Wall clock time and date at job start Tue Mar 31 2020 17:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47555 * 2 1 4 4 H 1.08997 * 109.46965 * 54.13618 * 3 2 1 5 5 C 1.53002 * 109.47241 * 294.13133 * 3 2 1 6 6 C 1.53009 * 109.47180 * 174.13484 * 3 2 1 7 7 H 1.09000 * 109.46913 * 175.75020 * 6 3 2 8 8 N 1.46498 * 109.47086 * 55.75126 * 6 3 2 9 9 C 1.39142 * 120.00235 * 154.99876 * 8 6 3 10 10 C 1.39425 * 119.49929 * 0.02562 * 9 8 6 11 11 C 1.37792 * 121.19647 * 179.97438 * 10 9 8 12 12 C 1.39573 * 120.14473 * 0.24639 * 11 10 9 13 13 C 1.47010 * 120.48589 * 179.72039 * 12 11 10 14 14 O 1.21575 * 119.99448 * 174.08220 * 13 12 11 15 15 O 1.34837 * 120.00110 * 354.08336 * 13 12 11 16 16 C 1.45207 * 116.99941 * 179.97438 * 15 13 12 17 17 C 1.46539 * 119.02361 * 359.51968 * 12 11 10 18 18 C 1.40948 * 120.56552 * 180.23618 * 17 12 11 19 19 H 1.07993 * 120.00340 * 327.51043 * 18 17 12 20 20 C 1.40252 * 119.99377 * 147.50789 * 18 17 12 21 21 N 1.30640 * 119.99309 * 168.34674 * 20 18 17 22 22 Si 1.86796 * 120.00406 * 348.34628 * 20 18 17 23 23 H 1.48501 * 109.46797 * 90.62258 * 22 20 18 24 24 H 1.48502 * 109.47238 * 210.61671 * 22 20 18 25 25 H 1.48497 * 109.47208 * 330.62008 * 22 20 18 26 26 C 1.38439 * 119.50618 * 179.97438 * 9 8 6 27 27 C 1.50697 * 109.46705 * 295.75131 * 6 3 2 28 28 N 1.34774 * 120.00178 * 280.21901 * 27 6 3 29 29 O 1.21283 * 119.99896 * 100.22557 * 27 6 3 30 30 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46529 * 300.00024 * 1 2 3 32 32 H 1.09005 * 109.47218 * 59.99421 * 1 2 3 33 33 H 1.09005 * 109.46825 * 239.99536 * 2 1 3 34 34 H 1.09005 * 109.47218 * 120.00579 * 2 1 3 35 35 H 1.08996 * 109.47442 * 300.00673 * 5 3 2 36 36 H 1.09005 * 109.46417 * 60.00226 * 5 3 2 37 37 H 1.08998 * 109.46938 * 179.97438 * 5 3 2 38 38 H 0.97005 * 119.99861 * 335.00109 * 8 6 3 39 39 H 1.07994 * 119.39658 * 359.97438 * 10 9 8 40 40 H 1.08006 * 119.93004 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47163 * 300.00238 * 16 15 13 42 42 H 1.09005 * 109.46575 * 60.00136 * 16 15 13 43 43 H 1.08997 * 109.47402 * 179.97438 * 16 15 13 44 44 H 0.97009 * 119.99811 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.11286 * 359.97438 * 26 9 8 46 46 H 0.97004 * 119.99937 * 5.07866 * 28 27 6 47 47 H 0.96999 * 119.99985 * 185.08433 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5936 1.9856 0.8328 5 6 1.6541 2.1199 -1.3164 6 6 3.5630 1.4448 0.1474 7 1 3.9337 2.4670 0.0717 8 7 4.1577 0.6298 -0.9148 9 6 5.4647 0.8703 -1.3272 10 6 6.1991 1.8893 -0.7219 11 6 7.4960 2.1573 -1.1026 12 6 8.0986 1.4080 -2.1141 13 6 9.4798 1.6915 -2.5304 14 8 10.0331 0.9669 -3.3347 15 8 10.1329 2.7551 -2.0201 16 6 11.4941 2.9736 -2.4759 17 6 7.3359 0.3315 -2.7521 18 6 7.9144 -0.4487 -3.7735 19 1 8.6340 -0.0084 -4.4475 20 6 7.5552 -1.7972 -3.9143 21 7 7.9077 -2.4586 -4.9843 22 14 6.5730 -2.6473 -2.5719 23 1 5.1221 -2.5026 -2.8532 24 1 6.9288 -4.0886 -2.5356 25 1 6.8873 -2.0266 -1.2600 26 6 6.0167 0.0936 -2.3314 27 6 3.9386 0.8723 1.4898 28 7 3.8598 1.6390 2.5954 29 8 4.3118 -0.2785 1.5753 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.1005 1.5766 -2.1492 36 1 0.5691 2.1181 -1.4214 37 1 2.0171 3.1476 -1.3162 38 1 3.6403 -0.0775 -1.3307 39 1 5.7431 2.4792 0.0594 40 1 8.0459 2.9519 -0.6201 41 1 12.1050 2.1066 -2.2246 42 1 11.4965 3.1190 -3.5562 43 1 11.9024 3.8595 -1.9895 44 1 7.6596 -3.3913 -5.0816 45 1 5.4353 -0.6929 -2.7896 46 1 3.4922 2.5350 2.5391 47 1 4.1709 1.2951 3.4474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169157263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:49 Heat of formation + Delta-G solvation = -110.620879 kcal Electronic energy + Delta-G solvation = -29737.856434 eV Core-core repulsion = 25692.031729 eV Total energy + Delta-G solvation = -4045.824704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.15485 -39.16124 -37.72173 -36.74003 -35.25717 -34.10373 -33.58354 -33.23402 -30.62010 -30.32793 -28.69563 -27.44412 -26.20555 -25.34843 -24.02154 -22.15228 -21.38320 -21.05749 -19.96260 -19.05850 -17.75901 -17.17984 -16.84252 -16.71061 -16.60454 -15.74937 -15.38168 -15.30189 -14.90595 -14.71253 -14.31977 -14.12240 -13.78763 -13.55780 -13.33958 -13.16145 -12.67443 -12.58986 -12.44067 -12.36740 -12.16832 -12.01546 -11.84597 -11.62337 -11.49509 -11.19206 -11.00027 -10.86395 -10.79118 -10.75514 -10.61576 -10.22127 -9.98957 -9.85516 -9.69705 -9.63248 -9.23940 -9.02597 -8.84472 -7.66801 -6.98192 -6.64084 -4.56763 2.16757 2.67915 2.74869 3.13397 3.22556 3.38966 3.45934 3.78929 3.89801 3.96160 4.01231 4.53016 4.58666 4.60548 4.74133 5.00452 5.23946 5.28716 5.36496 5.38978 5.45220 5.48912 5.63898 5.72712 5.72936 5.85592 5.88534 5.89957 5.91285 5.94066 6.11377 6.18482 6.22612 6.33623 6.52257 6.59351 6.78641 6.95860 6.99422 7.24491 7.30244 7.37106 7.51546 7.63431 7.81929 8.17182 8.25293 8.36681 8.40633 8.65558 8.80961 9.15089 9.99002 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.004293 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.710043 B = 6520.356977 C = 7969.695955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.090 4.090 4 H 0.082 0.918 5 C -0.147 4.147 6 C 0.143 3.857 7 H 0.104 0.896 8 N -0.725 5.725 9 C 0.275 3.725 10 C -0.317 4.317 11 C 0.021 3.979 12 C -0.278 4.278 13 C 0.503 3.497 14 O -0.514 6.514 15 O -0.376 6.376 16 C 0.041 3.959 17 C 0.156 3.844 18 C -0.391 4.391 19 H 0.118 0.882 20 C 0.080 3.920 21 N -0.786 5.786 22 Si 0.919 3.081 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.239 1.239 26 C -0.312 4.312 27 C 0.499 3.501 28 N -0.862 5.862 29 O -0.524 6.524 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.398 0.602 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.086 0.914 44 H 0.289 0.711 45 H 0.107 0.893 46 H 0.398 0.602 47 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 9.622 10.932 18.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.165 4.165 3 C -0.110 4.110 4 H 0.100 0.900 5 C -0.204 4.204 6 C 0.032 3.968 7 H 0.121 0.879 8 N -0.356 5.356 9 C 0.174 3.826 10 C -0.339 4.339 11 C 0.001 3.999 12 C -0.282 4.282 13 C 0.353 3.647 14 O -0.405 6.405 15 O -0.295 6.295 16 C -0.054 4.054 17 C 0.150 3.850 18 C -0.417 4.417 19 H 0.136 0.864 20 C -0.141 4.141 21 N -0.408 5.408 22 Si 0.745 3.255 23 H -0.197 1.197 24 H -0.221 1.221 25 H -0.161 1.161 26 C -0.336 4.336 27 C 0.282 3.718 28 N -0.426 5.426 29 O -0.398 6.398 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.234 0.766 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.124 0.876 46 H 0.225 0.775 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -11.670 8.542 10.447 17.841 hybrid contribution -0.359 -0.463 0.696 0.910 sum -12.028 8.079 11.143 18.279 Atomic orbital electron populations 1.21794 0.95502 1.01702 1.01709 1.21635 0.96058 0.95785 1.03064 1.21371 0.92128 0.97568 0.99885 0.89954 1.21857 1.01239 1.00646 0.96639 1.20795 0.93948 0.96627 0.85442 0.87887 1.44251 1.13088 1.39109 1.39198 1.17539 0.82527 0.92040 0.90497 1.19693 0.96985 1.06841 1.10362 1.20660 0.92987 0.94054 0.92152 1.19474 0.91076 1.09599 1.08025 1.21219 0.87117 0.77509 0.78808 1.90793 1.68463 1.47759 1.33471 1.86575 1.27686 1.48462 1.66818 1.22958 0.81371 1.01065 0.99959 1.18130 0.89240 0.89197 0.88405 1.20098 1.18775 0.93896 1.08916 0.86417 1.26427 0.93494 0.98246 0.95978 1.69581 1.34815 1.11303 1.25133 0.86226 0.79125 0.76668 0.83434 1.19693 1.22081 1.16140 1.20333 0.96984 1.08415 1.07837 1.21655 0.76764 0.86458 0.86926 1.43944 1.67930 1.19526 1.11246 1.90752 1.45067 1.17534 1.86435 0.92755 0.92929 0.92342 0.91499 0.91346 0.91624 0.92185 0.92291 0.76633 0.88798 0.87483 0.92812 0.92790 0.89536 0.90045 0.87565 0.77466 0.77252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.68 37.16 0.36 -0.91 16 2 C -0.13 -1.36 4.92 -26.74 -0.13 -1.49 16 3 C -0.09 -0.86 2.19 -90.62 -0.20 -1.06 16 4 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -1.34 8.85 37.16 0.33 -1.01 16 6 C 0.14 1.82 1.77 -69.08 -0.12 1.70 16 7 H 0.10 1.20 6.42 -51.93 -0.33 0.87 16 8 N -0.73 -12.17 4.13 -53.42 -0.22 -12.39 16 9 C 0.28 5.74 6.60 -84.03 -0.55 5.19 16 10 C -0.32 -6.33 9.08 -39.30 -0.36 -6.69 16 11 C 0.02 0.44 9.60 -39.25 -0.38 0.06 16 12 C -0.28 -6.87 6.07 -102.50 -0.62 -7.50 16 13 C 0.50 12.32 7.85 34.29 0.27 12.59 16 14 O -0.51 -14.02 13.55 -19.32 -0.26 -14.29 16 15 O -0.38 -7.73 9.85 -40.87 -0.40 -8.13 16 16 C 0.04 0.66 10.57 101.05 1.07 1.73 16 17 C 0.16 4.09 5.26 -104.67 -0.55 3.54 16 18 C -0.39 -11.06 8.41 -37.80 -0.32 -11.38 16 19 H 0.12 3.65 6.15 -52.49 -0.32 3.33 16 20 C 0.08 2.18 5.48 -17.30 -0.09 2.08 16 21 N -0.79 -21.35 13.92 55.56 0.77 -20.58 16 22 Si 0.92 21.90 24.45 -169.99 -4.16 17.74 16 23 H -0.27 -6.06 6.60 56.52 0.37 -5.69 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.24 -6.07 6.79 56.52 0.38 -5.69 16 26 C -0.31 -7.45 6.89 -38.66 -0.27 -7.72 16 27 C 0.50 6.96 6.16 -10.99 -0.07 6.90 16 28 N -0.86 -7.83 8.87 31.22 0.28 -7.55 16 29 O -0.52 -10.03 16.95 5.55 0.09 -9.93 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 6.59 -51.93 -0.34 0.11 16 33 H 0.07 0.79 6.58 -51.93 -0.34 0.45 16 34 H 0.07 0.86 6.85 -51.93 -0.36 0.50 16 35 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 36 H 0.06 0.46 6.59 -51.93 -0.34 0.12 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.40 6.56 6.71 -40.82 -0.27 6.28 16 39 H 0.09 1.59 6.03 -52.49 -0.32 1.28 16 40 H 0.11 2.02 7.63 -52.48 -0.40 1.62 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.29 7.05 8.29 -40.82 -0.34 6.71 16 45 H 0.11 2.53 4.54 -52.48 -0.24 2.29 16 46 H 0.40 2.21 8.83 -40.82 -0.36 1.85 16 47 H 0.40 3.33 8.93 -40.82 -0.36 2.97 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -34.33 376.47 -6.39 -40.72 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.53 Total: 12.72 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -1.63 Total: -3.98 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.83 Total: -40.53 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.57 Total: -32.35 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.16 Total: 17.74 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.33 -6.39 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169157263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.899 kcal (2) G-P(sol) polarization free energy of solvation -34.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds