Wall clock time and date at job start Tue Mar 31 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46681 * 2 1 4 4 H 1.08997 * 109.47610 * 55.00509 * 3 2 1 5 5 C 1.52999 * 109.47647 * 294.99745 * 3 2 1 6 6 C 1.53008 * 109.46824 * 174.99846 * 3 2 1 7 7 N 1.46498 * 109.46918 * 184.99829 * 6 3 2 8 8 C 1.46497 * 120.00407 * 269.99950 * 7 6 3 9 9 C 1.34784 * 120.00067 * 90.00410 * 7 6 3 10 10 O 1.21361 * 119.99454 * 356.49572 * 9 7 6 11 11 C 1.49312 * 120.00230 * 176.49542 * 9 7 6 12 12 O 1.21391 * 120.00049 * 5.96571 * 11 9 7 13 13 N 1.34778 * 120.00060 * 185.96188 * 11 9 7 14 14 C 1.39744 * 120.00013 * 175.32917 * 13 11 9 15 15 C 1.38986 * 120.00606 * 214.84350 * 14 13 11 16 16 C 1.37978 * 119.99187 * 179.76830 * 15 14 13 17 17 C 1.38935 * 120.00231 * 0.51364 * 16 15 14 18 18 O 1.35760 * 119.99108 * 179.71811 * 17 16 15 19 19 C 1.34804 * 116.99999 * 185.59344 * 18 17 16 20 20 H 1.07999 * 120.00173 * 5.32996 * 19 18 17 21 21 C 1.38652 * 119.99698 * 185.33563 * 19 18 17 22 22 N 1.31555 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99685 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47390 * 89.99607 * 23 21 19 25 25 H 1.48501 * 109.47066 * 209.99702 * 23 21 19 26 26 H 1.48502 * 109.47503 * 329.99758 * 23 21 19 27 27 C 1.38934 * 120.01463 * 359.74310 * 17 16 15 28 28 C 1.37958 * 120.00871 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.46678 * 60.00290 * 1 2 3 30 30 H 1.08999 * 109.46637 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46987 * 299.99750 * 1 2 3 32 32 H 1.08998 * 109.46987 * 240.00250 * 2 1 3 33 33 H 1.08997 * 109.46942 * 120.00155 * 2 1 3 34 34 H 1.08997 * 109.46787 * 300.00708 * 5 3 2 35 35 H 1.08999 * 109.47680 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.46804 * 59.99883 * 5 3 2 37 37 H 1.08995 * 109.47355 * 305.00076 * 6 3 2 38 38 H 1.09000 * 109.46760 * 65.00466 * 6 3 2 39 39 H 1.09000 * 109.47271 * 95.99680 * 8 7 6 40 40 H 1.08999 * 109.47610 * 215.99906 * 8 7 6 41 41 H 1.09003 * 109.47206 * 336.00260 * 8 7 6 42 42 H 0.96998 * 119.99690 * 355.33666 * 13 11 9 43 43 H 1.08002 * 120.00942 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.99959 * 180.22986 * 16 15 14 45 45 H 0.97004 * 119.99858 * 180.02562 * 22 21 19 46 46 H 1.08010 * 119.99542 * 179.97438 * 27 17 16 47 47 H 1.08004 * 120.00355 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4443 0.1258 7 7 4.0432 2.8238 0.2458 8 6 4.3864 3.5874 -0.9564 9 6 4.1676 3.3905 1.4624 10 8 3.8235 2.7809 2.4537 11 6 4.7288 4.7682 1.5904 12 8 4.9718 5.4195 0.5952 13 7 4.9655 5.2888 2.8109 14 6 5.5807 6.5378 2.9304 15 6 6.4523 6.7853 3.9844 16 6 7.0632 8.0170 4.0995 17 6 6.7989 9.0134 3.1679 18 8 7.3958 10.2271 3.2847 19 6 7.0096 11.1849 2.4182 20 1 6.1974 10.9964 1.7317 21 6 7.6551 12.4119 2.4083 22 7 8.6441 12.6417 3.2448 23 14 7.1204 13.7388 1.2072 24 1 6.0669 14.5777 1.8329 25 1 8.2868 14.5886 0.8570 26 1 6.5825 13.1051 -0.0234 27 6 5.9235 8.7680 2.1173 28 6 5.3169 7.5347 1.9984 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0699 1.5875 -2.1491 35 1 1.9981 3.1544 -1.3071 36 1 0.5490 2.1252 -1.3969 37 1 3.8571 0.8801 1.0113 38 1 4.0030 0.9837 -0.7596 39 1 3.5352 4.2001 -1.2530 40 1 5.2413 4.2303 -0.7468 41 1 4.6381 2.8999 -1.7640 42 1 4.7089 4.7964 3.6062 43 1 6.6546 6.0122 4.7109 44 1 7.7434 8.2082 4.9163 45 1 9.0954 13.5003 3.2381 46 1 5.7179 9.5429 1.3936 47 1 4.6361 7.3442 1.1819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116045847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:28 Heat of formation + Delta-G solvation = -62.990659 kcal Electronic energy + Delta-G solvation = -28162.863283 eV Core-core repulsion = 24119.103980 eV Total energy + Delta-G solvation = -4043.759303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.07734 -39.48464 -38.52350 -37.38668 -36.68727 -35.16795 -33.88271 -32.23119 -30.39208 -30.24747 -28.45818 -28.17699 -26.60952 -25.42255 -24.65438 -23.14847 -22.25585 -21.05852 -20.44203 -19.73830 -18.28657 -17.83279 -17.26277 -16.97809 -16.42923 -16.15589 -15.79621 -15.22665 -15.04864 -14.55000 -14.40395 -14.36926 -13.78734 -13.68769 -13.60404 -13.53205 -13.29031 -13.15945 -13.02863 -12.64616 -12.60938 -12.27259 -12.15217 -11.83499 -11.69707 -11.61459 -11.53914 -11.35132 -11.27702 -11.03854 -10.99760 -10.90123 -10.80550 -10.46820 -9.74040 -9.51679 -9.21462 -8.94270 -8.73751 -8.26685 -7.01865 -6.49061 -4.06275 1.26416 2.11713 2.16067 2.34898 3.10424 3.12818 3.17547 3.19889 3.44435 3.94317 4.28776 4.43307 4.47243 4.52828 4.56508 4.85211 4.99390 5.06788 5.09711 5.15748 5.19527 5.19788 5.32006 5.39314 5.46785 5.59302 5.61980 5.64852 5.65707 5.68853 5.71816 5.79042 5.95633 6.03158 6.08896 6.10481 6.19447 6.24007 6.63926 6.72328 6.84319 6.93209 7.00323 7.22972 7.37384 7.37714 7.67957 7.71186 7.95682 8.09583 8.96499 9.65061 10.68553 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.002079 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.008173 B =13461.920987 C =14235.201528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.109 4.109 4 H 0.076 0.924 5 C -0.153 4.153 6 C 0.117 3.883 7 N -0.585 5.585 8 C 0.062 3.938 9 C 0.509 3.491 10 O -0.524 6.524 11 C 0.496 3.504 12 O -0.504 6.504 13 N -0.624 5.624 14 C 0.022 3.978 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.149 3.851 18 O -0.173 6.173 19 C -0.391 4.391 20 H 0.093 0.907 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.941 3.059 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.267 1.267 27 C -0.221 4.221 28 C -0.060 4.060 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.110 0.890 41 H 0.065 0.935 42 H 0.413 0.587 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.271 0.729 46 H 0.132 0.868 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.931 -22.242 -7.569 26.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.129 4.129 4 H 0.094 0.906 5 C -0.210 4.210 6 C -0.005 4.005 7 N -0.318 5.318 8 C -0.079 4.079 9 C 0.292 3.708 10 O -0.400 6.400 11 C 0.278 3.722 12 O -0.380 6.380 13 N -0.269 5.269 14 C -0.070 4.070 15 C -0.105 4.105 16 C -0.198 4.198 17 C 0.095 3.905 18 O -0.076 6.076 19 C -0.467 4.467 20 H 0.111 0.889 21 C -0.165 4.165 22 N -0.494 5.494 23 Si 0.766 3.234 24 H -0.198 1.198 25 H -0.202 1.202 26 H -0.191 1.191 27 C -0.241 4.241 28 C -0.080 4.080 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.128 0.872 41 H 0.084 0.916 42 H 0.250 0.750 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.081 0.919 46 H 0.149 0.851 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.585 -21.835 -7.563 25.849 hybrid contribution -0.438 0.376 -0.351 0.676 sum -12.023 -21.460 -7.914 25.840 Atomic orbital electron populations 1.21803 0.95635 1.01543 1.02039 1.21492 0.96232 0.95620 1.02085 1.21569 0.95138 0.96888 0.99275 0.90583 1.21993 1.01513 1.00930 0.96521 1.21731 0.94047 0.81522 1.03222 1.47670 1.63354 1.14357 1.06394 1.22532 1.03604 0.96337 0.85470 1.20165 0.79647 0.87282 0.83735 1.90745 1.48812 1.63832 1.36630 1.20018 0.80575 0.87249 0.84366 1.90675 1.50709 1.60784 1.35866 1.42869 1.57311 1.18647 1.08048 1.17240 1.03240 0.84789 1.01741 1.20391 0.95719 0.96742 0.97645 1.19999 1.05865 0.92458 1.01454 1.19457 0.91593 0.86763 0.92701 1.83982 1.56110 1.15449 1.52064 1.21346 1.17569 0.91355 1.16421 0.88949 1.25307 0.95550 0.97782 0.97877 1.70037 1.20643 1.24067 1.34687 0.85701 0.78319 0.79759 0.79623 1.19833 1.20232 1.19112 1.21095 1.03576 0.98012 1.01451 1.20839 0.98293 0.91101 0.97736 0.92481 0.92792 0.92698 0.91880 0.91733 0.92685 0.92167 0.92431 0.89612 0.89988 0.91947 0.87231 0.91636 0.75035 0.86467 0.85860 0.91937 0.85052 0.85623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.12 -0.72 5.40 -26.73 -0.14 -0.87 16 3 C -0.11 -0.84 2.59 -90.62 -0.24 -1.07 16 4 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.15 -1.06 8.52 37.16 0.32 -0.74 16 6 C 0.12 0.95 4.89 -4.04 -0.02 0.93 16 7 N -0.58 -6.04 2.70 -182.14 -0.49 -6.53 16 8 C 0.06 0.58 8.42 59.85 0.50 1.08 16 9 C 0.51 6.58 7.73 -11.65 -0.09 6.49 16 10 O -0.52 -7.50 16.10 5.49 0.09 -7.41 16 11 C 0.50 7.23 7.61 -11.65 -0.09 7.14 16 12 O -0.50 -8.11 10.57 5.46 0.06 -8.05 16 13 N -0.62 -9.14 5.32 -10.27 -0.05 -9.19 16 14 C 0.02 0.39 6.30 -83.69 -0.53 -0.14 16 15 C -0.08 -1.47 9.96 -39.40 -0.39 -1.86 16 16 C -0.18 -3.63 9.98 -39.42 -0.39 -4.02 16 17 C 0.15 3.55 6.65 -39.07 -0.26 3.29 16 18 O -0.17 -4.85 9.75 0.09 0.00 -4.85 16 19 C -0.39 -10.77 9.44 30.89 0.29 -10.48 16 20 H 0.09 2.36 5.28 -52.49 -0.28 2.08 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 22 N -0.86 -24.87 13.67 55.48 0.76 -24.11 16 23 Si 0.94 20.31 29.55 -169.99 -5.02 15.29 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 C -0.22 -4.84 9.13 -39.43 -0.36 -5.20 16 28 C -0.06 -1.16 8.69 -39.40 -0.34 -1.50 16 29 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.48 5.56 -51.93 -0.29 0.19 16 36 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 37 H 0.09 0.77 7.47 -51.93 -0.39 0.38 16 38 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 39 H 0.06 0.58 6.70 -51.93 -0.35 0.23 16 40 H 0.11 1.26 5.36 -51.93 -0.28 0.98 16 41 H 0.06 0.44 7.83 -51.93 -0.41 0.04 16 42 H 0.41 5.17 8.30 -40.82 -0.34 4.83 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 45 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.13 2.88 5.70 -52.48 -0.30 2.59 16 47 H 0.13 2.35 6.22 -52.48 -0.33 2.02 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -31.24 382.13 -6.94 -38.19 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.56 Total: 7.45 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.48 Total: -6.54 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.21 Total: -39.84 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.15 Total: -20.31 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.24 -6.94 -38.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116045847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.805 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds