Wall clock time and date at job start Tue Mar 31 2020 17:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47555 * 2 1 4 4 H 1.08997 * 109.46965 * 54.13618 * 3 2 1 5 5 C 1.53002 * 109.47241 * 294.13133 * 3 2 1 6 6 C 1.53009 * 109.47180 * 174.13484 * 3 2 1 7 7 H 1.09000 * 109.46913 * 175.75020 * 6 3 2 8 8 N 1.46498 * 109.47086 * 55.75126 * 6 3 2 9 9 C 1.39142 * 120.00235 * 154.99876 * 8 6 3 10 10 C 1.39425 * 119.49929 * 0.02562 * 9 8 6 11 11 C 1.37792 * 121.19647 * 179.97438 * 10 9 8 12 12 C 1.39573 * 120.14473 * 0.24639 * 11 10 9 13 13 C 1.47010 * 120.48589 * 179.72039 * 12 11 10 14 14 O 1.21575 * 119.99448 * 174.08220 * 13 12 11 15 15 O 1.34837 * 120.00110 * 354.08336 * 13 12 11 16 16 C 1.45207 * 116.99941 * 179.97438 * 15 13 12 17 17 C 1.46539 * 119.02361 * 359.51968 * 12 11 10 18 18 C 1.40948 * 120.56552 * 180.23618 * 17 12 11 19 19 H 1.07993 * 120.00340 * 327.51043 * 18 17 12 20 20 C 1.40252 * 119.99377 * 147.50789 * 18 17 12 21 21 N 1.30640 * 119.99309 * 168.34674 * 20 18 17 22 22 Si 1.86796 * 120.00406 * 348.34628 * 20 18 17 23 23 H 1.48501 * 109.46797 * 90.62258 * 22 20 18 24 24 H 1.48502 * 109.47238 * 210.61671 * 22 20 18 25 25 H 1.48497 * 109.47208 * 330.62008 * 22 20 18 26 26 C 1.38439 * 119.50618 * 179.97438 * 9 8 6 27 27 C 1.50697 * 109.46705 * 295.75131 * 6 3 2 28 28 N 1.34774 * 120.00178 * 280.21901 * 27 6 3 29 29 O 1.21283 * 119.99896 * 100.22557 * 27 6 3 30 30 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46529 * 300.00024 * 1 2 3 32 32 H 1.09005 * 109.47218 * 59.99421 * 1 2 3 33 33 H 1.09005 * 109.46825 * 239.99536 * 2 1 3 34 34 H 1.09005 * 109.47218 * 120.00579 * 2 1 3 35 35 H 1.08996 * 109.47442 * 300.00673 * 5 3 2 36 36 H 1.09005 * 109.46417 * 60.00226 * 5 3 2 37 37 H 1.08998 * 109.46938 * 179.97438 * 5 3 2 38 38 H 0.97005 * 119.99861 * 335.00109 * 8 6 3 39 39 H 1.07994 * 119.39658 * 359.97438 * 10 9 8 40 40 H 1.08006 * 119.93004 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47163 * 300.00238 * 16 15 13 42 42 H 1.09005 * 109.46575 * 60.00136 * 16 15 13 43 43 H 1.08997 * 109.47402 * 179.97438 * 16 15 13 44 44 H 0.97009 * 119.99811 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.11286 * 359.97438 * 26 9 8 46 46 H 0.97004 * 119.99937 * 5.07866 * 28 27 6 47 47 H 0.96999 * 119.99985 * 185.08433 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5936 1.9856 0.8328 5 6 1.6541 2.1199 -1.3164 6 6 3.5630 1.4448 0.1474 7 1 3.9337 2.4670 0.0717 8 7 4.1577 0.6298 -0.9148 9 6 5.4647 0.8703 -1.3272 10 6 6.1991 1.8893 -0.7219 11 6 7.4960 2.1573 -1.1026 12 6 8.0986 1.4080 -2.1141 13 6 9.4798 1.6915 -2.5304 14 8 10.0331 0.9669 -3.3347 15 8 10.1329 2.7551 -2.0201 16 6 11.4941 2.9736 -2.4759 17 6 7.3359 0.3315 -2.7521 18 6 7.9144 -0.4487 -3.7735 19 1 8.6340 -0.0084 -4.4475 20 6 7.5552 -1.7972 -3.9143 21 7 7.9077 -2.4586 -4.9843 22 14 6.5730 -2.6473 -2.5719 23 1 5.1221 -2.5026 -2.8532 24 1 6.9288 -4.0886 -2.5356 25 1 6.8873 -2.0266 -1.2600 26 6 6.0167 0.0936 -2.3314 27 6 3.9386 0.8723 1.4898 28 7 3.8598 1.6390 2.5954 29 8 4.3118 -0.2785 1.5753 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.1005 1.5766 -2.1492 36 1 0.5691 2.1181 -1.4214 37 1 2.0171 3.1476 -1.3162 38 1 3.6403 -0.0775 -1.3307 39 1 5.7431 2.4792 0.0594 40 1 8.0459 2.9519 -0.6201 41 1 12.1050 2.1066 -2.2246 42 1 11.4965 3.1190 -3.5562 43 1 11.9024 3.8595 -1.9895 44 1 7.6596 -3.3913 -5.0816 45 1 5.4353 -0.6929 -2.7896 46 1 3.4922 2.5350 2.5391 47 1 4.1709 1.2951 3.4474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169157263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:48 Heat of formation + Delta-G solvation = -136.732234 kcal Electronic energy + Delta-G solvation = -29738.988707 eV Core-core repulsion = 25692.031729 eV Total energy + Delta-G solvation = -4046.956978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33757 -40.91492 -39.29651 -37.87292 -37.01140 -35.83325 -34.85545 -34.54795 -32.39056 -31.50450 -29.96993 -28.75411 -27.53305 -27.09561 -24.90970 -23.83081 -23.13247 -22.04093 -21.43107 -20.37690 -19.34146 -18.57785 -18.39529 -18.20080 -17.71807 -17.42339 -16.98669 -16.69374 -16.34542 -15.91951 -15.54673 -15.38196 -15.22504 -15.09649 -14.47318 -14.35498 -14.28244 -14.18132 -14.04571 -13.80139 -13.28408 -13.22695 -13.10844 -12.84974 -12.79726 -12.69242 -12.62950 -12.54748 -12.12799 -11.76384 -11.69710 -11.67775 -11.55258 -11.48067 -11.27319 -11.03965 -10.78751 -10.58366 -10.45946 -9.53884 -8.96641 -8.26026 -6.60467 0.33716 0.86166 1.20006 1.31300 1.44353 1.66892 2.01921 2.07145 2.16626 2.38642 2.65899 2.79238 3.50296 3.68608 3.77039 3.94182 4.15648 4.20789 4.31723 4.39632 4.44721 4.45343 4.53635 4.55714 4.63211 4.66561 4.74866 4.75919 4.77900 4.85969 5.06104 5.13778 5.16476 5.19882 5.20352 5.22896 5.44347 5.51963 5.53008 5.56165 5.75251 5.83215 5.95380 6.00591 6.30491 6.46200 6.54896 6.70339 6.74346 6.86115 7.30841 7.44458 8.08363 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011330 B = 0.004293 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.710043 B = 6520.356977 C = 7969.695955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.080 4.080 4 H 0.118 0.882 5 C -0.145 4.145 6 C 0.135 3.865 7 H 0.127 0.873 8 N -0.718 5.718 9 C 0.287 3.713 10 C -0.299 4.299 11 C 0.027 3.973 12 C -0.310 4.310 13 C 0.501 3.499 14 O -0.555 6.555 15 O -0.370 6.370 16 C 0.033 3.967 17 C 0.147 3.853 18 C -0.436 4.436 19 H 0.074 0.926 20 C 0.049 3.951 21 N -0.831 5.831 22 Si 0.973 3.027 23 H -0.250 1.250 24 H -0.281 1.281 25 H -0.265 1.265 26 C -0.334 4.334 27 C 0.497 3.503 28 N -0.835 5.835 29 O -0.584 6.584 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.138 0.862 44 H 0.297 0.703 45 H 0.101 0.899 46 H 0.419 0.581 47 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.909 12.757 14.485 24.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.099 4.099 4 H 0.136 0.864 5 C -0.203 4.203 6 C 0.026 3.974 7 H 0.144 0.856 8 N -0.346 5.346 9 C 0.182 3.818 10 C -0.321 4.321 11 C 0.008 3.992 12 C -0.314 4.314 13 C 0.353 3.647 14 O -0.449 6.449 15 O -0.288 6.288 16 C -0.060 4.060 17 C 0.142 3.858 18 C -0.464 4.464 19 H 0.092 0.908 20 C -0.168 4.168 21 N -0.456 5.456 22 Si 0.798 3.202 23 H -0.175 1.175 24 H -0.208 1.208 25 H -0.189 1.189 26 C -0.358 4.358 27 C 0.280 3.720 28 N -0.401 5.401 29 O -0.463 6.463 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.234 0.766 39 H 0.155 0.845 40 H 0.158 0.842 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.156 0.844 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.251 0.749 47 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -14.514 11.757 14.049 23.372 hybrid contribution 0.424 -1.126 -0.154 1.213 sum -14.090 10.631 13.895 22.463 Atomic orbital electron populations 1.21762 0.93630 1.01918 1.02921 1.21619 0.97697 0.96257 1.01131 1.21407 0.89660 0.97229 1.01609 0.86372 1.21860 1.02381 1.00759 0.95264 1.21223 0.96046 0.96525 0.83631 0.85576 1.44422 1.11476 1.39153 1.39573 1.17675 0.84140 0.90985 0.89040 1.20181 0.96260 1.05759 1.09887 1.20996 0.93601 0.93927 0.90693 1.19789 0.91734 1.10292 1.09590 1.21356 0.87408 0.77775 0.78150 1.90785 1.69409 1.49441 1.35272 1.86522 1.29658 1.46431 1.66154 1.23370 0.79075 1.03096 1.00493 1.18373 0.90225 0.89351 0.87843 1.19888 1.20208 0.95399 1.10895 0.90843 1.26957 0.94205 0.98178 0.97451 1.69601 1.37306 1.12116 1.26559 0.85413 0.79166 0.76013 0.79647 1.17527 1.20842 1.18908 1.20346 0.96366 1.09566 1.09538 1.21763 0.76149 0.85900 0.88154 1.43701 1.66123 1.19945 1.10288 1.90751 1.48122 1.20076 1.87302 0.93209 0.91341 0.91390 0.93433 0.93391 0.93977 0.90383 0.91095 0.76581 0.84470 0.84237 0.93238 0.93210 0.84393 0.89180 0.88099 0.74929 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.68 71.98 0.70 -1.31 16 2 C -0.13 -2.44 4.92 30.59 0.15 -2.29 16 3 C -0.08 -1.19 2.19 -10.79 -0.02 -1.21 16 4 H 0.12 1.00 8.14 -2.39 -0.02 0.99 16 5 C -0.15 -2.08 8.85 71.98 0.64 -1.44 16 6 C 0.14 2.88 1.77 44.25 0.08 2.96 16 7 H 0.13 2.15 6.42 -2.39 -0.02 2.14 16 8 N -0.72 -22.45 4.13 -322.92 -1.33 -23.78 16 9 C 0.29 11.43 6.60 38.32 0.25 11.69 16 10 C -0.30 -10.85 9.08 22.45 0.20 -10.65 16 11 C 0.03 1.08 9.60 22.49 0.22 1.29 16 12 C -0.31 -15.53 6.07 -18.49 -0.11 -15.64 16 13 C 0.50 25.25 7.85 70.12 0.55 25.80 16 14 O -0.56 -32.24 13.55 19.59 0.27 -31.97 16 15 O -0.37 -14.85 9.85 -57.50 -0.57 -15.42 16 16 C 0.03 1.03 10.57 113.37 1.20 2.23 16 17 C 0.15 8.03 5.26 -19.90 -0.10 7.93 16 18 C -0.44 -26.62 8.41 23.42 0.20 -26.42 16 19 H 0.07 5.03 6.15 -2.91 -0.02 5.01 16 20 C 0.05 2.82 5.48 85.36 0.47 3.29 16 21 N -0.83 -48.25 13.92 21.88 0.30 -47.94 16 22 Si 0.97 47.31 24.45 68.60 1.68 48.98 16 23 H -0.25 -11.10 6.60 99.48 0.66 -10.44 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.26 -13.82 6.79 99.48 0.68 -13.14 16 26 C -0.33 -16.17 6.89 22.87 0.16 -16.01 16 27 C 0.50 12.04 6.16 87.66 0.54 12.58 16 28 N -0.84 -11.19 8.87 -173.54 -1.54 -12.73 16 29 O -0.58 -21.26 16.95 -3.04 -0.05 -21.31 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.82 6.59 -2.38 -0.02 0.80 16 33 H 0.05 1.07 6.58 -2.38 -0.02 1.05 16 34 H 0.05 1.12 6.85 -2.38 -0.02 1.10 16 35 H 0.04 0.81 7.73 -2.39 -0.02 0.79 16 36 H 0.08 0.86 6.59 -2.38 -0.02 0.84 16 37 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.40 12.64 6.71 -92.70 -0.62 12.02 16 39 H 0.14 3.79 6.03 -2.91 -0.02 3.78 16 40 H 0.14 4.67 7.63 -2.91 -0.02 4.65 16 41 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.05 1.58 8.14 -2.38 -0.02 1.57 16 43 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.30 15.40 8.29 -92.70 -0.77 14.63 16 45 H 0.10 4.91 4.54 -2.91 -0.01 4.89 16 46 H 0.42 2.14 8.83 -92.71 -0.82 1.32 16 47 H 0.40 5.08 8.93 -92.71 -0.83 4.25 16 Total: -1.00 -83.22 376.47 2.56 -80.66 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: -1.30 Total: 30.72 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 5.11 Total: -7.21 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.57 Total: -84.46 kcal Atomic # 8 Polarization: -68.35 SS G_CDS: -0.35 Total: -68.70 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.68 Total: 48.98 kcal Total: -83.22 2.56 -80.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169157263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.069 kcal (2) G-P(sol) polarization free energy of solvation -83.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds