Wall clock time and date at job start Tue Mar 31 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47071 * 2 1 4 4 H 1.08995 * 109.47540 * 185.53461 * 3 2 1 5 5 C 1.52999 * 109.47217 * 305.53926 * 3 2 1 6 6 C 1.53004 * 109.46930 * 295.66819 * 5 3 2 7 7 F 1.39896 * 109.46965 * 65.63854 * 6 5 3 8 8 F 1.39904 * 109.46941 * 185.64023 * 6 5 3 9 9 F 1.39898 * 109.46973 * 305.64049 * 6 5 3 10 10 C 1.50700 * 109.47049 * 65.53555 * 3 2 1 11 11 O 1.21287 * 120.00125 * 267.58714 * 10 3 2 12 12 N 1.34774 * 120.00161 * 87.58247 * 10 3 2 13 13 C 1.47849 * 134.36514 * 174.86337 * 12 10 3 14 14 C 1.52570 * 85.66107 * 156.37637 * 13 12 10 15 15 C 1.47856 * 134.36408 * 354.86773 * 12 10 3 16 16 C 1.53920 * 115.91989 * 264.97667 * 14 13 12 17 17 C 1.55161 * 101.43350 * 264.39727 * 16 14 13 18 18 N 1.47548 * 105.00605 * 324.38418 * 17 16 14 19 19 C 1.36942 * 125.65492 * 203.91596 * 18 17 16 20 20 H 1.08001 * 119.99740 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00092 * 359.97438 * 19 18 17 22 22 N 1.31620 * 119.99886 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99925 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46775 * 90.00292 * 23 21 19 25 25 H 1.48501 * 109.47326 * 209.99872 * 23 21 19 26 26 H 1.48493 * 109.47388 * 330.00374 * 23 21 19 27 27 C 1.47356 * 108.68534 * 23.91129 * 18 17 16 28 28 H 1.08998 * 109.46547 * 186.37926 * 1 2 3 29 29 H 1.09003 * 109.46934 * 306.37086 * 1 2 3 30 30 H 1.08995 * 109.47322 * 66.37415 * 1 2 3 31 31 H 1.08997 * 109.47444 * 240.00332 * 2 1 3 32 32 H 1.09005 * 109.47328 * 119.99576 * 2 1 3 33 33 H 1.09005 * 109.47264 * 55.66156 * 5 3 2 34 34 H 1.08994 * 109.47362 * 175.66643 * 5 3 2 35 35 H 1.08996 * 113.84255 * 42.19080 * 13 12 10 36 36 H 1.09008 * 113.95501 * 270.57140 * 13 12 10 37 37 H 1.08992 * 113.84211 * 89.43460 * 15 12 10 38 38 H 1.09010 * 113.83608 * 317.81133 * 15 12 10 39 39 H 1.08998 * 111.00786 * 146.37228 * 16 14 13 40 40 H 1.08995 * 111.08435 * 22.45892 * 16 14 13 41 41 H 1.08996 * 110.33568 * 205.49962 * 17 16 14 42 42 H 1.08994 * 110.41760 * 83.30568 * 17 16 14 43 43 H 0.97004 * 119.99724 * 179.97438 * 22 21 19 44 44 H 1.09003 * 109.98128 * 117.31108 * 27 18 17 45 45 H 1.08997 * 109.99097 * 238.57243 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1255 1.4442 -0.0991 5 6 1.4195 2.2029 -1.1738 6 6 1.8997 1.5886 -2.4903 7 9 1.4029 0.2859 -2.6055 8 9 1.4369 2.3606 -3.5613 9 9 3.2982 1.5576 -2.5077 10 6 1.6527 2.1123 1.2933 11 8 0.6159 2.7374 1.3657 12 7 2.4583 2.0165 2.3694 13 6 2.4460 2.6049 3.7257 14 6 3.2972 1.4044 4.1285 15 6 3.7068 1.2811 2.6641 16 6 2.5332 0.2053 4.7180 17 6 2.6695 0.4721 6.2404 18 7 4.0134 1.0581 6.4067 19 6 4.7576 1.0351 7.5561 20 1 5.7350 1.4941 7.5758 21 6 4.2556 0.4220 8.6958 22 7 3.0646 -0.1378 8.6717 23 14 5.2710 0.3901 10.2634 24 1 4.9634 1.5938 11.0769 25 1 4.9416 -0.8308 11.0419 26 1 6.7151 0.3822 9.9177 27 6 4.4220 1.6719 5.1309 28 1 -0.3632 -1.0213 0.1142 29 1 -0.3633 0.6094 0.8275 30 1 -0.3634 0.4118 -0.9415 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.3330 2.1358 -1.1165 34 1 1.7218 3.2491 -1.1295 35 1 1.4599 2.6214 4.1899 36 1 2.9676 3.5593 3.7989 37 1 4.6127 1.8321 2.4120 38 1 3.7123 0.2561 2.2930 39 1 3.0092 -0.7354 4.4416 40 1 1.4875 0.2173 4.4109 41 1 2.5919 -0.4617 6.7971 42 1 1.9060 1.1752 6.5731 43 1 2.7140 -0.5665 9.4680 44 1 4.5576 2.7456 5.2608 45 1 5.3493 1.2193 4.7798 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148620466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:53 Heat of formation + Delta-G solvation = -149.915922 kcal Electronic energy + Delta-G solvation = -30157.393888 eV Core-core repulsion = 25568.008482 eV Total energy + Delta-G solvation = -4589.385406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.14002 -48.63255 -48.57598 -41.90934 -40.05347 -37.31781 -36.59612 -34.06153 -31.69433 -31.32991 -30.26845 -28.40737 -27.29738 -26.80852 -25.27273 -24.49956 -22.61256 -22.13072 -20.13775 -19.69973 -19.57201 -19.32067 -18.66090 -18.32863 -17.46357 -17.18116 -16.82553 -16.72066 -16.22949 -16.07592 -15.54822 -15.48190 -15.38163 -15.09926 -14.90149 -14.77516 -14.62473 -14.36506 -14.09814 -13.93961 -13.80332 -13.68201 -13.52078 -13.35441 -13.22904 -12.85212 -12.81362 -12.69438 -12.48071 -12.33760 -12.00552 -11.99885 -11.83869 -11.79876 -11.73285 -11.48238 -11.30214 -10.71514 -10.67563 -9.69332 -8.84779 -7.74250 -5.17767 1.48096 1.49475 1.50548 1.59225 1.62234 1.90759 2.52504 2.78736 2.95469 3.07982 3.30395 3.36513 3.47223 3.61859 3.69511 3.75217 3.80312 4.05021 4.13634 4.21344 4.29037 4.40612 4.42561 4.48291 4.57813 4.63129 4.67941 4.71871 4.81696 4.85158 4.89190 4.94587 5.09794 5.10374 5.12783 5.21102 5.24770 5.37167 5.51145 5.64529 5.85110 6.33642 6.69418 7.05717 7.13948 7.82267 8.45844 9.27869 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.002408 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.997253 B =11626.593424 C =11787.421525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.126 4.126 3 C -0.098 4.098 4 H 0.124 0.876 5 C -0.151 4.151 6 C 0.462 3.538 7 F -0.178 7.178 8 F -0.188 7.188 9 F -0.183 7.183 10 C 0.544 3.456 11 O -0.580 6.580 12 N -0.637 5.637 13 C 0.122 3.878 14 C -0.098 4.098 15 C 0.128 3.872 16 C -0.101 4.101 17 C 0.157 3.843 18 N -0.627 5.627 19 C -0.232 4.232 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.951 5.951 23 Si 0.977 3.023 24 H -0.291 1.291 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.148 3.852 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.070 0.930 42 H -0.021 1.021 43 H 0.245 0.755 44 H 0.031 0.969 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.034 1.661 -24.014 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.163 4.163 3 C -0.120 4.120 4 H 0.142 0.858 5 C -0.189 4.189 6 C 0.408 3.592 7 F -0.160 7.160 8 F -0.169 7.169 9 F -0.165 7.165 10 C 0.334 3.666 11 O -0.460 6.460 12 N -0.371 5.371 13 C 0.000 4.000 14 C -0.099 4.099 15 C 0.007 3.993 16 C -0.139 4.139 17 C 0.032 3.968 18 N -0.353 5.353 19 C -0.361 4.361 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.806 3.194 24 H -0.218 1.218 25 H -0.223 1.223 26 H -0.191 1.191 27 C 0.023 3.977 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.088 0.912 42 H -0.003 1.003 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.681 1.923 -23.991 24.077 hybrid contribution 0.077 0.083 1.254 1.259 sum -0.605 2.006 -22.737 22.833 Atomic orbital electron populations 1.21867 0.95496 1.02260 1.01794 1.21779 0.96853 0.92759 1.04917 1.21271 1.03733 0.96846 0.90119 0.85818 1.22751 1.05570 1.02332 0.88261 1.20427 0.75208 0.76422 0.87180 1.93144 1.87390 1.39014 1.96433 1.93191 1.88681 1.75298 1.59764 1.93186 1.30061 1.96352 1.96886 1.20334 0.82570 0.79537 0.84115 1.90695 1.25625 1.45178 1.84498 1.50134 1.26218 1.48100 1.12608 1.23051 0.99881 0.97288 0.79793 1.22338 0.96435 0.96142 0.94979 1.23306 0.87143 0.98797 0.90071 1.22453 0.99038 0.96754 0.95689 1.21701 0.84869 0.97759 0.92489 1.44885 1.16672 1.65531 1.08200 1.19474 0.98805 1.29508 0.88316 0.89717 1.25609 0.98148 1.01278 1.01203 1.70063 1.18572 1.43450 1.28078 0.85086 0.78475 0.76438 0.79395 1.21792 1.22321 1.19104 1.21183 0.95458 0.96095 0.84963 0.91541 0.94202 0.91881 0.88101 0.90474 0.86133 0.86282 0.92097 0.88190 0.86355 0.87524 0.90420 0.91638 0.91230 1.00266 0.94547 0.95143 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.90 71.98 0.64 -2.19 16 2 C -0.13 -1.94 5.07 30.60 0.16 -1.79 16 3 C -0.10 -1.60 2.19 -11.54 -0.03 -1.62 16 4 H 0.12 1.52 7.36 -2.39 -0.02 1.50 16 5 C -0.15 -2.26 4.00 30.60 0.12 -2.14 16 6 C 0.46 6.80 3.11 71.98 0.22 7.03 16 7 F -0.18 -2.73 13.36 44.97 0.60 -2.13 16 8 F -0.19 -3.12 17.32 44.97 0.78 -2.34 16 9 F -0.18 -2.78 16.50 44.97 0.74 -2.04 16 10 C 0.54 13.06 6.42 87.66 0.56 13.62 16 11 O -0.58 -18.34 16.04 -3.05 -0.05 -18.39 16 12 N -0.64 -14.92 3.62 -859.61 -3.11 -18.03 16 13 C 0.12 3.39 8.08 85.98 0.69 4.08 16 14 C -0.10 -2.78 0.98 -52.08 -0.05 -2.83 16 15 C 0.13 2.43 7.80 85.97 0.67 3.10 16 16 C -0.10 -3.45 6.42 31.65 0.20 -3.24 16 17 C 0.16 7.47 5.90 86.92 0.51 7.98 16 18 N -0.63 -30.38 3.41 -692.86 -2.36 -32.74 16 19 C -0.23 -12.46 10.28 84.03 0.86 -11.59 16 20 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 21 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 22 N -0.95 -56.10 10.09 21.65 0.22 -55.88 16 23 Si 0.98 44.75 29.55 68.60 2.03 46.78 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 C 0.15 5.25 6.75 86.22 0.58 5.83 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.04 0.93 6.56 -2.39 -0.02 0.92 16 30 H 0.06 1.03 5.87 -2.39 -0.01 1.02 16 31 H 0.10 1.32 5.85 -2.39 -0.01 1.31 16 32 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.12 1.96 6.09 -2.38 -0.01 1.95 16 34 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.96 8.12 -2.39 -0.02 1.94 16 36 H 0.10 2.50 8.00 -2.38 -0.02 2.48 16 37 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.11 1.62 8.12 -2.38 -0.02 1.60 16 39 H 0.08 2.48 8.14 -2.39 -0.02 2.47 16 40 H 0.06 2.16 8.06 -2.39 -0.02 2.14 16 41 H 0.07 3.84 5.89 -2.39 -0.01 3.82 16 42 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 43 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 44 H 0.03 1.07 7.86 -2.39 -0.02 1.05 16 45 H 0.05 1.53 8.09 -2.39 -0.02 1.51 16 Total: -1.00 -68.03 363.46 5.48 -62.55 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 1.01 Total: 9.42 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.62 Total: 12.80 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -5.25 Total: -106.65 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.05 Total: -18.39 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 2.12 Total: -6.51 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -68.03 5.48 -62.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148620466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.364 kcal (2) G-P(sol) polarization free energy of solvation -68.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds