Wall clock time and date at job start Tue Mar 31 2020 17:52:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 H 1.08992 * 109.46951 * 305.00136 * 3 2 1 5 5 C 1.53004 * 109.46982 * 64.99818 * 3 2 1 6 6 C 1.53000 * 109.47124 * 184.99796 * 3 2 1 7 7 C 1.53001 * 109.46888 * 174.99859 * 6 3 2 8 8 N 1.46497 * 109.46835 * 179.97438 * 7 6 3 9 9 C 1.34785 * 119.99821 * 179.97438 * 8 7 6 10 10 O 1.21363 * 119.99949 * 0.02562 * 9 8 7 11 11 C 1.49316 * 119.99929 * 180.02562 * 9 8 7 12 12 O 1.21390 * 120.00242 * 0.02562 * 11 9 8 13 13 N 1.34772 * 120.00076 * 180.02562 * 11 9 8 14 14 C 1.39740 * 120.00290 * 175.50114 * 13 11 9 15 15 C 1.38994 * 120.00879 * 214.86793 * 14 13 11 16 16 C 1.37967 * 119.99399 * 179.76614 * 15 14 13 17 17 C 1.38936 * 120.00756 * 0.50852 * 16 15 14 18 18 O 1.35756 * 119.99754 * 179.71929 * 17 16 15 19 19 C 1.34802 * 117.00042 * 185.36896 * 18 17 16 20 20 H 1.07994 * 120.00007 * 354.96473 * 19 18 17 21 21 C 1.38648 * 119.99850 * 174.96567 * 19 18 17 22 22 N 1.31564 * 119.99790 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47047 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47206 * 120.00073 * 23 21 19 26 26 H 1.48503 * 109.47325 * 239.99901 * 23 21 19 27 27 C 1.38945 * 120.00993 * 359.74490 * 17 16 15 28 28 C 1.37960 * 120.00964 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47313 * 299.99710 * 1 2 3 30 30 H 1.09003 * 109.47458 * 60.00467 * 1 2 3 31 31 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47313 * 240.00289 * 2 1 3 33 33 H 1.09003 * 109.47458 * 119.99533 * 2 1 3 34 34 H 1.09001 * 109.46833 * 59.99796 * 5 3 2 35 35 H 1.09000 * 109.46980 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47249 * 300.00535 * 5 3 2 37 37 H 1.09001 * 109.47058 * 295.00108 * 6 3 2 38 38 H 1.08996 * 109.47232 * 55.00094 * 6 3 2 39 39 H 1.08997 * 109.47235 * 300.00711 * 7 6 3 40 40 H 1.09006 * 109.46948 * 60.00125 * 7 6 3 41 41 H 0.97002 * 120.00405 * 0.02562 * 8 7 6 42 42 H 0.96999 * 119.99966 * 355.50582 * 13 11 9 43 43 H 1.08006 * 120.00568 * 0.02562 * 15 14 13 44 44 H 1.07993 * 119.99888 * 180.22976 * 16 15 14 45 45 H 0.97005 * 119.99874 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.99024 * 179.97438 * 27 17 16 47 47 H 1.07998 * 120.00317 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6351 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0643 2.8851 -0.2511 8 7 5.5244 2.8870 -0.3708 9 6 6.1890 4.0531 -0.4942 10 8 5.5779 5.1015 -0.5056 11 6 7.6771 4.0549 -0.6168 12 8 8.2884 3.0062 -0.6058 13 7 8.3417 5.2209 -0.7396 14 6 9.7389 5.2301 -0.7598 15 6 10.4356 6.2842 -0.1807 16 6 11.8152 6.2906 -0.1965 17 6 12.5080 5.2486 -0.8005 18 8 13.8653 5.2579 -0.8209 19 6 14.4736 4.2773 -1.5177 20 1 13.8874 3.4850 -1.9591 21 6 15.8520 4.2858 -1.6675 22 7 16.5662 5.2508 -1.1293 23 14 16.6951 2.9266 -2.6324 24 1 15.6762 1.9679 -3.1304 25 1 17.4251 3.5162 -3.7834 26 1 17.6543 2.2149 -1.7501 27 6 11.8117 4.1973 -1.3840 28 6 10.4323 4.1880 -1.3644 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0697 1.5875 2.1492 35 1 1.9980 3.1544 1.3072 36 1 0.5488 2.1252 1.3970 37 1 4.0029 0.9837 0.7597 38 1 3.8570 0.8802 -1.0112 39 1 3.6261 3.3459 -1.1364 40 1 3.7720 3.4495 0.6345 41 1 6.0129 2.0489 -0.3621 42 1 7.8502 6.0538 -0.8140 43 1 9.8972 7.0963 0.2853 44 1 12.3566 7.1077 0.2566 45 1 17.5305 5.2570 -1.2345 46 1 12.3505 3.3877 -1.8537 47 1 9.8912 3.3710 -1.8183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118430547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:40 Heat of formation + Delta-G solvation = -87.373268 kcal Electronic energy + Delta-G solvation = -27078.377878 eV Core-core repulsion = 23033.561266 eV Total energy + Delta-G solvation = -4044.816612 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87637 -39.38580 -38.50144 -37.81080 -36.62330 -35.22112 -33.93722 -32.22608 -31.53392 -30.27622 -28.79702 -28.20813 -26.14002 -25.37994 -24.21399 -22.51101 -22.14711 -21.32430 -20.57610 -19.97061 -18.80506 -17.95780 -17.27719 -16.95688 -16.33435 -16.17158 -15.87336 -15.54977 -15.02067 -14.66792 -14.52334 -14.26905 -14.21853 -13.82031 -13.70058 -13.63230 -13.57965 -13.07545 -12.95722 -12.62249 -12.44502 -12.30235 -12.15779 -11.88306 -11.79441 -11.61224 -11.57700 -11.41604 -11.14493 -11.07532 -11.00993 -10.94910 -10.75725 -10.44452 -9.79903 -9.64169 -9.50541 -9.22631 -8.75771 -8.26910 -7.02016 -6.48707 -4.05982 1.25287 2.11952 2.17150 2.37671 3.10406 3.13286 3.18935 3.22331 3.59630 3.94655 4.17595 4.33404 4.35813 4.45699 4.54160 4.70612 4.77602 4.97435 5.02675 5.05775 5.08472 5.15952 5.21489 5.28357 5.43420 5.51220 5.54805 5.59580 5.61014 5.62375 5.67387 5.68275 5.91334 5.92822 5.97815 6.03441 6.10103 6.23480 6.61962 6.71553 6.87488 6.94806 7.02912 7.24123 7.37999 7.43399 7.67324 7.71727 7.96284 8.08373 8.96970 9.65392 10.68977 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.001716 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.659360 B =16310.698698 C =17309.258251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.088 4.088 4 H 0.074 0.926 5 C -0.155 4.155 6 C -0.130 4.130 7 C 0.115 3.885 8 N -0.703 5.703 9 C 0.511 3.489 10 O -0.523 6.523 11 C 0.495 3.505 12 O -0.510 6.510 13 N -0.623 5.623 14 C 0.022 3.978 15 C -0.085 4.085 16 C -0.177 4.177 17 C 0.150 3.850 18 O -0.174 6.174 19 C -0.391 4.391 20 H 0.094 0.906 21 C 0.040 3.960 22 N -0.860 5.860 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.222 4.222 28 C -0.060 4.060 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.414 0.586 42 H 0.414 0.586 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.270 0.730 46 H 0.132 0.868 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.081 -7.097 1.741 29.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.212 4.212 6 C -0.168 4.168 7 C -0.008 4.008 8 N -0.357 5.357 9 C 0.292 3.708 10 O -0.399 6.399 11 C 0.277 3.723 12 O -0.385 6.385 13 N -0.269 5.269 14 C -0.071 4.071 15 C -0.105 4.105 16 C -0.197 4.197 17 C 0.095 3.905 18 O -0.077 6.077 19 C -0.467 4.467 20 H 0.112 0.888 21 C -0.165 4.165 22 N -0.495 5.495 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.242 4.242 28 C -0.080 4.080 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.250 0.750 42 H 0.250 0.750 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.080 0.920 46 H 0.150 0.850 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.692 -6.880 1.877 28.596 hybrid contribution 0.374 -0.690 -0.488 0.924 sum -27.319 -7.571 1.389 28.382 Atomic orbital electron populations 1.21823 0.95778 1.01620 1.01970 1.21573 0.96027 0.95958 1.02193 1.21093 0.94008 0.96696 0.98945 0.90762 1.21984 1.01581 1.00689 0.96923 1.21892 0.96160 0.95508 1.03220 1.21576 0.78560 0.97842 1.02777 1.45773 1.08122 1.09189 1.72573 1.20169 0.88450 0.84429 0.77758 1.90758 1.69454 1.31156 1.48494 1.20018 0.87958 0.84957 0.79410 1.90774 1.68686 1.31009 1.48073 1.42839 1.05783 1.09277 1.68982 1.17246 0.80276 1.00467 1.09082 1.20393 0.93385 0.97669 0.99027 1.20000 0.92518 0.99690 1.07519 1.19448 0.85019 0.92863 0.93133 1.83965 1.12808 1.48288 1.62596 1.21411 0.90430 1.03260 1.31631 0.88849 1.25306 0.95400 0.98331 0.97456 1.70052 1.06852 1.31111 1.41452 0.85633 0.79356 0.79487 0.78892 1.19015 1.20101 1.20110 1.21093 0.93559 1.01336 1.08176 1.20838 0.93596 0.97174 0.96377 0.92437 0.92742 0.92828 0.91881 0.91853 0.92518 0.92287 0.92296 0.90834 0.90867 0.90967 0.90674 0.74985 0.74979 0.86410 0.85831 0.91996 0.85028 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.68 9.67 37.15 0.36 -0.32 16 2 C -0.12 -0.55 5.40 -26.73 -0.14 -0.70 16 3 C -0.09 -0.43 2.39 -90.61 -0.22 -0.64 16 4 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 5 C -0.15 -0.77 8.70 37.16 0.32 -0.44 16 6 C -0.13 -0.69 4.80 -26.73 -0.13 -0.82 16 7 C 0.12 0.86 5.43 -4.04 -0.02 0.84 16 8 N -0.70 -6.71 5.55 -60.77 -0.34 -7.05 16 9 C 0.51 6.41 7.88 -11.64 -0.09 6.32 16 10 O -0.52 -7.39 16.48 5.49 0.09 -7.30 16 11 C 0.50 7.27 7.73 -11.65 -0.09 7.18 16 12 O -0.51 -8.59 13.91 5.46 0.08 -8.51 16 13 N -0.62 -9.19 5.32 -10.27 -0.05 -9.24 16 14 C 0.02 0.38 6.30 -83.69 -0.53 -0.14 16 15 C -0.08 -1.48 9.96 -39.40 -0.39 -1.87 16 16 C -0.18 -3.64 9.98 -39.42 -0.39 -4.03 16 17 C 0.15 3.58 6.65 -39.06 -0.26 3.32 16 18 O -0.17 -4.89 9.75 0.11 0.00 -4.89 16 19 C -0.39 -10.84 9.48 30.88 0.29 -10.54 16 20 H 0.09 2.41 5.19 -52.49 -0.27 2.13 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -24.93 13.67 55.48 0.76 -24.18 16 23 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 24 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 C -0.22 -4.90 9.16 -39.42 -0.36 -5.26 16 28 C -0.06 -1.18 8.69 -39.40 -0.34 -1.53 16 29 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.32 6.57 -51.93 -0.34 -0.03 16 36 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.59 6.57 -51.93 -0.34 0.25 16 41 H 0.41 3.55 7.94 -40.82 -0.32 3.23 16 42 H 0.41 5.14 8.30 -40.82 -0.34 4.80 16 43 H 0.12 1.65 8.06 -52.48 -0.42 1.23 16 44 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 45 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.13 2.91 5.63 -52.49 -0.30 2.62 16 47 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -32.07 390.52 -7.40 -39.47 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.71 Total: 8.10 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -2.09 Total: -7.66 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.37 Total: -40.47 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: 0.17 Total: -20.70 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.07 -7.40 -39.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118430547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.902 kcal (2) G-P(sol) polarization free energy of solvation -32.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds