Wall clock time and date at job start Tue Mar 31 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47071 * 2 1 4 4 H 1.08995 * 109.47540 * 185.53461 * 3 2 1 5 5 C 1.52999 * 109.47217 * 305.53926 * 3 2 1 6 6 C 1.53004 * 109.46930 * 295.66819 * 5 3 2 7 7 F 1.39896 * 109.46965 * 65.63854 * 6 5 3 8 8 F 1.39904 * 109.46941 * 185.64023 * 6 5 3 9 9 F 1.39898 * 109.46973 * 305.64049 * 6 5 3 10 10 C 1.50700 * 109.47049 * 65.53555 * 3 2 1 11 11 O 1.21287 * 120.00125 * 267.58714 * 10 3 2 12 12 N 1.34774 * 120.00161 * 87.58247 * 10 3 2 13 13 C 1.47849 * 134.36514 * 174.86337 * 12 10 3 14 14 C 1.52570 * 85.66107 * 156.37637 * 13 12 10 15 15 C 1.47856 * 134.36408 * 354.86773 * 12 10 3 16 16 C 1.53920 * 115.91989 * 264.97667 * 14 13 12 17 17 C 1.55161 * 101.43350 * 264.39727 * 16 14 13 18 18 N 1.47548 * 105.00605 * 324.38418 * 17 16 14 19 19 C 1.36942 * 125.65492 * 203.91596 * 18 17 16 20 20 H 1.08001 * 119.99740 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00092 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99886 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99925 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46775 * 90.00292 * 23 21 19 25 25 H 1.48501 * 109.47326 * 209.99872 * 23 21 19 26 26 H 1.48493 * 109.47388 * 330.00374 * 23 21 19 27 27 C 1.47356 * 108.68534 * 23.91129 * 18 17 16 28 28 H 1.08998 * 109.46547 * 186.37926 * 1 2 3 29 29 H 1.09003 * 109.46934 * 306.37086 * 1 2 3 30 30 H 1.08995 * 109.47322 * 66.37415 * 1 2 3 31 31 H 1.08997 * 109.47444 * 240.00332 * 2 1 3 32 32 H 1.09005 * 109.47328 * 119.99576 * 2 1 3 33 33 H 1.09005 * 109.47264 * 55.66156 * 5 3 2 34 34 H 1.08994 * 109.47362 * 175.66643 * 5 3 2 35 35 H 1.08996 * 113.84255 * 42.19080 * 13 12 10 36 36 H 1.09008 * 113.95501 * 270.57140 * 13 12 10 37 37 H 1.08992 * 113.84211 * 89.43460 * 15 12 10 38 38 H 1.09010 * 113.83608 * 317.81133 * 15 12 10 39 39 H 1.08998 * 111.00786 * 146.37228 * 16 14 13 40 40 H 1.08995 * 111.08435 * 22.45892 * 16 14 13 41 41 H 1.08996 * 110.33568 * 205.49962 * 17 16 14 42 42 H 1.08994 * 110.41760 * 83.30568 * 17 16 14 43 43 H 0.97004 * 119.99724 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.98128 * 117.31108 * 27 18 17 45 45 H 1.08997 * 109.99097 * 238.57243 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1255 1.4442 -0.0991 5 6 1.4195 2.2029 -1.1738 6 6 1.8997 1.5886 -2.4903 7 9 1.4029 0.2859 -2.6055 8 9 1.4369 2.3606 -3.5613 9 9 3.2982 1.5576 -2.5077 10 6 1.6527 2.1123 1.2933 11 8 0.6159 2.7374 1.3657 12 7 2.4583 2.0165 2.3694 13 6 2.4460 2.6049 3.7257 14 6 3.2972 1.4044 4.1285 15 6 3.7068 1.2811 2.6641 16 6 2.5332 0.2053 4.7180 17 6 2.6695 0.4721 6.2404 18 7 4.0134 1.0581 6.4067 19 6 4.7576 1.0351 7.5561 20 1 5.7350 1.4941 7.5758 21 6 4.2556 0.4220 8.6958 22 7 3.0646 -0.1378 8.6717 23 14 5.2710 0.3901 10.2634 24 1 4.9634 1.5938 11.0769 25 1 4.9416 -0.8308 11.0419 26 1 6.7151 0.3822 9.9177 27 6 4.4220 1.6719 5.1309 28 1 -0.3632 -1.0213 0.1142 29 1 -0.3633 0.6094 0.8275 30 1 -0.3634 0.4118 -0.9415 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.3330 2.1358 -1.1165 34 1 1.7218 3.2491 -1.1295 35 1 1.4599 2.6214 4.1899 36 1 2.9676 3.5593 3.7989 37 1 4.6127 1.8321 2.4120 38 1 3.7123 0.2561 2.2930 39 1 3.0092 -0.7354 4.4416 40 1 1.4875 0.2173 4.4109 41 1 2.5919 -0.4617 6.7971 42 1 1.9060 1.1752 6.5731 43 1 2.7140 -0.5665 9.4680 44 1 4.5576 2.7456 5.2608 45 1 5.3493 1.2193 4.7798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148620466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:53 Heat of formation + Delta-G solvation = -132.820549 kcal Electronic energy + Delta-G solvation = -30156.652577 eV Core-core repulsion = 25568.008482 eV Total energy + Delta-G solvation = -4588.644095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.45632 -47.94312 -47.89456 -40.79476 -38.92858 -35.89484 -35.57361 -32.25009 -30.98419 -29.78616 -28.77921 -27.33303 -26.11713 -25.48032 -23.80241 -23.67611 -21.71485 -20.37314 -19.21777 -18.88979 -18.57275 -18.35571 -17.59883 -16.87443 -16.44633 -16.09002 -15.90949 -15.39328 -15.06264 -14.76254 -14.69982 -14.42044 -14.30871 -14.14078 -14.03992 -13.83139 -13.67004 -13.31691 -13.19885 -12.90235 -12.57730 -12.50115 -12.23571 -12.04911 -11.97294 -11.74015 -11.48170 -11.27913 -11.23730 -11.04876 -11.00537 -10.82166 -10.47687 -10.13138 -10.04783 -9.92492 -9.74531 -9.52976 -8.70018 -8.61697 -6.89434 -5.69862 -3.11821 2.34197 2.54148 2.79144 3.37369 3.42466 3.44381 3.49435 3.66264 3.74550 4.22511 4.40447 4.43421 4.46958 4.58327 4.77411 4.93697 5.01282 5.12822 5.14359 5.16992 5.36974 5.42495 5.47030 5.48481 5.55591 5.58408 5.76801 5.80701 5.82463 5.85497 5.87086 6.10253 6.14152 6.22074 6.44510 6.51589 6.62923 6.68053 7.45659 7.57336 7.69802 7.80542 8.06806 8.30553 9.16898 9.77657 10.41931 11.34118 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.002408 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.997253 B =11626.593424 C =11787.421525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.128 4.128 3 C -0.106 4.106 4 H 0.102 0.898 5 C -0.153 4.153 6 C 0.454 3.546 7 F -0.177 7.177 8 F -0.184 7.184 9 F -0.183 7.183 10 C 0.546 3.454 11 O -0.543 6.543 12 N -0.637 5.637 13 C 0.126 3.874 14 C -0.102 4.102 15 C 0.112 3.888 16 C -0.119 4.119 17 C 0.154 3.846 18 N -0.604 5.604 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.151 3.849 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.125 0.875 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.107 0.893 42 H 0.013 0.987 43 H 0.252 0.748 44 H 0.026 0.974 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 1.680 -21.733 21.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.165 4.165 3 C -0.128 4.128 4 H 0.120 0.880 5 C -0.192 4.192 6 C 0.400 3.600 7 F -0.159 7.159 8 F -0.165 7.165 9 F -0.165 7.165 10 C 0.334 3.666 11 O -0.421 6.421 12 N -0.371 5.371 13 C 0.005 3.995 14 C -0.103 4.103 15 C -0.011 4.011 16 C -0.157 4.157 17 C 0.029 3.971 18 N -0.330 5.330 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.025 3.975 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.124 0.876 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.044 0.956 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.569 1.936 -21.670 21.908 hybrid contribution 0.682 0.032 0.544 0.873 sum -1.887 1.968 -21.126 21.301 Atomic orbital electron populations 1.21889 0.94709 1.02372 1.02546 1.21756 0.97578 0.93016 1.04189 1.21265 1.02432 0.97056 0.92014 0.87979 1.22786 1.05825 1.01958 0.88589 1.20546 0.75342 0.76616 0.87464 1.93146 1.87368 1.38927 1.96444 1.93195 1.88614 1.75159 1.59573 1.93184 1.30042 1.96359 1.96898 1.19762 0.83363 0.80096 0.83338 1.90706 1.24049 1.43500 1.83819 1.50143 1.25576 1.48174 1.13222 1.23093 1.01030 0.96791 0.78623 1.22471 0.97602 0.96949 0.93260 1.23212 0.86889 0.97070 0.93917 1.22709 0.98053 0.95094 0.99892 1.21979 0.85658 1.00530 0.88925 1.44580 1.16618 1.64902 1.06905 1.19065 0.98388 1.30552 0.87184 0.90433 1.24791 0.96971 1.00730 0.98113 1.69793 1.17011 1.42267 1.27947 0.86074 0.79157 0.77149 0.83111 1.21631 1.21659 1.20688 1.20987 0.93755 0.96254 0.86515 0.92184 0.91598 0.92529 0.89543 0.90595 0.85681 0.86991 0.89813 0.89574 0.89413 0.89838 0.91559 0.92195 0.87566 0.96905 0.93682 0.95628 0.95142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.90 37.16 0.33 -1.21 16 2 C -0.13 -1.17 5.07 -26.73 -0.14 -1.31 16 3 C -0.11 -1.02 2.19 -91.77 -0.20 -1.22 16 4 H 0.10 0.86 7.36 -51.93 -0.38 0.48 16 5 C -0.15 -1.33 4.00 -26.73 -0.11 -1.43 16 6 C 0.45 3.94 3.11 37.16 0.12 4.06 16 7 F -0.18 -1.60 13.36 2.25 0.03 -1.57 16 8 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 9 F -0.18 -1.68 16.50 2.25 0.04 -1.65 16 10 C 0.55 7.11 6.42 -10.99 -0.07 7.03 16 11 O -0.54 -8.77 16.04 5.55 0.09 -8.68 16 12 N -0.64 -8.28 3.62 -185.63 -0.67 -8.96 16 13 C 0.13 1.83 8.08 -3.52 -0.03 1.80 16 14 C -0.10 -1.55 0.98 -154.68 -0.15 -1.70 16 15 C 0.11 1.29 7.80 -3.53 -0.03 1.27 16 16 C -0.12 -2.07 6.42 -25.11 -0.16 -2.23 16 17 C 0.15 3.54 5.90 -2.32 -0.01 3.52 16 18 N -0.60 -14.56 3.41 -170.35 -0.58 -15.14 16 19 C -0.22 -5.98 10.28 -15.06 -0.15 -6.13 16 20 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.16 10.09 55.49 0.56 -25.60 16 23 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 27 C 0.15 2.82 6.75 -3.56 -0.02 2.79 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.79 6.56 -51.93 -0.34 0.45 16 30 H 0.06 0.50 5.87 -51.93 -0.30 0.20 16 31 H 0.09 0.72 5.85 -51.93 -0.30 0.42 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.13 1.11 6.09 -51.93 -0.32 0.79 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.33 8.12 -51.93 -0.42 0.91 16 36 H 0.09 1.15 8.00 -51.92 -0.42 0.74 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.85 8.12 -51.92 -0.42 0.43 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 41 H 0.11 2.79 5.89 -51.93 -0.31 2.48 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.03 0.47 7.86 -51.93 -0.41 0.07 16 45 H 0.03 0.55 8.09 -51.93 -0.42 0.13 16 LS Contribution 363.46 15.07 5.48 5.48 Total: -1.00 -30.29 363.46 -7.31 -37.60 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.54 Total: -1.13 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -0.72 Total: 4.85 kcal Atomic # 7 Polarization: -49.01 SS G_CDS: -0.69 Total: -49.70 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.68 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.11 Total: -4.89 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.29 -7.31 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148620466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.224 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds