Wall clock time and date at job start Tue Mar 31 2020 18:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00190 * 2 1 4 4 N 1.46500 * 109.47255 * 125.00173 * 3 2 1 5 5 C 1.36707 * 127.13429 * 270.14065 * 4 3 2 6 6 C 1.50701 * 126.34143 * 0.04024 * 5 4 3 7 7 C 1.53000 * 109.46781 * 270.25687 * 6 5 4 8 8 C 1.50701 * 109.47162 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00059 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00079 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.46876 * 60.00353 * 12 10 8 14 14 H 1.48501 * 109.47124 * 179.97438 * 12 10 8 15 15 H 1.48489 * 109.47114 * 300.00043 * 12 10 8 16 16 N 1.30311 * 107.31158 * 180.27648 * 5 4 3 17 17 N 1.28521 * 110.05584 * 359.76214 * 16 5 4 18 18 C 1.31231 * 109.85786 * 359.97438 * 17 16 5 19 19 N 1.38645 * 126.47575 * 179.97438 * 18 17 16 20 20 C 1.40041 * 120.00059 * 0.02562 * 19 18 17 21 21 C 1.40436 * 125.97915 * 359.97438 * 20 19 18 22 22 C 1.35234 * 107.86459 * 179.97438 * 21 20 19 23 23 N 1.34971 * 107.86944 * 0.02562 * 22 21 20 24 24 C 1.46502 * 125.97365 * 180.02562 * 23 22 21 25 25 C 1.53001 * 109.47047 * 124.98683 * 24 23 22 26 26 F 1.39894 * 109.46849 * 180.02562 * 25 24 23 27 27 N 1.31244 * 125.97564 * 179.97438 * 20 19 18 28 28 H 1.08001 * 119.99314 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00052 * 180.02562 * 1 2 3 30 30 H 1.07998 * 120.00027 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.46951 * 4.99447 * 3 2 1 32 32 H 1.08999 * 109.46882 * 244.99834 * 3 2 1 33 33 H 1.08999 * 109.47468 * 30.25781 * 6 5 4 34 34 H 1.09001 * 109.46947 * 150.26552 * 6 5 4 35 35 H 1.08995 * 109.47878 * 300.00473 * 7 6 5 36 36 H 1.09005 * 109.47109 * 60.00539 * 7 6 5 37 37 H 0.96999 * 120.00195 * 179.97438 * 11 10 8 38 38 H 0.96999 * 119.99914 * 180.02562 * 19 18 17 39 39 H 1.07995 * 126.06750 * 0.02562 * 21 20 19 40 40 H 1.07999 * 126.06882 * 180.02562 * 22 21 20 41 41 H 1.09004 * 109.47046 * 244.98450 * 24 23 22 42 42 H 1.08995 * 109.47139 * 4.98485 * 24 23 22 43 43 H 1.09004 * 109.47007 * 299.99791 * 25 24 23 44 44 H 1.08995 * 109.47312 * 59.99908 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.7440 1.7909 2.3946 6 6 1.4456 2.3709 2.8935 7 6 1.4413 3.8836 2.6643 8 6 0.1427 4.4635 3.1626 9 1 -0.6047 3.8178 3.5995 10 6 -0.0913 5.8184 3.0608 11 7 0.8189 6.6049 2.5293 12 14 -1.7008 6.5374 3.6792 13 1 -1.8430 6.2568 5.1305 14 1 -1.7050 8.0056 3.4566 15 1 -2.8335 5.9214 2.9426 16 7 3.8381 1.6388 3.0860 17 7 4.7537 1.1142 2.3523 18 6 4.2889 0.9013 1.1437 19 7 4.9842 0.3495 0.0786 20 6 6.3190 -0.0417 0.2412 21 6 7.0729 0.0672 1.4210 22 6 8.3098 -0.4180 1.1693 23 7 8.3431 -0.8192 -0.1190 24 6 9.4941 -1.4089 -0.8073 25 6 9.0913 -2.7546 -1.4136 26 9 10.1906 -3.3178 -2.0704 27 7 7.0843 -0.5743 -0.6825 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3587 2.1316 0.0895 32 1 2.6214 1.4025 -0.9314 33 1 0.6142 1.9191 2.3525 34 1 1.3410 2.1645 3.9587 35 1 2.2727 4.3355 3.2053 36 1 1.5459 4.0900 1.5991 37 1 0.6541 7.5580 2.4573 38 1 4.5461 0.2344 -0.7791 39 1 6.7261 0.4667 2.3625 40 1 9.1263 -0.4743 1.8740 41 1 9.8263 -0.7381 -1.5997 42 1 10.3053 -1.5595 -0.0950 43 1 8.7591 -3.4253 -0.6212 44 1 8.2801 -2.6039 -2.1259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121521638.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:18 Heat of formation + Delta-G solvation = 122.040336 kcal Electronic energy + Delta-G solvation = -27594.701564 eV Core-core repulsion = 23500.091005 eV Total energy + Delta-G solvation = -4094.610560 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.74476 -43.98757 -42.16148 -37.63709 -37.23803 -35.87840 -34.45997 -33.87739 -33.20216 -31.35637 -29.92346 -29.18762 -27.88270 -27.07001 -24.74419 -23.77198 -23.26502 -22.22357 -21.80505 -20.90479 -20.86448 -18.79196 -18.52613 -18.45195 -17.50895 -17.37199 -17.27796 -16.95158 -16.70306 -16.45828 -15.94756 -15.73974 -15.28893 -15.13728 -14.87798 -14.62309 -14.51913 -14.23460 -13.97530 -13.91904 -13.42074 -13.26154 -12.99248 -12.80362 -12.56183 -12.54760 -12.41180 -12.24668 -12.00230 -11.93940 -11.70997 -11.60147 -11.32728 -11.19220 -11.07950 -10.57278 -10.51819 -10.32646 -9.63638 -8.75876 -8.17031 -6.29143 0.58896 0.63591 1.03267 1.15746 1.45301 1.48510 1.55802 1.65855 1.78179 2.11255 2.26709 2.44747 3.17115 3.30799 3.44463 3.66923 3.68494 3.77492 3.85027 3.93923 3.99603 4.05678 4.12886 4.25000 4.30235 4.46904 4.55885 4.69060 4.71795 4.82635 4.84356 4.85221 4.88072 4.96697 5.03628 5.47794 5.50237 5.56339 5.60344 5.64025 5.66105 5.82156 6.05545 6.10768 6.17642 6.20575 6.76773 6.86927 7.40698 7.82845 8.94520 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.002188 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.327019 B =12793.221258 C =13524.443541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C 0.127 3.873 4 N -0.483 5.483 5 C 0.201 3.799 6 C -0.012 4.012 7 C 0.043 3.957 8 C -0.536 4.536 9 H 0.073 0.927 10 C 0.000 4.000 11 N -0.935 5.935 12 Si 0.966 3.034 13 H -0.268 1.268 14 H -0.290 1.290 15 H -0.260 1.260 16 N -0.323 5.323 17 N -0.346 5.346 18 C 0.429 3.571 19 N -0.594 5.594 20 C 0.318 3.682 21 C -0.305 4.305 22 C 0.094 3.906 23 N -0.370 5.370 24 C 0.110 3.890 25 C 0.056 3.944 26 F -0.218 7.218 27 N -0.351 5.351 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.118 0.882 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.088 0.912 35 H -0.017 1.017 36 H -0.005 1.005 37 H 0.262 0.738 38 H 0.430 0.570 39 H 0.157 0.843 40 H 0.221 0.779 41 H 0.099 0.901 42 H 0.143 0.857 43 H 0.088 0.912 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.595 -19.888 -10.166 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.215 4.215 3 C 0.006 3.994 4 N -0.180 5.180 5 C -0.068 4.068 6 C -0.052 4.052 7 C 0.004 3.996 8 C -0.574 4.574 9 H 0.091 0.909 10 C -0.198 4.198 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.193 1.193 14 H -0.215 1.215 15 H -0.185 1.185 16 N -0.160 5.160 17 N -0.192 5.192 18 C 0.071 3.929 19 N -0.234 5.234 20 C 0.062 3.938 21 C -0.336 4.336 22 C -0.052 4.052 23 N -0.155 5.155 24 C -0.011 4.011 25 C 0.000 4.000 26 F -0.199 7.199 27 N -0.182 5.182 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.136 0.864 31 H 0.122 0.878 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.002 0.998 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.270 0.730 39 H 0.174 0.826 40 H 0.238 0.762 41 H 0.118 0.882 42 H 0.161 0.839 43 H 0.106 0.894 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.893 -20.126 -10.229 25.998 hybrid contribution -1.672 1.094 -0.469 2.053 sum 11.220 -19.032 -10.697 24.547 Atomic orbital electron populations 1.24247 0.95252 1.03824 0.94501 1.22943 0.96748 0.96738 1.05110 1.21289 0.92240 0.99034 0.86861 1.46258 1.09955 1.49438 1.12392 1.25104 0.99489 1.00840 0.81358 1.20110 0.87400 0.95993 1.01664 1.18847 0.95929 0.89648 0.95149 1.21560 1.02463 0.93255 1.40123 0.90896 1.25984 1.00564 0.97854 0.95371 1.70116 1.36393 1.04955 1.46014 0.85480 0.79427 0.76802 0.79217 1.19314 1.21538 1.18475 1.73947 0.97999 1.17517 1.26500 1.74394 1.23049 1.22667 0.99128 1.20604 0.82461 0.99014 0.90827 1.39109 1.08171 1.65871 1.10287 1.18916 0.84384 0.96795 0.93741 1.21901 0.94782 1.16122 1.00817 1.23064 0.99152 0.96290 0.86687 1.48105 1.08865 1.49845 1.08649 1.22420 0.84609 0.94147 0.99966 1.22152 0.86073 0.94005 0.97747 1.92777 1.57261 1.86480 1.83387 1.77224 0.92108 1.28915 1.19960 0.87568 0.85726 0.86444 0.87793 0.86396 0.88805 0.89331 0.99820 0.98692 0.92887 0.73005 0.82554 0.76229 0.88240 0.83941 0.89391 0.90131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 14.32 67.78 0.97 -1.45 16 2 C -0.20 -3.83 9.85 25.65 0.25 -3.57 16 3 C 0.13 3.01 6.20 85.63 0.53 3.55 16 4 N -0.48 -15.63 2.79 -518.82 -1.45 -17.08 16 5 C 0.20 7.97 7.32 137.65 1.01 8.98 16 6 C -0.01 -0.48 5.36 29.85 0.16 -0.32 16 7 C 0.04 2.19 4.95 29.85 0.15 2.33 16 8 C -0.54 -28.85 9.11 25.60 0.23 -28.62 16 9 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 10 C 0.00 0.01 5.46 84.65 0.46 0.47 16 11 N -0.93 -56.22 13.29 21.45 0.28 -55.93 16 12 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 13 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 16 N -0.32 -14.11 12.18 -49.55 -0.60 -14.71 16 17 N -0.35 -13.77 9.17 -57.94 -0.53 -14.30 16 18 C 0.43 14.36 8.57 260.06 2.23 16.59 16 19 N -0.59 -15.97 5.60 -192.64 -1.08 -17.05 16 20 C 0.32 8.73 8.12 133.37 1.08 9.81 16 21 C -0.30 -8.21 9.78 22.11 0.22 -7.99 16 22 C 0.09 1.66 11.43 83.52 0.95 2.62 16 23 N -0.37 -6.49 3.68 -348.10 -1.28 -7.77 16 24 C 0.11 1.04 6.96 86.38 0.60 1.65 16 25 C 0.06 0.61 7.74 71.98 0.56 1.17 16 26 F -0.22 -3.06 17.36 44.97 0.78 -2.28 16 27 N -0.35 -8.43 12.43 -54.49 -0.68 -9.11 16 28 H 0.11 1.91 7.84 -2.91 -0.02 1.89 16 29 H 0.12 1.65 8.06 -2.91 -0.02 1.63 16 30 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.10 2.72 7.55 -2.39 -0.02 2.70 16 32 H 0.12 2.16 7.66 -2.39 -0.02 2.14 16 33 H 0.09 3.26 7.95 -2.39 -0.02 3.24 16 34 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 35 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 36 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 37 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.43 9.00 8.28 -92.71 -0.77 8.24 16 39 H 0.16 5.03 5.93 -2.91 -0.02 5.02 16 40 H 0.22 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 42 H 0.14 0.42 8.07 -2.39 -0.02 0.40 16 43 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 44 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -76.43 384.90 7.14 -69.29 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.26 Total: 18.98 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 9.41 Total: 5.21 kcal Atomic # 7 Polarization: -130.62 SS G_CDS: -5.33 Total: -135.95 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.78 Total: -2.28 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -76.43 7.14 -69.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121521638.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.331 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds