Wall clock time and date at job start Tue Mar 31 2020 17:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46987 * 2 1 4 4 H 1.08992 * 109.46951 * 305.00136 * 3 2 1 5 5 C 1.53004 * 109.46982 * 64.99818 * 3 2 1 6 6 C 1.53000 * 109.47124 * 184.99796 * 3 2 1 7 7 C 1.53001 * 109.46888 * 174.99859 * 6 3 2 8 8 N 1.46497 * 109.46835 * 179.97438 * 7 6 3 9 9 C 1.34785 * 119.99821 * 179.97438 * 8 7 6 10 10 O 1.21363 * 119.99949 * 0.02562 * 9 8 7 11 11 C 1.49316 * 119.99929 * 180.02562 * 9 8 7 12 12 O 1.21390 * 120.00242 * 0.02562 * 11 9 8 13 13 N 1.34772 * 120.00076 * 180.02562 * 11 9 8 14 14 C 1.39740 * 120.00290 * 175.50114 * 13 11 9 15 15 C 1.38994 * 120.00879 * 214.86793 * 14 13 11 16 16 C 1.37967 * 119.99399 * 179.76614 * 15 14 13 17 17 C 1.38936 * 120.00756 * 0.50852 * 16 15 14 18 18 O 1.35756 * 119.99754 * 179.71929 * 17 16 15 19 19 C 1.34802 * 117.00042 * 185.36896 * 18 17 16 20 20 H 1.07994 * 120.00007 * 354.96473 * 19 18 17 21 21 C 1.38648 * 119.99850 * 174.96567 * 19 18 17 22 22 N 1.31564 * 119.99790 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47047 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47206 * 120.00073 * 23 21 19 26 26 H 1.48503 * 109.47325 * 239.99901 * 23 21 19 27 27 C 1.38945 * 120.00993 * 359.74490 * 17 16 15 28 28 C 1.37960 * 120.00964 * 0.02562 * 27 17 16 29 29 H 1.08997 * 109.47313 * 299.99710 * 1 2 3 30 30 H 1.09003 * 109.47458 * 60.00467 * 1 2 3 31 31 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47313 * 240.00289 * 2 1 3 33 33 H 1.09003 * 109.47458 * 119.99533 * 2 1 3 34 34 H 1.09001 * 109.46833 * 59.99796 * 5 3 2 35 35 H 1.09000 * 109.46980 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.47249 * 300.00535 * 5 3 2 37 37 H 1.09001 * 109.47058 * 295.00108 * 6 3 2 38 38 H 1.08996 * 109.47232 * 55.00094 * 6 3 2 39 39 H 1.08997 * 109.47235 * 300.00711 * 7 6 3 40 40 H 1.09006 * 109.46948 * 60.00125 * 7 6 3 41 41 H 0.97002 * 120.00405 * 0.02562 * 8 7 6 42 42 H 0.96999 * 119.99966 * 355.50582 * 13 11 9 43 43 H 1.08006 * 120.00568 * 0.02562 * 15 14 13 44 44 H 1.07993 * 119.99888 * 180.22976 * 16 15 14 45 45 H 0.97005 * 119.99874 * 180.02562 * 22 21 19 46 46 H 1.08002 * 119.99024 * 179.97438 * 27 17 16 47 47 H 1.07998 * 120.00317 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8417 5 6 1.6351 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0643 2.8851 -0.2511 8 7 5.5244 2.8870 -0.3708 9 6 6.1890 4.0531 -0.4942 10 8 5.5779 5.1015 -0.5056 11 6 7.6771 4.0549 -0.6168 12 8 8.2884 3.0062 -0.6058 13 7 8.3417 5.2209 -0.7396 14 6 9.7389 5.2301 -0.7598 15 6 10.4356 6.2842 -0.1807 16 6 11.8152 6.2906 -0.1965 17 6 12.5080 5.2486 -0.8005 18 8 13.8653 5.2579 -0.8209 19 6 14.4736 4.2773 -1.5177 20 1 13.8874 3.4850 -1.9591 21 6 15.8520 4.2858 -1.6675 22 7 16.5662 5.2508 -1.1293 23 14 16.6951 2.9266 -2.6324 24 1 15.6762 1.9679 -3.1304 25 1 17.4251 3.5162 -3.7834 26 1 17.6543 2.2149 -1.7501 27 6 11.8117 4.1973 -1.3840 28 6 10.4323 4.1880 -1.3644 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.0697 1.5875 2.1492 35 1 1.9980 3.1544 1.3072 36 1 0.5488 2.1252 1.3970 37 1 4.0029 0.9837 0.7597 38 1 3.8570 0.8802 -1.0112 39 1 3.6261 3.3459 -1.1364 40 1 3.7720 3.4495 0.6345 41 1 6.0129 2.0489 -0.3621 42 1 7.8502 6.0538 -0.8140 43 1 9.8972 7.0963 0.2853 44 1 12.3566 7.1077 0.2566 45 1 17.5305 5.2570 -1.2345 46 1 12.3505 3.3877 -1.8537 47 1 9.8912 3.3710 -1.8183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118430547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:39 Heat of formation + Delta-G solvation = -108.655725 kcal Electronic energy + Delta-G solvation = -27079.300755 eV Core-core repulsion = 23033.561266 eV Total energy + Delta-G solvation = -4045.739489 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.07443 -40.81671 -39.87688 -38.37759 -38.21593 -36.13509 -35.25745 -34.17308 -32.07888 -31.89933 -30.00023 -29.08215 -27.45681 -26.66117 -25.21388 -23.95937 -23.06341 -22.55619 -21.48999 -20.76055 -20.14595 -19.58517 -18.84637 -18.32484 -17.42956 -17.23495 -16.75554 -16.45366 -16.25238 -16.00140 -15.72153 -15.50851 -15.36822 -15.17285 -14.99224 -14.67887 -14.54635 -14.29121 -14.17452 -13.60449 -13.56221 -13.39471 -13.26978 -12.84175 -12.80675 -12.75740 -12.71269 -12.55591 -12.42657 -12.10244 -12.00856 -11.58611 -11.46465 -11.39815 -11.34385 -11.12453 -10.72560 -10.58270 -10.31501 -9.87871 -8.70330 -8.47607 -6.14366 0.05402 0.50955 0.69185 1.24397 1.36457 1.43919 1.54272 2.06135 2.17805 2.56819 2.79307 3.12780 3.33857 3.48799 3.71195 3.92439 4.01138 4.06096 4.08421 4.24003 4.35155 4.45057 4.54363 4.57453 4.57805 4.64493 4.69816 4.75565 4.87048 4.93588 5.04944 5.06754 5.07186 5.16225 5.19543 5.21547 5.26862 5.27520 5.29379 5.35116 5.49549 5.55659 5.57676 5.66464 5.86465 6.01344 6.09567 6.30380 6.69154 6.87920 6.97307 7.75223 8.75123 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.001716 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.659360 B =16310.698698 C =17309.258251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.119 4.119 3 C -0.085 4.085 4 H 0.075 0.925 5 C -0.155 4.155 6 C -0.123 4.123 7 C 0.114 3.886 8 N -0.688 5.688 9 C 0.518 3.482 10 O -0.538 6.538 11 C 0.499 3.501 12 O -0.530 6.530 13 N -0.619 5.619 14 C 0.048 3.952 15 C -0.071 4.071 16 C -0.179 4.179 17 C 0.113 3.887 18 O -0.225 6.225 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.019 4.019 22 N -0.916 5.916 23 Si 1.017 2.983 24 H -0.254 1.254 25 H -0.267 1.267 26 H -0.268 1.268 27 C -0.227 4.227 28 C -0.068 4.068 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.420 0.580 42 H 0.429 0.571 43 H 0.165 0.835 44 H 0.131 0.869 45 H 0.273 0.727 46 H 0.122 0.878 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.082 -7.905 1.593 32.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.104 4.104 4 H 0.093 0.907 5 C -0.212 4.212 6 C -0.160 4.160 7 C -0.008 4.008 8 N -0.341 5.341 9 C 0.298 3.702 10 O -0.416 6.416 11 C 0.281 3.719 12 O -0.407 6.407 13 N -0.266 5.266 14 C -0.045 4.045 15 C -0.091 4.091 16 C -0.199 4.199 17 C 0.061 3.939 18 O -0.131 6.131 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.217 4.217 22 N -0.554 5.554 23 Si 0.836 3.164 24 H -0.177 1.177 25 H -0.192 1.192 26 H -0.193 1.193 27 C -0.247 4.247 28 C -0.088 4.088 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.257 0.743 42 H 0.268 0.732 43 H 0.182 0.818 44 H 0.148 0.852 45 H 0.082 0.918 46 H 0.140 0.860 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -30.793 -7.702 1.736 31.789 hybrid contribution 0.860 -0.415 -0.365 1.022 sum -29.933 -8.117 1.371 31.044 Atomic orbital electron populations 1.21827 0.95634 1.01765 1.02018 1.21560 0.96156 0.95690 1.02247 1.21067 0.93557 0.96905 0.98907 0.90683 1.21983 1.01854 1.00386 0.96959 1.21851 0.96411 0.94066 1.03716 1.21743 0.76939 0.99319 1.02775 1.45822 1.09071 1.08511 1.70666 1.19691 0.87152 0.85070 0.78321 1.90766 1.69216 1.31774 1.49814 1.20462 0.89048 0.84315 0.78086 1.90777 1.69448 1.31802 1.48627 1.42785 1.04385 1.10364 1.69084 1.17376 0.81922 0.99136 1.06068 1.20783 0.92119 0.98514 0.97665 1.20301 0.93902 0.98958 1.06720 1.19974 0.84233 0.94698 0.94951 1.83935 1.14816 1.49467 1.64892 1.21847 0.91215 1.03774 1.32170 0.88191 1.26539 0.95763 1.01019 0.98419 1.70181 1.07247 1.33830 1.44169 0.84551 0.78183 0.76248 0.77374 1.17704 1.19221 1.19320 1.21104 0.94621 1.00791 1.08193 1.20941 0.92633 0.98305 0.96921 0.92364 0.92731 0.92673 0.91755 0.91878 0.92574 0.92717 0.91947 0.90465 0.90241 0.90894 0.90713 0.74277 0.73163 0.81802 0.85154 0.91766 0.86023 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 9.67 71.98 0.70 -0.41 16 2 C -0.12 -0.87 5.40 30.59 0.17 -0.70 16 3 C -0.09 -0.65 2.39 -10.79 -0.03 -0.67 16 4 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 5 C -0.15 -1.25 8.70 71.98 0.63 -0.62 16 6 C -0.12 -1.00 4.80 30.59 0.15 -0.86 16 7 C 0.11 1.42 5.43 86.38 0.47 1.89 16 8 N -0.69 -11.33 5.55 -464.54 -2.58 -13.91 16 9 C 0.52 11.58 7.88 87.23 0.69 12.27 16 10 O -0.54 -13.70 16.48 -3.29 -0.05 -13.76 16 11 C 0.50 13.29 7.73 87.23 0.67 13.96 16 12 O -0.53 -16.69 13.91 -3.37 -0.05 -16.74 16 13 N -0.62 -16.27 5.32 -304.75 -1.62 -17.89 16 14 C 0.05 1.59 6.30 38.24 0.24 1.83 16 15 C -0.07 -2.28 9.96 22.39 0.22 -2.06 16 16 C -0.18 -7.27 9.98 22.37 0.22 -7.04 16 17 C 0.11 5.54 6.65 22.61 0.15 5.69 16 18 O -0.22 -13.37 9.75 -22.53 -0.22 -13.59 16 19 C -0.41 -24.04 9.48 67.92 0.64 -23.40 16 20 H 0.10 5.39 5.19 -2.91 -0.02 5.38 16 21 C -0.02 -1.10 5.49 84.83 0.47 -0.63 16 22 N -0.92 -55.66 13.67 21.61 0.30 -55.36 16 23 Si 1.02 42.85 29.55 68.60 2.03 44.88 16 24 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 27 C -0.23 -10.23 9.16 22.37 0.20 -10.03 16 28 C -0.07 -2.61 8.69 22.39 0.19 -2.42 16 29 H 0.06 0.40 6.56 -2.39 -0.02 0.39 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.05 0.49 6.57 -2.39 -0.02 0.47 16 36 H 0.06 0.46 6.56 -2.39 -0.02 0.45 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.99 6.57 -2.38 -0.02 0.98 16 41 H 0.42 6.11 7.94 -92.71 -0.74 5.37 16 42 H 0.43 9.03 8.30 -92.71 -0.77 8.26 16 43 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 44 H 0.13 5.04 8.06 -2.91 -0.02 5.02 16 45 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 46 H 0.12 5.61 5.63 -2.91 -0.02 5.59 16 47 H 0.13 4.90 6.22 -2.91 -0.02 4.88 16 Total: -1.00 -72.48 390.52 3.10 -69.38 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.49 Total: 30.17 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 5.79 Total: -13.19 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -3.90 Total: -87.16 kcal Atomic # 8 Polarization: -43.76 SS G_CDS: -0.32 Total: -44.08 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -72.48 3.10 -69.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118430547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.272 kcal (2) G-P(sol) polarization free energy of solvation -72.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds