Wall clock time and date at job start Tue Mar 31 2020 18:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00190 * 2 1 4 4 N 1.46500 * 109.47255 * 125.00173 * 3 2 1 5 5 C 1.36707 * 127.13429 * 270.14065 * 4 3 2 6 6 C 1.50701 * 126.34143 * 0.04024 * 5 4 3 7 7 C 1.53000 * 109.46781 * 270.25687 * 6 5 4 8 8 C 1.50701 * 109.47162 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00079 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46876 * 60.00353 * 12 10 8 14 14 H 1.48501 * 109.47124 * 179.97438 * 12 10 8 15 15 H 1.48489 * 109.47114 * 300.00043 * 12 10 8 16 16 N 1.30311 * 107.31158 * 180.27648 * 5 4 3 17 17 N 1.28521 * 110.05584 * 359.76214 * 16 5 4 18 18 C 1.31231 * 109.85786 * 359.97438 * 17 16 5 19 19 N 1.38645 * 126.47575 * 179.97438 * 18 17 16 20 20 C 1.40041 * 120.00059 * 0.02562 * 19 18 17 21 21 C 1.40436 * 125.97915 * 359.97438 * 20 19 18 22 22 C 1.35234 * 107.86459 * 179.97438 * 21 20 19 23 23 N 1.34971 * 107.86944 * 0.02562 * 22 21 20 24 24 C 1.46502 * 125.97365 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47047 * 124.98683 * 24 23 22 26 26 F 1.39894 * 109.46849 * 180.02562 * 25 24 23 27 27 N 1.31244 * 125.97564 * 179.97438 * 20 19 18 28 28 H 1.08001 * 119.99314 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00052 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00027 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46951 * 4.99447 * 3 2 1 32 32 H 1.08999 * 109.46882 * 244.99834 * 3 2 1 33 33 H 1.08999 * 109.47468 * 30.25781 * 6 5 4 34 34 H 1.09001 * 109.46947 * 150.26552 * 6 5 4 35 35 H 1.08995 * 109.47878 * 300.00473 * 7 6 5 36 36 H 1.09005 * 109.47109 * 60.00539 * 7 6 5 37 37 H 0.96999 * 120.00195 * 179.97438 * 11 10 8 38 38 H 0.96999 * 119.99914 * 180.02562 * 19 18 17 39 39 H 1.07995 * 126.06750 * 0.02562 * 21 20 19 40 40 H 1.07999 * 126.06882 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47046 * 244.98450 * 24 23 22 42 42 H 1.08995 * 109.47139 * 4.98485 * 24 23 22 43 43 H 1.09004 * 109.47007 * 299.99791 * 25 24 23 44 44 H 1.08995 * 109.47312 * 59.99908 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.7440 1.7909 2.3946 6 6 1.4456 2.3709 2.8935 7 6 1.4413 3.8836 2.6643 8 6 0.1427 4.4635 3.1626 9 1 -0.6047 3.8178 3.5995 10 6 -0.0913 5.8184 3.0608 11 7 0.8189 6.6049 2.5293 12 14 -1.7008 6.5374 3.6792 13 1 -1.8430 6.2568 5.1305 14 1 -1.7050 8.0056 3.4566 15 1 -2.8335 5.9214 2.9426 16 7 3.8381 1.6388 3.0860 17 7 4.7537 1.1142 2.3523 18 6 4.2889 0.9013 1.1437 19 7 4.9842 0.3495 0.0786 20 6 6.3190 -0.0417 0.2412 21 6 7.0729 0.0672 1.4210 22 6 8.3098 -0.4180 1.1693 23 7 8.3431 -0.8192 -0.1190 24 6 9.4941 -1.4089 -0.8073 25 6 9.0913 -2.7546 -1.4136 26 9 10.1906 -3.3178 -2.0704 27 7 7.0843 -0.5743 -0.6825 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 0.6142 1.9191 2.3525 34 1 1.3410 2.1645 3.9587 35 1 2.2727 4.3355 3.2053 36 1 1.5459 4.0900 1.5991 37 1 0.6541 7.5580 2.4573 38 1 4.5461 0.2344 -0.7791 39 1 6.7261 0.4667 2.3625 40 1 9.1263 -0.4743 1.8740 41 1 9.8263 -0.7381 -1.5997 42 1 10.3053 -1.5595 -0.0950 43 1 8.7591 -3.4253 -0.6212 44 1 8.2801 -2.6039 -2.1259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121521638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:19 Heat of formation + Delta-G solvation = 138.303950 kcal Electronic energy + Delta-G solvation = -27593.996321 eV Core-core repulsion = 23500.091005 eV Total energy + Delta-G solvation = -4093.905317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.16013 -42.62810 -41.26251 -36.54324 -36.13771 -34.13458 -33.56243 -32.59747 -31.61772 -30.35094 -28.61939 -28.15917 -26.80123 -25.26843 -23.97325 -22.21195 -22.07245 -21.17262 -20.67860 -19.89894 -19.67704 -17.74766 -17.53510 -16.88285 -16.61177 -16.17929 -16.07988 -16.04379 -15.93182 -15.17903 -14.80567 -14.56011 -14.43597 -13.83398 -13.69454 -13.52005 -13.15823 -13.07758 -13.04449 -12.50470 -12.29972 -12.13313 -11.67640 -11.62740 -11.38120 -11.21452 -11.01061 -10.97965 -10.71906 -10.66798 -10.20479 -10.00276 -9.83155 -9.77488 -9.66283 -9.26219 -9.18217 -8.63206 -8.41864 -7.55349 -6.06234 -4.10593 1.62880 1.65325 1.95084 2.22362 2.57400 2.95094 3.29709 3.31175 3.35271 3.36768 3.42249 3.88261 4.15342 4.39999 4.50404 4.52518 4.56608 4.66816 4.69397 4.85138 4.94438 5.02068 5.17647 5.24045 5.29652 5.38255 5.42753 5.48831 5.65773 5.72347 5.87555 6.11995 6.29417 6.34671 6.43602 6.48309 6.54260 6.68891 6.88827 6.91605 7.18890 7.27118 7.54056 7.68363 7.75208 7.91221 8.28641 8.95523 9.23265 9.54060 11.04668 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.002188 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.327019 B =12793.221258 C =13524.443541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.189 4.189 3 C 0.134 3.866 4 N -0.489 5.489 5 C 0.217 3.783 6 C -0.030 4.030 7 C 0.032 3.968 8 C -0.524 4.524 9 H 0.058 0.942 10 C 0.059 3.941 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.275 1.275 14 H -0.288 1.288 15 H -0.277 1.277 16 N -0.289 5.289 17 N -0.321 5.321 18 C 0.415 3.585 19 N -0.605 5.605 20 C 0.340 3.660 21 C -0.263 4.263 22 C 0.067 3.933 23 N -0.379 5.379 24 C 0.115 3.885 25 C 0.051 3.949 26 F -0.211 7.211 27 N -0.340 5.340 28 H 0.109 0.891 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.026 0.974 36 H 0.013 0.987 37 H 0.262 0.738 38 H 0.419 0.581 39 H 0.181 0.819 40 H 0.178 0.822 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -18.194 -9.404 23.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.208 4.208 3 C 0.011 3.989 4 N -0.187 5.187 5 C -0.051 4.051 6 C -0.070 4.070 7 C -0.007 4.007 8 C -0.563 4.563 9 H 0.077 0.923 10 C -0.143 4.143 11 N -0.530 5.530 12 Si 0.722 3.278 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.202 1.202 16 N -0.126 5.126 17 N -0.166 5.166 18 C 0.058 3.942 19 N -0.243 5.243 20 C 0.083 3.917 21 C -0.295 4.295 22 C -0.077 4.077 23 N -0.164 5.164 24 C -0.008 4.008 25 C -0.004 4.004 26 F -0.192 7.192 27 N -0.171 5.171 28 H 0.127 0.873 29 H 0.122 0.878 30 H 0.129 0.871 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.045 0.955 36 H 0.031 0.969 37 H 0.072 0.928 38 H 0.256 0.744 39 H 0.198 0.802 40 H 0.195 0.805 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 12.965 -18.390 -9.409 24.389 hybrid contribution -1.861 0.647 -0.609 2.062 sum 11.105 -17.744 -10.018 23.206 Atomic orbital electron populations 1.24061 0.95543 1.02962 0.96290 1.23047 0.96533 0.97606 1.03581 1.20983 0.92446 0.98197 0.87245 1.46164 1.09658 1.50317 1.12542 1.25388 1.00035 0.99704 0.79962 1.20432 0.85950 0.99369 1.01211 1.19078 0.98029 0.86380 0.97182 1.21099 1.01732 0.92729 1.40690 0.92344 1.25013 0.96826 0.97226 0.95203 1.69958 1.34020 1.04703 1.44365 0.86625 0.83716 0.77944 0.79525 1.20071 1.21323 1.20240 1.74043 0.97112 1.16619 1.24814 1.74432 1.23032 1.21262 0.97916 1.20497 0.82433 1.00443 0.90801 1.39145 1.08027 1.66435 1.10702 1.18722 0.84255 0.95661 0.93103 1.21941 0.92820 1.13299 1.01394 1.22553 0.99474 0.99225 0.86421 1.47789 1.09054 1.51082 1.08491 1.22078 0.85282 0.94538 0.98884 1.22206 0.86666 0.93711 0.97853 1.92788 1.56884 1.86345 1.83171 1.77277 0.91025 1.29014 1.19801 0.87273 0.87761 0.87104 0.86720 0.88839 0.91268 0.89247 0.95534 0.96880 0.92805 0.74413 0.80206 0.80511 0.88899 0.87452 0.90119 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 14.32 29.01 0.42 -1.03 16 2 C -0.19 -1.97 9.85 -36.02 -0.35 -2.33 16 3 C 0.13 1.63 6.20 -5.19 -0.03 1.59 16 4 N -0.49 -7.81 2.79 -115.34 -0.32 -8.14 16 5 C 0.22 4.17 7.32 -154.03 -1.13 3.04 16 6 C -0.03 -0.59 5.36 -27.88 -0.15 -0.74 16 7 C 0.03 0.78 4.95 -27.88 -0.14 0.64 16 8 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 9 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 12 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 N -0.29 -6.06 12.18 32.99 0.40 -5.66 16 17 N -0.32 -6.13 9.17 30.34 0.28 -5.85 16 18 C 0.42 6.82 8.57 -318.72 -2.73 4.09 16 19 N -0.60 -8.14 5.60 -12.24 -0.07 -8.21 16 20 C 0.34 4.72 8.12 -154.47 -1.25 3.46 16 21 C -0.26 -3.56 9.78 -39.82 -0.39 -3.95 16 22 C 0.07 0.67 11.43 -17.24 -0.20 0.47 16 23 N -0.38 -3.77 3.68 -61.38 -0.23 -3.99 16 24 C 0.11 0.73 6.96 -4.04 -0.03 0.70 16 25 C 0.05 0.34 7.74 37.16 0.29 0.62 16 26 F -0.21 -1.70 17.36 2.25 0.04 -1.66 16 27 N -0.34 -4.29 12.43 31.42 0.39 -3.90 16 28 H 0.11 1.07 7.84 -52.49 -0.41 0.66 16 29 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.11 1.50 7.55 -51.93 -0.39 1.11 16 32 H 0.09 0.90 7.66 -51.93 -0.40 0.51 16 33 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 34 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 38 H 0.42 4.51 8.28 -40.82 -0.34 4.17 16 39 H 0.18 2.77 5.93 -52.49 -0.31 2.46 16 40 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.11 0.40 8.07 -51.93 -0.42 -0.02 16 43 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -33.89 384.90 -10.13 -44.02 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.03 Total: 3.32 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -6.11 Total: -6.19 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 1.19 Total: -61.14 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.89 -10.13 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121521638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.327 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds