvation = -180.237588 kcal Electronic energy + Delta-G solvation = -31397.327780 eV Core-core repulsion = 26806.627528 eV Total energy + Delta-G solvation = -4590.700252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.11410 -48.62697 -48.59486 -41.36955 -40.11354 -36.67478 -35.25064 -34.37881 -31.86405 -30.96569 -30.47950 -29.57621 -27.56989 -26.09538 -24.26557 -23.45067 -22.09870 -21.51571 -20.94265 -20.24089 -19.57970 -19.34257 -18.84188 -18.54898 -18.16817 -17.18507 -16.75441 -16.04504 -15.83370 -15.62017 -15.47404 -15.31039 -15.19833 -15.02287 -14.96588 -14.75611 -14.65653 -14.62869 -14.17911 -13.79432 -13.69617 -13.55405 -12.97801 -12.89957 -12.87675 -12.81088 -12.76431 -12.66683 -12.63084 -12.08029 -11.93720 -11.90267 -11.86518 -11.70742 -11.63960 -11.16677 -10.94699 -10.90586 -10.54158 -9.88719 -8.86092 -7.74828 -5.14702 1.48794 1.49361 1.58495 1.68990 1.80185 2.29610 2.50854 2.82995 2.94604 3.09167 3.38794 3.45810 3.63721 3.75929 3.96941 4.03149 4.11843 4.19965 4.28475 4.31902 4.46852 4.49859 4.50109 4.55562 4.63637 4.71837 4.73541 4.84502 4.91098 4.92878 5.10266 5.17546 5.19193 5.20679 5.23723 5.39514 5.46977 5.53600 5.62152 5.74833 5.90899 6.27783 6.68177 7.06491 7.33456 7.73895 8.59801 9.32792 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.004374 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.988760 B = 6399.510393 C = 6939.920251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.100 4.100 3 C -0.108 4.108 4 H 0.106 0.894 5 C -0.142 4.142 6 C 0.437 3.563 7 F -0.190 7.190 8 F -0.189 7.189 9 F -0.194 7.194 10 C 0.510 3.490 11 O -0.575 6.575 12 N -0.704 5.704 13 C 0.143 3.857 14 H 0.085 0.915 15 C -0.131 4.131 16 C 0.139 3.861 17 H 0.112 0.888 18 C -0.132 4.132 19 C -0.119 4.119 20 C 0.129 3.871 21 H 0.106 0.894 22 N -0.608 5.608 23 C -0.210 4.210 24 H 0.089 0.911 25 C -0.070 4.070 26 N -0.950 5.950 27 Si 0.972 3.028 28 H -0.263 1.263 29 H -0.301 1.301 30 H -0.300 1.300 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.123 0.877 38 H 0.404 0.596 39 H 0.029 0.971 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.700 -11.300 10.926 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.138 4.138 3 C -0.129 4.129 4 H 0.124 0.876 5 C -0.180 4.180 6 C 0.383 3.617 7 F -0.172 7.172 8 F -0.170 7.170 9 F -0.175 7.175 10 C 0.297 3.703 11 O -0.455 6.455 12 N -0.353 5.353 13 C 0.036 3.964 14 H 0.103 0.897 15 C -0.171 4.171 16 C 0.032 3.968 17 H 0.130 0.870 18 C -0.172 4.172 19 C -0.159 4.159 20 C 0.021 3.979 21 H 0.124 0.876 22 N -0.330 5.330 23 C -0.339 4.339 24 H 0.106 0.894 25 C -0.262 4.262 26 N -0.600 5.600 27 Si 0.803 3.197 28 H -0.187 1.187 29 H -0.228 1.228 30 H -0.228 1.228 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.171 0.829 37 H 0.141 0.859 38 H 0.239 0.761 39 H 0.048 0.952 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.287 -11.174 11.361 18.967 hybrid contribution -0.126 1.481 -1.248 1.941 sum -10.413 -9.693 10.113 17.454 Atomic orbital electron populations 1.21862 0.92935 1.03224 1.02959 1.21387 0.97882 0.90794 1.03775 1.21458 0.91315 1.01585 0.98588 0.87605 1.22949 1.07875 0.86037 1.01096 1.21218 0.74377 0.92974 0.73115 1.93175 1.75895 1.84828 1.63310 1.93158 1.93979 1.86733 1.43136 1.93241 1.34611 1.96836 1.92840 1.20937 0.91323 0.75221 0.82797 1.90643 1.64441 1.51590 1.38802 1.45999 1.07944 1.72355 1.08973 1.22375 0.79876 0.96071 0.98103 0.89701 1.23330 0.99057 0.96415 0.98337 1.23635 0.88376 0.98135 0.86619 0.87024 1.22958 0.97973 0.96530 0.99707 1.22839 0.95535 0.96146 1.01370 1.23357 0.95734 0.89039 0.89732 0.87568 1.46693 1.53193 1.05962 1.27119 1.19411 1.20054 0.94287 1.00154 0.89373 1.25438 1.02121 0.96467 1.02166 1.69742 1.45083 1.03354 1.41790 0.85074 0.77475 0.77887 0.79301 1.18668 1.22842 1.22768 0.91181 0.92026 0.90999 0.90665 0.90570 0.82859 0.85895 0.76092 0.95192 0.92251 0.91381 0.94359 0.90053 0.92072 0.94666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.55 71.98 0.69 -0.86 16 2 C -0.10 -1.49 5.37 30.60 0.16 -1.33 16 3 C -0.11 -2.24 2.14 -11.54 -0.02 -2.26 16 4 H 0.11 2.12 7.76 -2.39 -0.02 2.10 16 5 C -0.14 -2.68 4.52 30.60 0.14 -2.54 16 6 C 0.44 11.71 3.16 71.98 0.23 11.94 16 7 F -0.19 -5.32 16.89 44.97 0.76 -4.56 16 8 F -0.19 -4.96 17.32 44.97 0.78 -4.18 16 9 F -0.19 -6.90 14.15 44.97 0.64 -6.27 16 10 C 0.51 15.37 5.00 87.66 0.44 15.81 16 11 O -0.57 -20.77 14.79 -3.04 -0.04 -20.81 16 12 N -0.70 -22.83 5.08 -434.92 -2.21 -25.04 16 13 C 0.14 5.11 2.75 46.61 0.13 5.24 16 14 H 0.09 2.97 7.30 -2.39 -0.02 2.95 16 15 C -0.13 -5.53 6.25 32.35 0.20 -5.33 16 16 C 0.14 6.51 4.73 46.36 0.22 6.73 16 17 H 0.11 6.23 5.52 -2.39 -0.01 6.22 16 18 C -0.13 -5.19 6.44 32.21 0.21 -4.98 16 19 C -0.12 -4.02 6.44 32.21 0.21 -3.81 16 20 C 0.13 4.68 5.05 46.23 0.23 4.92 16 21 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 22 N -0.61 -28.45 2.99 -614.54 -1.84 -30.29 16 23 C -0.21 -10.84 10.59 84.03 0.89 -9.96 16 24 H 0.09 4.27 7.83 -2.91 -0.02 4.25 16 25 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 26 N -0.95 -55.57 10.47 21.65 0.23 -55.34 16 27 Si 0.97 44.56 29.55 68.60 2.03 46.58 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 30 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 31 H 0.07 0.54 6.78 -2.39 -0.02 0.52 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.15 1.70 6.50 -2.39 -0.02 1.68 16 37 H 0.12 2.35 7.65 -2.39 -0.02 2.33 16 38 H 0.40 12.70 8.62 -92.71 -0.80 11.90 16 39 H 0.03 1.42 7.98 -2.38 -0.02 1.40 16 40 H 0.06 2.37 7.82 -2.39 -0.02 2.35 16 41 H 0.07 2.36 7.82 -2.39 -0.02 2.34 16 42 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.08 2.29 7.82 -2.39 -0.02 2.27 16 44 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -67.38 364.73 4.74 -62.64 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.22 Total: 27.03 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.19 Total: 10.24 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.82 Total: -110.68 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.04 Total: -20.81 kcal Atomic # 9 Polarization: -17.18 SS G_CDS: 2.17 Total: -15.01 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -67.38 4.74 -62.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111285556.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.595 kcal (2) G-P(sol) polarization free energy of solvation -67.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds