Wall clock time and date at job start Tue Mar 31 2020 17:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.46681 * 2 1 4 4 H 1.08997 * 109.47610 * 55.00509 * 3 2 1 5 5 C 1.52999 * 109.47647 * 294.99745 * 3 2 1 6 6 C 1.53008 * 109.46824 * 174.99846 * 3 2 1 7 7 N 1.46498 * 109.46918 * 184.99829 * 6 3 2 8 8 C 1.46497 * 120.00407 * 269.99950 * 7 6 3 9 9 C 1.34784 * 120.00067 * 90.00410 * 7 6 3 10 10 O 1.21361 * 119.99454 * 356.49572 * 9 7 6 11 11 C 1.49312 * 120.00230 * 176.49542 * 9 7 6 12 12 O 1.21391 * 120.00049 * 5.96571 * 11 9 7 13 13 N 1.34778 * 120.00060 * 185.96188 * 11 9 7 14 14 C 1.39744 * 120.00013 * 175.32917 * 13 11 9 15 15 C 1.38986 * 120.00606 * 214.84350 * 14 13 11 16 16 C 1.37978 * 119.99187 * 179.76830 * 15 14 13 17 17 C 1.38935 * 120.00231 * 0.51364 * 16 15 14 18 18 O 1.35760 * 119.99108 * 179.71811 * 17 16 15 19 19 C 1.34804 * 116.99999 * 185.59344 * 18 17 16 20 20 H 1.07999 * 120.00173 * 5.32996 * 19 18 17 21 21 C 1.38652 * 119.99698 * 185.33563 * 19 18 17 22 22 N 1.31555 * 120.00175 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99685 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47390 * 89.99607 * 23 21 19 25 25 H 1.48501 * 109.47066 * 209.99702 * 23 21 19 26 26 H 1.48502 * 109.47503 * 329.99758 * 23 21 19 27 27 C 1.38934 * 120.01463 * 359.74310 * 17 16 15 28 28 C 1.37958 * 120.00871 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.46678 * 60.00290 * 1 2 3 30 30 H 1.08999 * 109.46637 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46987 * 299.99750 * 1 2 3 32 32 H 1.08998 * 109.46987 * 240.00250 * 2 1 3 33 33 H 1.08997 * 109.46942 * 120.00155 * 2 1 3 34 34 H 1.08997 * 109.46787 * 300.00708 * 5 3 2 35 35 H 1.08999 * 109.47680 * 179.97438 * 5 3 2 36 36 H 1.08999 * 109.46804 * 59.99883 * 5 3 2 37 37 H 1.08995 * 109.47355 * 305.00076 * 6 3 2 38 38 H 1.09000 * 109.46760 * 65.00466 * 6 3 2 39 39 H 1.09000 * 109.47271 * 95.99680 * 8 7 6 40 40 H 1.08999 * 109.47610 * 215.99906 * 8 7 6 41 41 H 1.09003 * 109.47206 * 336.00260 * 8 7 6 42 42 H 0.96998 * 119.99690 * 355.33666 * 13 11 9 43 43 H 1.08002 * 120.00942 * 0.02562 * 15 14 13 44 44 H 1.08000 * 119.99959 * 180.22986 * 16 15 14 45 45 H 0.97004 * 119.99858 * 180.02562 * 22 21 19 46 46 H 1.08010 * 119.99542 * 179.97438 * 27 17 16 47 47 H 1.08004 * 120.00355 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4443 0.1258 7 7 4.0432 2.8238 0.2458 8 6 4.3864 3.5874 -0.9564 9 6 4.1676 3.3905 1.4624 10 8 3.8235 2.7809 2.4537 11 6 4.7288 4.7682 1.5904 12 8 4.9718 5.4195 0.5952 13 7 4.9655 5.2888 2.8109 14 6 5.5807 6.5378 2.9304 15 6 6.4523 6.7853 3.9844 16 6 7.0632 8.0170 4.0995 17 6 6.7989 9.0134 3.1679 18 8 7.3958 10.2271 3.2847 19 6 7.0096 11.1849 2.4182 20 1 6.1974 10.9964 1.7317 21 6 7.6551 12.4119 2.4083 22 7 8.6441 12.6417 3.2448 23 14 7.1204 13.7388 1.2072 24 1 6.0669 14.5777 1.8329 25 1 8.2868 14.5886 0.8570 26 1 6.5825 13.1051 -0.0234 27 6 5.9235 8.7680 2.1173 28 6 5.3169 7.5347 1.9984 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0699 1.5875 -2.1491 35 1 1.9981 3.1544 -1.3071 36 1 0.5490 2.1252 -1.3969 37 1 3.8571 0.8801 1.0113 38 1 4.0030 0.9837 -0.7596 39 1 3.5352 4.2001 -1.2530 40 1 5.2413 4.2303 -0.7468 41 1 4.6381 2.8999 -1.7640 42 1 4.7089 4.7964 3.6062 43 1 6.6546 6.0122 4.7109 44 1 7.7434 8.2082 4.9163 45 1 9.0954 13.5003 3.2381 46 1 5.7179 9.5429 1.3936 47 1 4.6361 7.3442 1.1819 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116045847.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:27 Heat of formation + Delta-G solvation = -82.319476 kcal Electronic energy + Delta-G solvation = -28163.701443 eV Core-core repulsion = 24119.103980 eV Total energy + Delta-G solvation = -4044.597463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22355 -40.89507 -39.94581 -38.29000 -38.14886 -36.11275 -35.18058 -34.16969 -31.91092 -30.95769 -29.92840 -28.89040 -27.71238 -27.16265 -25.52357 -24.25904 -23.74487 -22.44641 -21.24169 -20.77297 -19.93576 -19.24477 -18.64294 -18.35759 -17.51917 -17.30974 -16.74278 -16.31899 -16.19829 -16.06762 -15.66394 -15.51644 -15.40622 -15.09368 -14.81167 -14.68301 -14.24909 -14.17038 -14.04632 -13.75827 -13.63657 -13.57372 -13.26225 -13.12298 -12.80540 -12.72225 -12.66959 -12.49899 -12.40282 -12.21145 -12.12772 -11.94141 -11.57147 -11.43393 -11.38237 -11.16658 -10.64176 -10.40400 -9.87583 -9.78843 -8.68820 -8.47431 -6.13930 0.06408 0.51371 0.70242 1.22511 1.36327 1.44864 1.53300 2.03639 2.17950 2.40837 2.79414 3.12974 3.21611 3.48486 3.82473 3.88877 3.99658 4.06726 4.09027 4.27095 4.39071 4.45959 4.50922 4.53142 4.61238 4.63670 4.65193 4.74751 4.79620 4.83572 4.99801 5.04982 5.07835 5.11526 5.12068 5.17001 5.22851 5.27974 5.32110 5.39343 5.48464 5.51184 5.55264 5.67109 5.87333 6.01001 6.06530 6.20743 6.63969 6.88370 6.97470 7.75690 8.75180 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023250 B = 0.002079 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.008173 B =13461.920987 C =14235.201528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.105 4.105 4 H 0.049 0.951 5 C -0.150 4.150 6 C 0.114 3.886 7 N -0.575 5.575 8 C 0.062 3.938 9 C 0.510 3.490 10 O -0.540 6.540 11 C 0.497 3.503 12 O -0.517 6.517 13 N -0.621 5.621 14 C 0.050 3.950 15 C -0.072 4.072 16 C -0.180 4.180 17 C 0.112 3.888 18 O -0.224 6.224 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.021 4.021 22 N -0.916 5.916 23 Si 1.016 2.984 24 H -0.263 1.263 25 H -0.271 1.271 26 H -0.255 1.255 27 C -0.226 4.226 28 C -0.067 4.067 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.427 0.573 43 H 0.163 0.837 44 H 0.130 0.870 45 H 0.273 0.727 46 H 0.122 0.878 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.393 -25.187 -9.146 29.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.124 4.124 4 H 0.067 0.933 5 C -0.207 4.207 6 C -0.008 4.008 7 N -0.306 5.306 8 C -0.079 4.079 9 C 0.292 3.708 10 O -0.419 6.419 11 C 0.280 3.720 12 O -0.394 6.394 13 N -0.268 5.268 14 C -0.043 4.043 15 C -0.092 4.092 16 C -0.199 4.199 17 C 0.061 3.939 18 O -0.131 6.131 19 C -0.489 4.489 20 H 0.118 0.882 21 C -0.219 4.219 22 N -0.554 5.554 23 Si 0.836 3.164 24 H -0.188 1.188 25 H -0.195 1.195 26 H -0.178 1.178 27 C -0.246 4.246 28 C -0.087 4.087 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.266 0.734 43 H 0.180 0.820 44 H 0.148 0.852 45 H 0.082 0.918 46 H 0.140 0.860 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.090 -24.867 -9.160 29.557 hybrid contribution -0.135 0.860 0.114 0.878 sum -13.225 -24.007 -9.047 28.863 Atomic orbital electron populations 1.21808 0.95613 1.01997 1.01661 1.21473 0.96221 0.94597 1.02773 1.21501 0.94592 0.97652 0.98673 0.93263 1.21973 1.01744 1.00365 0.96611 1.21965 0.94486 0.80007 1.04300 1.47794 1.61901 1.15143 1.05780 1.22556 1.02718 0.96906 0.85735 1.19802 0.80038 0.86378 0.84547 1.90747 1.49949 1.63863 1.37297 1.20437 0.79737 0.87964 0.83865 1.90697 1.50885 1.61436 1.36383 1.42824 1.57316 1.17618 1.09048 1.17362 1.01369 0.85320 1.00255 1.20770 0.94003 0.96364 0.98040 1.20295 1.05984 0.92802 1.00855 1.19975 0.92732 0.86705 0.94481 1.83947 1.58412 1.17041 1.53665 1.21783 1.18249 0.92143 1.16700 0.88240 1.26546 0.95482 1.00032 0.99797 1.70172 1.22808 1.25032 1.37406 0.84615 0.78172 0.76359 0.77273 1.18780 1.19538 1.17838 1.21106 1.03661 0.98871 1.00990 1.20933 0.98413 0.90628 0.98698 0.92156 0.91939 0.93816 0.90218 0.91991 0.90959 0.93269 0.92322 0.90312 0.87006 0.91826 0.89333 0.88397 0.73380 0.81968 0.85206 0.91776 0.86028 0.84819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 71.99 0.70 -0.87 16 2 C -0.11 -1.12 5.40 30.60 0.17 -0.95 16 3 C -0.10 -1.37 2.59 -10.79 -0.03 -1.39 16 4 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 5 C -0.15 -1.68 8.52 71.98 0.61 -1.07 16 6 C 0.11 1.52 4.89 86.38 0.42 1.94 16 7 N -0.57 -10.45 2.70 -848.51 -2.29 -12.74 16 8 C 0.06 0.99 8.42 127.77 1.08 2.07 16 9 C 0.51 12.17 7.73 87.23 0.67 12.84 16 10 O -0.54 -14.45 16.10 -3.28 -0.05 -14.51 16 11 C 0.50 13.50 7.61 87.23 0.66 14.16 16 12 O -0.52 -15.83 10.57 -3.37 -0.04 -15.86 16 13 N -0.62 -16.62 5.32 -304.75 -1.62 -18.24 16 14 C 0.05 1.66 6.30 38.24 0.24 1.90 16 15 C -0.07 -2.32 9.96 22.39 0.22 -2.10 16 16 C -0.18 -7.29 9.98 22.38 0.22 -7.07 16 17 C 0.11 5.51 6.65 22.60 0.15 5.66 16 18 O -0.22 -13.31 9.75 -22.58 -0.22 -13.53 16 19 C -0.41 -23.89 9.44 67.92 0.64 -23.25 16 20 H 0.10 5.33 5.28 -2.91 -0.02 5.32 16 21 C -0.02 -1.16 5.49 84.83 0.47 -0.70 16 22 N -0.92 -55.66 13.67 21.61 0.30 -55.37 16 23 Si 1.02 42.77 29.55 68.60 2.03 44.80 16 24 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 27 C -0.23 -10.14 9.13 22.37 0.20 -9.94 16 28 C -0.07 -2.55 8.69 22.39 0.19 -2.35 16 29 H 0.06 0.57 6.56 -2.39 -0.02 0.56 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 0.66 5.56 -2.39 -0.01 0.65 16 36 H 0.06 0.65 6.56 -2.39 -0.02 0.64 16 37 H 0.08 1.22 7.47 -2.39 -0.02 1.20 16 38 H 0.11 0.87 7.85 -2.39 -0.02 0.86 16 39 H 0.06 1.03 6.70 -2.39 -0.02 1.02 16 40 H 0.09 1.86 5.36 -2.46 -0.01 1.85 16 41 H 0.10 0.94 7.83 -2.39 -0.02 0.92 16 42 H 0.43 9.38 8.30 -92.71 -0.77 8.61 16 43 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 44 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 45 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.12 5.58 5.70 -2.91 -0.02 5.56 16 47 H 0.13 4.88 6.22 -2.91 -0.02 4.86 16 Total: -1.00 -72.00 382.13 4.97 -67.03 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.24 Total: 29.52 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 6.63 Total: -11.11 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -3.62 Total: -86.35 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.31 Total: -43.89 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.00 4.97 -67.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116045847.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.285 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds